Changeset b1674ed in flex_extract.git for For_developers/Sphinx/source/Installation


Ignore:
Timestamp:
Apr 1, 2020, 5:03:13 PM (4 years ago)
Author:
Anne Philipp <anne.philipp@…>
Branches:
master, ctbto, dev
Children:
d78851d, e0005c9
Parents:
50f9ca6
Message:

updated online documentation FIX for tickets #265 and #262

Location:
For_developers/Sphinx/source/Installation
Files:
3 edited

Legend:

Unmodified
Added
Removed

  • For_developers/Sphinx/source/Installation/gateway.rst

    r30f7911 rb1674ed  
    6666   
    6767   $ ecaccess-certificate-create
    68    Please enter your user-id: example_username
     68   Please enter your user-id: <username>
    6969   Your passcode: ***
    7070   
    7171   
    7272   
    73 The easiest way to install all required packages is to use the package management system of your Linux distribution which required admin rights.
     73The easiest way to install all required packages is to use the package management system of your Linux distribution which requires admin rights.
    7474The installation was tested under *GNU/Linux Debian buster* and *Ubuntu 18.04 Bionic Beaver*.
    7575
    … …  
    106106====================
    107107
    108 ``Flex_extract`` will be run on an ECMWF server which makes the setup the same as for the **remote mode**. In the ``setup.sh`` script `[ref] <Documentation/Input/setup.html>`_, select the ``makefile.gfortran`` for the ``CONVERT2`` Fortran program and the ECMWF server (*target*) you would like to use.
     108``Flex_extract`` will be run on an ECMWF server which makes the setup the same as for the **remote mode**. In the ``setup.sh`` script :doc:`../Documentation/Input/setup`, select the ``makefile_ecgate`` or ``makefile_cray`` for the ``calc_etadot`` Fortran program and the ECMWF server (*target*) you would like to use.
    109109The job script, send to the job queue via the ECaccess software, loads the required modules from the module system. For enabling the file transfer via the gateway, you have to set the *ECUID*, *ECGID*, *GATEWAY* and *DESTINATION* parameter values.
     110
     111Open ``setup.sh`` with your preferred editor (e.g., nano) and adapt the values: 
    110112   
     113+----------------------------------------------+----------------------------------------------+   
     114|   Use this for target = **ectrans**          |   Use this for target = **cca** or **ccb**   |
     115+----------------------------------------------+----------------------------------------------+
     116| .. code-block:: bash                         | .. code-block:: bash                         |
     117|                                              |                                              |
     118|   ...                                        |   ...                                        |   
     119|   # -----------------------------------------|   # -----------------------------------------|
     120|   # AVAILABLE COMMANDLINE ARGUMENTS TO SET   |   # AVAILABLE COMMANDLINE ARGUMENTS TO SET   |
     121|   #                                          |   #                                          | 
     122|   # THE USER HAS TO SPECIFY THESE PARAMETER  |   # THE USER HAS TO SPECIFY THESE PARAMETER  |
     123|   #                                          |   #                                          |
     124|   TARGET='ecgate'                            |   TARGET='cca'                               |
     125|   MAKEFILE='makefile_ecgate'                 |   MAKEFILE='makefile_cray'                   | 
     126|   ECUID='<username>'                         |   ECUID='<username>'                         | 
     127|   ECGID='<groupID>'                          |   ECGID='<groupID>'                          |
     128|   GATEWAY='<gatewayname>'                    |   GATEWAY='<gatewayname>'                    |
     129|   DESTINATION='<assoc_name>@genericSftp'     |   DESTINATION='<assoc_name>@genericSftp'     |
     130|   INSTALLDIR=None                            |   INSTALLDIR=None                            |
     131|   JOB_TEMPLATE='job.template'                |   JOB_TEMPLATE='job.template'                |
     132|   CONTROLFILE='CONTROL_EA5'                  |   CONTROLFILE='CONTROL_EA5'                  |
     133|   ...                                        |   ...                                        |   
     134+----------------------------------------------+----------------------------------------------+
    111135
    112 .. code-block:: bash
    113     :caption: 'Example settings for a gateway installation.'
    114     :name: setup.sh
    115    
    116     # -----------------------------------------------------------------
    117     # AVAILABLE COMMANDLINE ARGUMENTS TO SET
    118     #
    119     # THE USER HAS TO SPECIFY THESE PARAMETER
    120     #
    121     TARGET='ecgate'
    122     MAKEFILE='makefile.gfortran'
    123     ECUID='uid'
    124     ECGID='gid'
    125     GATEWAY='localserver.tld'
    126     DESTINATION='association_name@genericSftp'
    127     INSTALLDIR=None
    128     JOB_TEMPLATE='job.template'
    129     CONTROLFILE='CONTROL_EA5'
     136
    130137
    131138
    … …  
    146153   You should get an email with subject "flexcompile" within the next few minutes!
    147154
    148 ``Flex_extract`` uses the email address connectd to the user account on ECMWF servers. The email content should look like this with a "SUCCESS" statement in the last line:
     155``Flex_extract`` automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a "SUCCESS" statement in the last line:
    149156
    150157.. code-block:: bash
    151158
    152     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp phgrreal.f
    153     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp grphreal.f
    154     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp ftrafo.f
    155     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g rwGRIB2.f90
    156     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g posnam.f
    157     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g preconvert.f90
    158     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -g -O3 -o ./CONVERT2 ftrafo.o phgrreal.o grphreal.o rwGRIB2.o posnam.o preconvert.o -L/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3   
    159     -rwxr-x---. 1 USER at 353134 May 23 12:27 CONVERT2
     159    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
     160    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
     161    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
     162    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
     163    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
     164    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     165    gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
     166    ln -sf calc_etadot_fast.out calc_etadot
     167    lrwxrwxrwx. 1 <username> at 20 Mar  8 14:11 calc_etadot -> calc_etadot_fast.out
    160168    SUCCESS!   
    161    
    162    
    163    
    164    
    165169
    166    
    167    
    168          

