Ignore:
Timestamp:
Jan 15, 2019, 1:03:37 AM (5 years ago)
Author:
Anne Philipp <anne.philipp@…>
Branches:
master, ctbto, dev
Children:
6f951ca
Parents:
0629ba8
Message:

new build of sphinx for updated api

File:
1 edited

Legend:

Unmodified
Added
Removed

  • documentation/Sphinx/build/html/_modules/install.html

    r274f9ef r2625ca8  
    167167<span class="c1">#        - splitted code in smaller functions</span>
    168168<span class="c1">#        - delete convert build files in here instead of compile job script</span>
    169 <span class="c1">#        - changed static path names to Variables from config file</span>
     169<span class="c1">#        - changed static path names to variables from config file</span>
     170<span class="c1">#        - splitted install function into several smaller pieces</span>
     171<span class="c1">#        - use of tarfile package in python</span>
    170172<span class="c1">#</span>
    171173<span class="c1"># @License:</span>
    172 <span class="c1">#    (C) Copyright 2015-2018.</span>
     174<span class="c1">#    (C) Copyright 2014-2019.</span>
     175<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    173176<span class="c1">#</span>
    174 <span class="c1">#    This software is licensed under the terms of the Apache Licence Version 2.0</span>
    175 <span class="c1">#    which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.</span>
     177<span class="c1">#    This work is licensed under the Creative Commons Attribution 4.0</span>
     178<span class="c1">#    International License. To view a copy of this license, visit</span>
     179<span class="c1">#    http://creativecommons.org/licenses/by/4.0/ or send a letter to</span>
     180<span class="c1">#    Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</span>
    176181<span class="c1">#</span>
    177 <span class="c1"># @Program Functionality:</span>
    178 <span class="c1">#    Depending on the selected installation environment (locally or on the</span>
    179 <span class="c1">#    ECMWF server ecgate or cca) the program extracts the commandline</span>
    180 <span class="c1">#    arguments and the CONTROL file parameter and prepares the corresponding</span>
    181 <span class="c1">#    environment. The necessary files are collected in a tar-ball and placed</span>
    182 <span class="c1">#    at the target location. There its untared, the environment variables will</span>
    183 <span class="c1">#    be set and the Fortran code will be compiled. If the ECMWF environment is</span>
    184 <span class="c1">#    selected a job script is prepared and submitted for the remaining</span>
    185 <span class="c1">#    configurations after putting the tar-ball to the target ECMWF server.</span>
    186 <span class="c1">#</span>
    187 <span class="c1"># @Program Content:</span>
    188 <span class="c1">#    - main</span>
    189 <span class="c1">#    - get_install_cmdline_arguments</span>
    190 <span class="c1">#    - install_via_gateway</span>
    191 <span class="c1">#    - mk_tarball</span>
    192 <span class="c1">#    - un_tarball</span>
    193 <span class="c1">#    - mk_env_vars</span>
    194 <span class="c1">#    - mk_compilejob</span>
    195 <span class="c1">#    - mk_job_template</span>
    196 <span class="c1">#    - delete_convert_build</span>
    197 <span class="c1">#    - make_convert_build</span>
     182<span class="c1"># @Methods:</span>
     183<span class="c1">#    main</span>
     184<span class="c1">#    get_install_cmdline_args</span>
     185<span class="c1">#    install_via_gateway</span>
     186<span class="c1">#    check_install_conditions</span>
     187<span class="c1">#    mk_tarball</span>
     188<span class="c1">#    un_tarball</span>
     189<span class="c1">#    mk_env_vars</span>
     190<span class="c1">#    mk_compilejob</span>
     191<span class="c1">#    mk_job_template</span>
     192<span class="c1">#    del_convert_build</span>
     193<span class="c1">#    mk_convert_build</span>
    198194<span class="c1">#</span>
    199195<span class="c1">#*******************************************************************************</span>
     196<span class="sd">&#39;&#39;&#39;This script installs the flex_extract program.</span>
     197
     198<span class="sd">Depending on the selected installation environment (locally or on the</span>
     199<span class="sd">ECMWF server ecgate or cca) the program extracts the commandline</span>
     200<span class="sd">arguments and the CONTROL file parameter and prepares the corresponding</span>
     201<span class="sd">environment.</span>
     202<span class="sd">The necessary files are collected in a tar-ball and placed</span>
     203<span class="sd">at the target location. There its untared, the environment variables will</span>
     204<span class="sd">be set and the Fortran code will be compiled.</span>
     205<span class="sd">If the ECMWF environment is selected a job script is prepared and submitted</span>
     206<span class="sd">for the remaining configurations after putting the tar-ball to the</span>
     207<span class="sd">target ECMWF server.</span>
     208
     209<span class="sd">Type: install.py --help</span>
     210<span class="sd">to get information about command line parameters.</span>
     211<span class="sd">Read the documentation for usage instructions.</span>
     212<span class="sd">&#39;&#39;&#39;</span>
    200213
    201214<span class="c1"># ------------------------------------------------------------------------------</span>
    … …  
    207220<span class="kn">import</span> <span class="nn">subprocess</span>
    208221<span class="kn">import</span> <span class="nn">inspect</span>
     222<span class="kn">import</span> <span class="nn">tarfile</span>
    209223<span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span>
    210224
    … …  
    213227<span class="kn">from</span> <span class="nn">classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span>
    214228<span class="kn">from</span> <span class="nn">classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
    215 <span class="kn">from</span> <span class="nn">mods.tools</span> <span class="k">import</span> <span class="n">make_dir</span><span class="p">,</span> <span class="n">put_file_to_ecserver</span><span class="p">,</span> <span class="n">submit_job_to_ecserver</span>
     229<span class="kn">from</span> <span class="nn">mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">make_dir</span><span class="p">,</span> <span class="n">put_file_to_ecserver</span><span class="p">,</span> <span class="n">submit_job_to_ecserver</span><span class="p">,</span>
