Ignore:
Timestamp:
Apr 1, 2020, 5:03:13 PM (4 years ago)
Author:
Anne Philipp <anne.philipp@…>
Branches:
master, ctbto, dev
Children:
d78851d, e0005c9
Parents:
50f9ca6
Message:

updated online documentation FIX for tickets #265 and #262

File:
1 edited

Legend:

Unmodified
Added
Removed

  • For_developers/Sphinx/source/Installation/remote.rst

    r30f7911 rb1674ed  
    7777   ssh -X <ecuid>@ecaccess.ecmwf.int
    7878
    79 This will lead to the following output on the command line, asking for your
    80 password:
     79This will lead to the following output on the command line, asking for your password:
    8180   
    8281.. code-block:: bash
    … …  
    117116Execute the ``setup.sh`` script from the ``flex_extract``'s root directory.
    118117Before executing it, it is necessary to adapt some parameters from ``setup.sh``
    119 described in :doc:`Documentation/Input/setup`.
     118described in :doc:`../Documentation/Input/setup`.
    120119
    121 Open ``setup.sh`` with your preferred editor (e.g., ``nano'') and adapt the values: 
     120Open ``setup.sh`` with your preferred editor (e.g., nano) and adapt the values: 
    122121   
    123122+----------------------------------------------+----------------------------------------------+   
    124 |   Use this for target = **ectrans**          |   Use this for target = **cca**              |
     123|   Use this for target = **ectrans**          |   Use this for target = **cca** or **ccb**   |
    125124+----------------------------------------------+----------------------------------------------+
    126125| .. code-block:: bash                         | .. code-block:: bash                         |
    … …  
    133132|   #                                          |   #                                          |
    134133|   TARGET='ecgate'                            |   TARGET='cca'                               |
    135 |   MAKEFILE='Makefile.gfortran'               |   MAKEFILE='Makefile.CRAY'                   | 
    136 |   ECUID='uid'                                |   ECUID='uid'                                | 
    137 |   ECGID='gid'                                |   ECGID='gid'                                |
    138 |   GATEWAY=None                               |   GATEWAY=None                               |
    139 |   DESTINATION=None                           |   DESTINATION=None                           |
     134|   MAKEFILE='makefile_ecgate'                 |   MAKEFILE='makefile_cray'                   | 
     135|   ECUID='<username>'                         |   ECUID='<username>'                         | 
     136|   ECGID='<groupID>'                          |   ECGID='<groupID>'                          |
     137|   GATEWAY='<gatewayname>'                    |   GATEWAY='<gatewayname>'                    |
     138|   DESTINATION='<username>@genericSftp'       |   DESTINATION='<username>@genericSftp'       |
    140139|   INSTALLDIR=None                            |   INSTALLDIR=''                              |
    141140|   JOB_TEMPLATE='job.template'                |   JOB_TEMPLATE='job.template'                |
    … …  
    169168
    170169   
    171 ``Flex_extract`` uses the email address connectd to the user account on ECMWF servers. The email content should look like this with a "SUCCESS" statement in the last line:
     170``Flex_extract`` automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a "SUCCESS" statement in the last line:
    172171
    173172.. code-block:: bash
    174173
    175     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp phgrreal.f
    176     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp grphreal.f
    177     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -g -O3 -fopenmp ftrafo.f
    178     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g rwGRIB2.f90
    179     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g posnam.f
    180     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -c -O3 -I. -I/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/include -g preconvert.f90
    181     gfortran   -m64 -fdefault-real-8 -fcray-pointer -fno-second-underscore  -ffixed-line-length-132 -fopenmp  -fconvert=big-endian  -g -O3 -o ./CONVERT2 ftrafo.o phgrreal.o grphreal.o rwGRIB2.o posnam.o preconvert.o -L/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.12.0/GNU/6.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3   
    182     -rwxr-x---. 1 USER at 353134 May 23 12:27 CONVERT2
    183     SUCCESS!   
    184 
    185 
     174    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
     175    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
     176    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
     177    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
     178    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
     179    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     180    gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
     181    ln -sf calc_etadot_fast.out calc_etadot
     182    lrwxrwxrwx. 1 <username> at 20 Mar  8 14:11 calc_etadot -> calc_etadot_fast.out
     183    SUCCESS!
    186184   
    187 
    188    
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