Changeset c5074d2 in flex_extract.git for templates/compilejob.template

Timestamp:

Oct 9, 2018, 8:42:16 PM (6 years ago)

Author:

Anne Philipp <anne.philipp@…>

Branches:

master, ctbto, dev

Children:

aa275fc

Parents:

0a06607

Message:

added making of namelist file and jobscript via genshi templates

File:

• templates/compilejob.template (modified) (4 diffs)

templates/compilejob.template

@@ -17 +17 @@
 ##PBS -q ns
 ##PBS -S /usr/bin/ksh
-##PBS -o /scratch/ms/$usergroup/$username/flex_ecmwf.$Jobname.$Job_ID.out
+##PBS -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${Jobname}.$${Job_ID}.out
 # job output is in .ecaccess_DO_NOT_REMOVE
 ##PBS -j oe
@@ -26 +26 @@
 set -x
 export VERSION=$version_number
-case $HOST in
+case $${HOST} in
   *ecg*)
   module load python
@@ -41 +41 @@
   module load emos
   module load python
-  echo ${GROUP}
-  echo ${HOME}
-  echo $HOME | awk -F / '{print $1, $2, $3, $4}'
-  export GROUP=`echo $HOME | awk -F / '{print $4}'`
-  export SCRATCH=/scratch/ms/${GROUP}/${USER}
+  echo $${GROUP}
+  echo $${HOME}
+  echo $${HOME} | awk -F / '{print $1, $2, $3, $4}'
+  export GROUP=`echo $${HOME} | awk -F / '{print $4}'`
+  export SCRATCH=/scratch/ms/$${GROUP}/$${USER}
   export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts
   export MAKEFILE=$makefile
@@ -51 +51 @@
 esac
 
-mkdir -p $FLEXPART_ROOT_SCRIPTS/flex_extract_v$VERSION
-cd $FLEXPART_ROOT_SCRIPTS/flex_extract_v$VERSION   # if FLEXPART_ROOT is not set this means cd to the home directory
-tar -xvf $HOME/flex_extract_v$VERSION.tar
+mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION}
+cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION}   # if FLEXPART_ROOT is not set this means cd to the home directory
+tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar
 cd src
 \rm *.o *.mod $fortran_program 
-make -f $MAKEFILE >flexcompile 2>flexcompile
+make -f $${MAKEFILE} >flexcompile 2>flexcompile
 
 ls -l $fortran_program >>flexcompile
-if [ $? -eq 0 ]; then
+if [ $$? -eq 0 ]; then
   echo 'SUCCESS!' >>flexcompile
-  mail -s flexcompile.$HOST.$$ $USER <flexcompile
+  mail -s flexcompile.$${HOST}.$$$$ $${USER} <flexcompile
 else
   echo Environment: >>flexcompile
   env >> flexcompile
-  mail -s "ERROR! flexcompile.$HOST.$$" $USER <flexcompile
+  mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER} <flexcompile
 fi