     230                        <span class="n">silent_remove</span><span class="p">,</span> <span class="n">execute_subprocess</span><span class="p">)</span>
    216231
    217232<span class="c1"># ------------------------------------------------------------------------------</span>
    … …  
    229244<span class="sd">    &#39;&#39;&#39;</span>
    230245
    231     <span class="n">args</span> <span class="o">=</span> <span class="n">get_install_cmdline_arguments</span><span class="p">()</span>
     246    <span class="n">args</span> <span class="o">=</span> <span class="n">get_install_cmdline_args</span><span class="p">()</span>
    232247    <span class="n">c</span> <span class="o">=</span> <span class="n">ControlFile</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">controlfile</span><span class="p">)</span>
    233248    <span class="n">c</span><span class="o">.</span><span class="n">assign_args_to_control</span><span class="p">(</span><span class="n">args</span><span class="p">)</span>
    234     <span class="n">c</span><span class="o">.</span><span class="n">check_install_conditions</span><span class="p">()</span>
     249    <span class="n">check_install_conditions</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
    235250
    236251    <span class="n">install_via_gateway</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
    … …  
    238253    <span class="k">return</span></div>
    239254
    240 <div class="viewcode-block" id="get_install_cmdline_arguments"><a class="viewcode-back" href="../api.html#install.get_install_cmdline_arguments">[docs]</a><span class="k">def</span> <span class="nf">get_install_cmdline_arguments</span><span class="p">():</span>
     255<div class="viewcode-block" id="get_install_cmdline_args"><a class="viewcode-back" href="../api.html#install.get_install_cmdline_args">[docs]</a><span class="k">def</span> <span class="nf">get_install_cmdline_args</span><span class="p">():</span>
    241256    <span class="sd">&#39;&#39;&#39;Decomposes the command line arguments and assigns them to variables.</span>
    242257<span class="sd">    Apply default values for non mentioned arguments.</span>
    … …  
    247262<span class="sd">    Return</span>
    248263<span class="sd">    ------</span>
    249 <span class="sd">    args : :obj:`Namespace`</span>
     264<span class="sd">    args : Namespace</span>
    250265<span class="sd">        Contains the commandline arguments from script/program call.</span>
    251266<span class="sd">    &#39;&#39;&#39;</span>
    … …  
    268283                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;ecaccess destination, e.g. leo@genericSftp&#39;</span><span class="p">)</span>
    269284
    270     <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--flexpart_root_scripts&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;flexpart_root_scripts&quot;</span><span class="p">,</span>
     285    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--flexpartdir&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;flexpartdir&quot;</span><span class="p">,</span>
    271286                        <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">help</span><span class="o">=</span><span class="s2">&quot;FLEXPART root directory on ECMWF </span><span class="se">\</span>
    272287<span class="s2">                        servers (to find grib2flexpart and COMMAND file)</span><span class="se">\n\</span>
    … …  
    295310<span class="sd">    Parameters</span>
    296311<span class="sd">    ----------</span>
    297 <span class="sd">    c : :obj:`ControlFile`</span>
     312<span class="sd">    c : ControlFile</span>
    298313<span class="sd">        Contains all the parameters of CONTROL file and</span>
    299314<span class="sd">        command line.</span>
    … …  
    315330
    316331        <span class="n">mk_compilejob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span>
    317                       <span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">)</span>
     332                      <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">)</span>
    318333
    319334        <span class="n">mk_job_template</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span>
    320                         <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">)</span>
     335                        <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">)</span>
    321336
    322337        <span class="n">mk_env_vars</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">)</span>
    … …  
    331346                                            <span class="n">_config</span><span class="o">.</span><span class="n">FILE_INSTALL_COMPILEJOB</span><span class="p">))</span>
    332347
     348        <span class="n">silent_remove</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span>
     349
    333350        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;job compilation script has been submitted to ecgate for &#39;</span> <span class="o">+</span>
    334               <span class="s1">&#39;installation in &#39;</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span> <span class="o">+</span>
     351              <span class="s1">&#39;installation in &#39;</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">+</span>
    335352               <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">target_dirname</span><span class="p">)</span>
    336353        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;You should get an email with subject &quot;flexcompile&quot; within &#39;</span> <span class="o">+</span>
    … …  
    338355
    339356    <span class="k">else</span><span class="p">:</span> <span class="c1">#local</span>
    340         <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="p">:</span>
    341             <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: FLEXPART_ROOT_SCRIPTS has not been specified&#39;</span><span class="p">)</span>
     357        <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="p">:</span>
     358            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: FLEXPARTDIR has not been specified&#39;</span><span class="p">)</span>
    342359            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;flex_extract will be installed in here by compiling the &#39;</span> <span class="o">+</span>
    343360                  <span class="s1">&#39;Fortran source in &#39;</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">)</span>
    344361            <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">)</span>
    345362        <span class="k">else</span><span class="p">:</span> <span class="c1"># creates the target working directory for flex_extract</span>