  • For_developers/Sphinx/source/Installation/local.rst

    r30f7911 rb1674ed  
    6262| * `eccodes for python`_                        | * `emoslib`_    |
    6363| * `ecmwf-api-client`_ (everything except ERA5) |                 |
    64 | * `cdsapi`_ (just for ERA5)                    |                 |
     64| * `cdsapi`_ (just for ERA5 and member user)    |                 |
    6565+------------------------------------------------+-----------------+
    6666
    … …  
    116116     
    117117CDS API:
    118    Go to 'CDS API registration'_ and register there too. Log in at the `cdsapi`_ website and follow the instructions at section "Install the CDS API key" to save your credentials in a `.cdsapirc` file.
     118   Go to `CDS API registration`_ and register there too. Log in at the `cdsapi`_ website and follow the instructions at section "Install the CDS API key" to save your credentials in a `.cdsapirc` file.
    119119
    120120   
    … …  
    263263
    264264
    265 
    266 
    267265.. _ref-install-local:
    268266
    … …  
    270268==================
    271269
    272 First prepare the Fortran ``makefile`` for your environment and set it in the ``setup.sh`` script. (See section :ref:`ref-convert` for information on the Fortran program.)
    273 ``flex_extract`` comes with two ``makefiles`` prepared for the ``gfortran`` and
    274 the ``ifort`` compiler. The ``gfortran`` version assumes that ``eccodes`` and ``emoslib`` are installed as distribution packages.
    275 
    276  * makefile.local.gfortran
    277  * makefile.local.ifort
     270First prepare the Fortran ``makefile`` for your environment and set it in the ``setup.sh`` script. (See section :ref:`Fortran Makefile <ref-convert>` for more information.)
     271``flex_extract`` comes with two ``makefiles`` prepared for the ``gfortran`` compiler. One for the normal use ``makefile_fast`` and one for debugging ``makefile_debug`` which is usually only resonable for developers.
    278272 
    279 They can be found at ``flex_extract_vX.X/Source/Fortran``, where
    280 ``vX.X`` should be substituted with the current version number.
     273They assume that ``eccodes`` and ``emoslib`` are installed as distribution packages and can be found at ``flex_extract_vX.X/Source/Fortran``, where ``vX.X`` should be substituted with the current version number.
    281274
    282275.. caution::   
    … …  
    291284
    292285   cd flex_extract_vX.X/Source/Fortran
    293    nedit makefile.local.gfortran
     286   nedit makefile_fast
    294287 
    295288Edit the paths to the ``eccodes`` library on your local machine.
    … …  
    319312   
    320313   
    321 The Fortran program called ``CONVERT2`` will be compiled during the
     314The Fortran program called ``calc_etadot`` will be compiled during the
    322315installation process.Therefore the name of the ``makefile`` to be used needs to be given in  ``setup.sh``.
    323316
    … …  
    338331   #
    339332   TARGET='local'
    340    MAKEFILE='makefile.local.gfortran'
     333   MAKEFILE='makefile_fast'
    341334   ECUID=None
    342335   ECGID=None
    … …  
    360353.. code-block:: bash
    361354
    362    # Output of setup.sh   
    363    WARNING: installdir has not been specified
    364    flex_extract will be installed in here by compiling the Fortran source in /raid60/nas/tmc/Anne/Interpolation/flexextract/flex_extract_v7.1/source/fortran
    365    Install flex_extract_v7.1 software at local in directory /raid60/nas/tmc/Anne/Interpolation/flexextract/flex_extract_v7.1
    366 
    367    Using makefile: Makefile.local.gfortran
    368    gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp phgrreal.f
    369    gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp grphreal.f
    370    gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp ftrafo.f
    371    gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -fopenmp -I. -I/usr/local/gcc-4.9.3/grib_api-1.14.3/include -O3 rwGRIB2.f90
    372    gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -fopenmp -I. -I/usr/local/gcc-4.9.3/grib_api-1.14.3/include -O3 posnam.f
    373    gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -fopenmp -I. -I/usr/local/gcc-4.9.3/grib_api-1.14.3/include -O3 preconvert.f90
    374    gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -O3 -O3 -fopenmp -o ./CONVERT2 ftrafo.o phgrreal.o grphreal.o rwGRIB2.o posnam.o preconvert.o -L/usr/local/gcc-4.9.3/grib_api-1.14.3/lib -Bstatic  -lgrib_api_f77 -lgrib_api_f90 -lgrib_api -Bdynamic  -lm  -ljasper -lemosR64
    375 
    376    -rwxrwxr-x. 1 philipa8 tmc 282992 May 23 22:27 ./CONVERT2
    377 
    378 
    379 
    380 
    381 
     355    # Output of setup.sh   
     356        WARNING: installdir has not been specified
     357        flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
     358        Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
     359
     360        Using makefile: makefile_fast
     361        gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
     362        gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
     363        gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
     364        gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
     365        gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
     366        gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     367        gfortran  rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
     368        ln -sf calc_etadot_fast.out calc_etadot
     369
     370        lrwxrwxrwx. 1 <username> tmc 20 15. Mär 13:31 ./calc_etadot -> calc_etadot_fast.out
     371