    346             <span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expandvars</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expanduser</span><span class="p">(</span>
    347                                         <span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">))</span>
    348             <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">ecd</span><span class="p">)</span> <span class="o">!=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">):</span>
     363            <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expandvars</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expanduser</span><span class="p">(</span>
     364                                        <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">))</span>
     365            <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">ecd</span><span class="p">)</span> <span class="o">!=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">):</span>
    349366                <span class="n">mk_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
    350                 <span class="n">make_dir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">,</span>
     367                <span class="n">make_dir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">,</span>
    351368                                      <span class="n">target_dirname</span><span class="p">))</span>
    352                 <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">,</span>
     369                <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">,</span>
    353370                                      <span class="n">target_dirname</span><span class="p">))</span>
    354371                <span class="n">un_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span>
    355                 <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">,</span>
     372                <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">,</span>
    356373                                      <span class="n">target_dirname</span><span class="p">,</span>
    357374                                      <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">))</span>
    … …  
    360377        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Install &#39;</span> <span class="o">+</span> <span class="n">target_dirname</span> <span class="o">+</span> <span class="s1">&#39; software at &#39;</span> <span class="o">+</span>
    361378              <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">+</span> <span class="s1">&#39; in directory &#39;</span> <span class="o">+</span>
    362               <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
    363 
    364         <span class="n">delete_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)</span>
    365         <span class="n">make_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span>
     379              <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
     380
     381        <span class="n">del_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)</span>
     382        <span class="n">mk_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span>
    366383
    367384        <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">ecd</span><span class="p">)</span>
    … …  
    370387
    371388    <span class="k">return</span></div>
     389
     390<div class="viewcode-block" id="check_install_conditions"><a class="viewcode-back" href="../api.html#install.check_install_conditions">[docs]</a><span class="k">def</span> <span class="nf">check_install_conditions</span><span class="p">(</span><span class="n">c</span><span class="p">):</span>
     391    <span class="sd">&#39;&#39;&#39;Checks a couple of necessary attributes and conditions</span>
     392<span class="sd">    for the installation such as if they exist and contain values.</span>
     393<span class="sd">    Otherwise set default values.</span>
     394
     395<span class="sd">    Parameters</span>
     396<span class="sd">    ----------</span>
     397<span class="sd">    c : ControlFile</span>
     398<span class="sd">        Contains all the parameters of CONTROL file and</span>
     399<span class="sd">        command line.</span>
     400
     401
     402<span class="sd">    Return</span>
     403<span class="sd">    ------</span>
     404
     405<span class="sd">    &#39;&#39;&#39;</span>
     406
     407    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">and</span> \
     408       <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_config</span><span class="o">.</span><span class="n">INSTALL_TARGETS</span><span class="p">:</span>
     409        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: unknown or missing installation target &#39;</span><span class="p">)</span>
     410        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;target: &#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
     411        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;please specify correct installation target &#39;</span> <span class="o">+</span>
     412              <span class="nb">str</span><span class="p">(</span><span class="n">INSTALL_TARGETS</span><span class="p">))</span>
     413        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;use -h or --help for help&#39;</span><span class="p">)</span>
     414        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
     415
     416    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">and</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">!=</span> <span class="s1">&#39;local&#39;</span><span class="p">:</span>
     417        <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span> <span class="ow">or</span> \
     418           <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">:</span>
     419            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Please enter your ECMWF user id and group id as well &#39;</span> <span class="o">+</span>
     420                  <span class="s1">&#39;as the </span><span class="se">\n</span><span class="s1">name of the local gateway and the ectrans &#39;</span> <span class="o">+</span>
     421                  <span class="s1">&#39;destination &#39;</span><span class="p">)</span>
     422            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;with command line options --ecuid --ecgid </span><span class="se">\</span>
     423<span class="s1">                   --gateway --destination&#39;</span><span class="p">)</span>
     424            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Try &quot;&#39;</span> <span class="o">+</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> \
     425                  <span class="s1">&#39; -h&quot; to print usage information&#39;</span><span class="p">)</span>
     426            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Please consult ecaccess documentation or ECMWF user </span><span class="se">\</span>
     427<span class="s1">                   support for further details&#39;</span><span class="p">)</span>
     428            <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
     429
     430        <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">:</span>
     431            <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="s1">&#39;$</span><span class="si">{HOME}</span><span class="s1">&#39;</span>
     432        <span class="k">else</span><span class="p">:</span>
     433            <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span>
     434    <span class="k">else</span><span class="p">:</span> <span class="c1"># local</span>
     435        <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">:</span>
     436            <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span>
     437
     438    <span class="k">return</span></div>
     439
    372440
    373441<div class="viewcode-block" id="mk_tarball"><a class="viewcode-back" href="../api.html#install.mk_tarball">[docs]</a><span class="k">def</span> <span class="nf">mk_tarball</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="n">target</span><span class="p">):</span>
    … …  
    381449<span class="sd">    Parameters</span>
    382450<span class="sd">    ----------</span>
    383 <span class="sd">    tarball_path : :obj:`string`</span>
     451<span class="sd">    tarball_path : str</span>
    384452<span class="sd">        The complete path to the tar file which will contain all</span>
    385453<span class="sd">        relevant data for flex_extract.</span>
    386454
    387 <span class="sd">    target : :obj:`string`</span>
     455<span class="sd">    target : str</span>
    388456<span class="sd">        The queue where the job is submitted to.</span>
    389457
    … …  
    392460
    393461<span class="sd">    &#39;&#39;&#39;</span>
    394     <span class="kn">import</span> <span class="nn">tarfile</span>
    395462    <span class="kn">from</span> <span class="nn">glob</span> <span class="k">import</span> <span class="n">glob</span>
    396463
    … …  
    405472    <span class="k">if</span> <span class="n">target</span> <span class="o">==</span> <span class="s1">&#39;local&#39;</span><span class="p">:</span>
    406473        <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[]</span>
     474        <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
     475                   <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
     476                                     <span class="s1">&#39;run_local.sh&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    407477    <span class="k">else</span><span class="p">:</span>
    408478        <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_ECMWF_ENV</span><span class="p">]</span>
     479        <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
     480                       <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
     481                                         <span class="s1">&#39;run.sh&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    409482
    410483    <span class="n">pyfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    411                <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_LOCAL_PYTHON</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     484               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     485    <span class="n">pytestfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
     486               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHONTEST_SRC</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    412487    <span class="n">controlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    413                     <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_CONTROLFILES</span><span class="p">,</span>
     488                    <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_CONTROLFILES</span><span class="p">,</span>
    414489                                      <span class="s1">&#39;CONTROL*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     490    <span class="n">testfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
     491                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span> <span class="p">,</span> <span class="s1">&#39;*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    415492    <span class="n">tempfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    416                  <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     493                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*.temp&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     494    <span class="n">nlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
     495                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*.nl&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     496    <span class="n">gribtable</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
     497                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*grib*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    417498    <span class="n">ffiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    418               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.f*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     499              <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.f*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    419500    <span class="n">hfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    420               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.h&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     501              <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.h&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    421502    <span class="n">makefiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    422                  <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;Makefile*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     503                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;Makefile*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     504    <span class="n">jobdir</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">]</span>
    423505
    424506    <span class="c1"># concatenate single lists to one for a better looping</span>