  • For_developers/Sphinx/source/Installation/remote.rst

    r30f7911 rb1674ed  
    7777   ssh -X <ecuid>@ecaccess.ecmwf.int
    7878
    79 This will lead to the following output on the command line, asking for your
    80 password:
     79This will lead to the following output on the command line, asking for your password:
    8180   
    8281.. code-block:: bash
    … …  
    117116Execute the ``setup.sh`` script from the ``flex_extract``'s root directory.
    118117Before executing it, it is necessary to adapt some parameters from ``setup.sh``
    119 described in :doc:`Documentation/Input/setup`.
     118described in :doc:`../Documentation/Input/setup`.
    120119
    121 Open ``setup.sh`` with your preferred editor (e.g., ``nano'') and adapt the values: 
     120Open ``setup.sh`` with your preferred editor (e.g., nano) and adapt the values: 
    122121   
    123122+----------------------------------------------+----------------------------------------------+   
    124 |   Use this for target = **ectrans**          |   Use this for target = **cca**              |
     123|   Use this for target = **ectrans**          |   Use this for target = **cca** or **ccb**   |
    125124+----------------------------------------------+----------------------------------------------+
    126125| .. code-block:: bash                         | .. code-block:: bash                         |
    … …  
    133132|   #                                          |   #                                          |
    134133|   TARGET='ecgate'                            |   TARGET='cca'                               |
    135 |   MAKEFILE='Makefile.gfortran'               |   MAKEFILE='Makefile.CRAY'                   | 
    136 |   ECUID='uid'                                |   ECUID='uid'                                | 
    137 |   ECGID='gid'                                |   ECGID='gid'                                |
    138 |   GATEWAY=None                               |   GATEWAY=None                               |
    139 |   DESTINATION=None                           |   DESTINATION=None                           |
     134|   MAKEFILE='makefile_ecgate'                 |   MAKEFILE='makefile_cray'                   | 
     135|   ECUID='<username>'                         |   ECUID='<username>'                         | 
     136|   ECGID='<groupID>'                          |   ECGID='<groupID>'                          |
     137|   GATEWAY='<gatewayname>'                    |   GATEWAY='<gatewayname>'                    |
     138|   DESTINATION='<username>@genericSftp'       |   DESTINATION='<username>@genericSftp'       |
    140139|   INSTALLDIR=None                            |   INSTALLDIR=''                              |
    141140|   JOB_TEMPLATE='job.template'                |   JOB_TEMPLATE='job.template'                |
    … …  
    169168
    170169   
    171 ``Flex_extract`` uses the email address connectd to the user account on ECMWF servers. The email content should look like this with a "SUCCESS" statement in the last line:
     170``Flex_extract`` automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a "SUCCESS" statement in the last line:
    172171
    173172.. code-block:: bash
    174173
    175     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp phgrreal.f
    176     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp grphreal.f
    177     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp ftrafo.f
    178     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g rwGRIB2.f90
    179     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g posnam.f
    180     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g preconvert.f90
    181     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -g -O3 -o ./CONVERT2 ftrafo.o phgrreal.o grphreal.o rwGRIB2.o posnam.o preconvert.o -L/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3   
    182     -rwxr-x---. 1 USER at 353134 May 23 12:27 CONVERT2
    183     SUCCESS!   
    184 
    185 
     174    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
     175    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
     176    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
     177    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
     178    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
     179    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     180    gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
     181    ln -sf calc_etadot_fast.out calc_etadot
     182    lrwxrwxrwx. 1 <username> at 20 Mar  8 14:11 calc_etadot -> calc_etadot_fast.out
     183    SUCCESS!
    186184   
    187 
    188    
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