    425     <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">ffiles</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> \
    426                <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ECMWF_ENV_FILE</span>
     507    <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">nlfiles</span> <span class="o">+</span> \
     508               <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ECMWF_ENV_FILE</span> <span class="o">+</span> \
     509               <span class="n">runfile</span> <span class="o">+</span> <span class="n">jobdir</span> <span class="o">+</span> <span class="n">testfiles</span> <span class="o">+</span>\
     510               <span class="p">[</span><span class="s1">&#39;CODE_OF_CONDUCT.md&#39;</span><span class="p">,</span> <span class="s1">&#39;LICENSE.md&#39;</span><span class="p">,</span> <span class="s1">&#39;README.md&#39;</span><span class="p">]</span>
    427511
    428512    <span class="c1"># create installation tar-file</span>
     513    <span class="n">exclude_files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.ksh&quot;</span><span class="p">]</span>
    429514    <span class="k">try</span><span class="p">:</span>
    430515        <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="s2">&quot;w:gz&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span>
    431516            <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">filelist</span><span class="p">:</span>
    432                 <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
    433 
     517                <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">file</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
     518                               <span class="nb">filter</span><span class="o">=</span><span class="k">lambda</span> <span class="n">tarinfo</span><span class="p">:</span> <span class="kc">None</span>
     519                                      <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">tarinfo</span><span class="o">.</span><span class="n">name</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
     520                                         <span class="ow">in</span> <span class="n">exclude_files</span>
     521                                      <span class="k">else</span> <span class="n">tarinfo</span><span class="p">)</span>
    434522    <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
    435523        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE:</span><span class="se">\n</span><span class="s1"> ... &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">returncode</span><span class="p">))</span>
    436524        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> ... &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
    437525
    438         <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;... could not make installation tar ball!&#39;</span><span class="p">)</span>
     526        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... could not make installation tar ball!&#39;</span><span class="p">)</span>
     527    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     528        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     529        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     530
     531        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file &#39;</span> <span class="o">+</span>
     532                 <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
    439533
    440534    <span class="k">return</span></div>
    … …  
    446540<span class="sd">    Parameters</span>
    447541<span class="sd">    ----------</span>
    448 <span class="sd">    tarball_path : :obj:`string`</span>
     542<span class="sd">    tarball_path : str</span>
    449543<span class="sd">        The complete path to the tar file which will contain all</span>
    450544<span class="sd">        relevant data for flex_extract.</span>
    … …  
    454548
    455549<span class="sd">    &#39;&#39;&#39;</span>
    456     <span class="kn">import</span> <span class="nn">tarfile</span>
    457550
    458551    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Untar ...&#39;</span><span class="p">)</span>
    459552
    460     <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span>
    461         <span class="n">tar_handle</span><span class="o">.</span><span class="n">extractall</span><span class="p">()</span>
     553    <span class="k">try</span><span class="p">:</span>
     554        <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span>
     555            <span class="n">tar_handle</span><span class="o">.</span><span class="n">extractall</span><span class="p">()</span>
     556    <span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     557        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file &#39;</span> <span class="o">+</span>
     558                     <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
     559    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     560        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     561        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     562
     563        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file &#39;</span> <span class="o">+</span>
     564                 <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
    462565
    463566    <span class="k">return</span></div>
    … …  
    470573<span class="sd">    Parameters</span>
    471574<span class="sd">    ----------</span>
    472 <span class="sd">    ecuid : :obj:`string`</span>
     575<span class="sd">    ecuid : str</span>
    473576<span class="sd">        The user id on ECMWF server.</span>
    474577
    475 <span class="sd">    ecgid : :obj:`string`</span>
     578<span class="sd">    ecgid : str</span>
    476579<span class="sd">        The group id on ECMWF server.</span>
    477580
    478 <span class="sd">    gateway : :obj:`string`</span>
     581<span class="sd">    gateway : str</span>
    479582<span class="sd">        The gateway server the user is using.</span>
    480583
    481 <span class="sd">    destination : :obj:`string`</span>
     584<span class="sd">    destination : str</span>
    482585<span class="sd">        The remote destination which is used to transfer files</span>
    483586<span class="sd">        from ECMWF server to local gateway server.</span>
    … …  
    489592    <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span>
    490593    <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span>  <span class="n">TemplateLoader</span>
    491 
    492     <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
    493     <span class="n">ecmwfvars_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_USER_ENVVARS</span><span class="p">,</span>
    494                                      <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
    495 
    496     <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
    497                                        <span class="n">user_group</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
    498                                        <span class="n">gateway_name</span> <span class="o">=</span> <span class="n">gateway</span><span class="p">,</span>
    499                                        <span class="n">destination_name</span> <span class="o">=</span> <span class="n">destination</span>
    500                                        <span class="p">)</span>
    501 
    502     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
    503         <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
     594    <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span> <span class="n">UndefinedError</span>
     595
     596    <span class="k">try</span><span class="p">:</span>
     597        <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
     598        <span class="n">ecmwfvars_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_USER_ENVVARS</span><span class="p">,</span>
     599                                         <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
     600
     601        <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
     602                                             <span class="n">user_group</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
     603                                             <span class="n">gateway_name</span> <span class="o">=</span> <span class="n">gateway</span><span class="p">,</span>
     604                                             <span class="n">destination_name</span> <span class="o">=</span> <span class="n">destination</span>
     605                                             <span class="p">)</span>
     606    <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     607        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
     608
     609        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
     610                 <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span>
     611    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     612        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     613        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     614
     615        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
     616                 <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span>
     617
     618    <span class="k">try</span><span class="p">:</span>
     619        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
     620            <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
     621    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     622        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     623        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     624
     625        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to write &#39;</span> <span class="o">+</span>
     626                 <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span>
    504627
    505628    <span class="k">return</span></div>
    … …  
    512635<span class="sd">    Parameters</span>
    513636<span class="sd">    ----------</span>
    514 <span class="sd">    makefile : :obj:`string`</span>
     637<span class="sd">    makefile : str</span>
    515638<span class="sd">        Name of the makefile which should be used to compile FORTRAN</span>
    516639<span class="sd">        CONVERT2 program.</span>
    517640
    518 <span class="sd">    target : :obj:`string`</span>
     641<span class="sd">    target : str</span>
    519642<span class="sd">        The target where the installation should be done, e.g. the queue.</span>
    520643
    521 <span class="sd">    ecuid : :obj:`string`</span>
     644<span class="sd">    ecuid : str</span>
    522645<span class="sd">        The user id on ECMWF server.</span>
    523646
    524 <span class="sd">    ecgid : :obj:`string`</span>
     647<span class="sd">    ecgid : str</span>
    525648<span class="sd">        The group id on ECMWF server.</span>
    526649
    527 <span class="sd">    fp_root : :obj:`string`</span>
     650<span class="sd">    fp_root : str</span>
    528651<span class="sd">       Path to the root directory of FLEXPART environment or flex_extract</span>
    529652<span class="sd">       environment.</span>
    … …  
    535658    <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span>
    536659    <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span>  <span class="n">TemplateLoader</span>
    537 
    538     <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
    539     <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">,</span>
    540                                    <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
     660    <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span>  <span class="n">UndefinedError</span>
    541661
    542662    <span class="k">if</span> <span class="n">fp_root</span> <span class="o">==</span> <span class="s1">&#39;../&#39;</span><span class="p">:</span>
    543663        <span class="n">fp_root</span> <span class="o">=</span> <span class="s1">&#39;$HOME&#39;</span>
    544664
    545     <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
    546         <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
    547         <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
    548         <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
    549         <span class="n">fp_root_scripts</span> <span class="o">=</span> <span class="n">fp_root</span><span class="p">,</span>
    550         <span class="n">makefile</span> <span class="o">=</span> <span class="n">makefile</span><span class="p">,</span>
    551         <span class="n">fortran_program</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span>
    552     <span class="p">)</span>
    553 
    554     <span class="n">compilejob</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span>
    555                               <span class="n">_config</span><span class="o">.</span><span class="n">FILE_INSTALL_COMPILEJOB</span><span class="p">)</span>
    556 
    557     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">compilejob</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
    558         <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
     665    <span class="k">try</span><span class="p">:</span>
     666        <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
     667        <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">,</span>
     668                                       <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
     669
     670        <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
     671            <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
     672            <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
     673            <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
     674            <span class="n">fp_root_scripts</span> <span class="o">=</span> <span class="n">fp_root</span><span class="p">,</span>
     675            <span class="n">makefile</span> <span class="o">=</span> <span class="n">makefile</span><span class="p">,</span>
     676            <span class="n">fortran_program</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span>
     677        <span class="p">)</span>
     678    <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     679        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
     680
     681        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
     682                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">)</span>
     683    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     684        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     685        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     686
     687        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
     688                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">)</span>
     689
     690    <span class="k">try</span><span class="p">:</span>
     691        <span class="n">compilejob</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span>
     692                                  <span class="n">_config</span><span class="o">.</span><span class="n">FILE_INSTALL_COMPILEJOB</span><span class="p">)</span>
     693
     694        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">compilejob</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
     695            <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
     696    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     697        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     698        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     699
     700        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to write &#39;</span> <span class="o">+</span>
     701                 <span class="n">compilejob</span><span class="p">)</span>
    559702
    560703    <span class="k">return</span></div>
    … …  
    567710<span class="sd">    Parameters</span>
    568711<span class="sd">    ----------</span>
    569 <span class="sd">    ecuid : :obj:`string`</span>
     712<span class="sd">    ecuid : str</span>
    570713<span class="sd">        The user id on ECMWF server.</span>
    571714
    572 <span class="sd">    ecgid : :obj:`string`</span>
     715<span class="sd">    ecgid : str</span>
    573716<span class="sd">        The group id on ECMWF server.</span>
    574717
    575 <span class="sd">    gateway : :obj:`string`</span>
     718<span class="sd">    gateway : str</span>
    576719<span class="sd">        The gateway server the user is using.</span>
    577720
    578 <span class="sd">    destination : :obj:`string`</span>
     721<span class="sd">    destination : str</span>
    579722<span class="sd">        The remote destination which is used to transfer files</span>
    580723<span class="sd">        from ECMWF server to local gateway server.</span>
    581724
    582 <span class="sd">    fp_root : :obj:`string`</span>
     725<span class="sd">    fp_root : str</span>
    583726<span class="sd">       Path to the root directory of FLEXPART environment or flex_extract</span>
    584727<span class="sd">       environment.</span>
    … …  
    590733    <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span>
    591734    <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span>  <span class="n">TemplateLoader</span>
    592 
    593     <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
    594     <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">,</span>
    595                                    <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
     735    <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span>  <span class="n">UndefinedError</span>
    596736
    597737    <span class="n">fp_root_path_to_python</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">fp_root</span><span class="p">,</span>
    598738                                          <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
    599                                           <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON</span><span class="p">)</span>
    600 
    601     <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
    602         <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
    603         <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
    604         <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
    605         <span class="n">fp_root_path</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">,</span>
    606     <span class="p">)</span>
    607 
    608     <span class="n">tempjobfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span>
    609                                <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_JOB</span><span class="p">)</span>
    610 
    611     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">tempjobfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
    612         <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
     739                                          <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">)</span>
     740    <span class="k">if</span> <span class="s1">&#39;$&#39;</span> <span class="ow">in</span> <span class="n">fp_root_path_to_python</span><span class="p">:</span>
     741        <span class="n">ind</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;$&#39;</span><span class="p">)</span>
     742        <span class="n">fp_root_path_to_python</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">ind</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;$&#39;</span> <span class="o">+</span> \
     743                                 <span class="n">fp_root_path_to_python</span><span class="p">[</span><span class="n">ind</span><span class="p">:]</span>
     744
     745    <span class="k">try</span><span class="p">:</span>
     746        <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
     747        <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">,</span>
     748                                       <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
     749
     750        <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
     751            <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
     752            <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
     753            <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
     754            <span class="n">fp_root_path</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">,</span>
     755        <span class="p">)</span>
     756    <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     757        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
     758
     759        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
     760                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">)</span>
     761    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     762        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     763        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     764
     765        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
     766                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">)</span>
     767
     768
     769    <span class="k">try</span><span class="p">:</span>
     770        <span class="n">tempjobfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span>
     771                                   <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_JOB</span><span class="p">)</span>
     772
     773        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">tempjobfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
     774            <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
     775    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
     776        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
     777        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
     778
     779        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to write &#39;</span> <span class="o">+</span>
     780                 <span class="n">tempjobfile</span><span class="p">)</span>
    613781
    614782    <span class="k">return</span></div>
    615783
    616 <div class="viewcode-block" id="delete_convert_build"><a class="viewcode-back" href="../api.html#install.delete_convert_build">[docs]</a><span class="k">def</span> <span class="nf">delete_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span>
     784<div class="viewcode-block" id="del_convert_build"><a class="viewcode-back" href="../api.html#install.del_convert_build">[docs]</a><span class="k">def</span> <span class="nf">del_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span>
    617785    <span class="sd">&#39;&#39;&#39;Clean up the Fortran source directory and remove all</span>
    618786<span class="sd">    build files (e.g. \*.o, \*.mod and CONVERT2)</span>
    … …  
    620788<span class="sd">    Parameters</span>
    621789<span class="sd">    ----------</span>
    622 <span class="sd">    src_path : :obj:`string`</span>
     790<span class="sd">    src_path : str</span>
    623791<span class="sd">        Path to the fortran source directory.</span>
    624792
    … …  
    638806    <span class="k">return</span></div>
    639807
    640 <div class="viewcode-block" id="make_convert_build"><a class="viewcode-back" href="../api.html#install.make_convert_build">[docs]</a><span class="k">def</span> <span class="nf">make_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span>
     808<div class="viewcode-block" id="mk_convert_build"><a class="viewcode-back" href="../api.html#install.mk_convert_build">[docs]</a><span class="k">def</span> <span class="nf">mk_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span>
    641809    <span class="sd">&#39;&#39;&#39;Compiles the Fortran code and generates the executable.</span>
    642810
    643811<span class="sd">    Parameters</span>
    644812<span class="sd">    ----------</span>
    645 <span class="sd">    src_path : :obj:`string`</span>
     813<span class="sd">    src_path : str</span>
    646814<span class="sd">        Path to the fortran source directory.</span>
    647815
    648 <span class="sd">    makefile : :obj:`string`</span>
     816<span class="sd">    makefile : str</span>
    649817<span class="sd">        The name of the makefile which should be used.</span>
    650818
    … …  
    677845        <span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
    678846    <span class="k">else</span><span class="p">:</span>
    679         <span class="n">subprocess</span><span class="o">.</span><span class="n">check_call</span><span class="p">([</span><span class="s1">&#39;ls&#39;</span><span class="p">,</span> <span class="s1">&#39;-l&#39;</span><span class="p">,</span>
    680                                <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span>
    681                                             <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)])</span>
     847        <span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">&#39;ls&#39;</span><span class="p">,</span> <span class="s1">&#39;-l&#39;</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span>
     848                            <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span> <span class="n">error_msg</span><span class="o">=</span>
     849                           <span class="s1">&#39;FORTRAN EXECUTABLE COULD NOT BE FOUND!&#39;</span><span class="p">)</span>
    682850
    683851    <span class="k">return</span></div>
    … …  
    698866  <div role="contentinfo">
    699867    <p>
    700         &copy; Copyright 2018, Anne Philipp and Leopold Haimberger.
     868        &copy; Copyright 2018, Anne Philipp and Leopold Haimberger
    701869
    702870    </p>
    … …  
    717885 
    718886
    719     <script type="text/javascript">
    720         var DOCUMENTATION_OPTIONS = {
    721             URL_ROOT:'../',
    722             VERSION:'7.1 alpha',
    723             LANGUAGE:'None',
    724             COLLAPSE_INDEX:false,
    725             FILE_SUFFIX:'.html',
    726             HAS_SOURCE:  true,
    727             SOURCELINK_SUFFIX: '.txt'
    728         };
    729     </script>
    730       <script type="text/javascript" src="../_static/jquery.js"></script>
    731       <script type="text/javascript" src="../_static/underscore.js"></script>
    732       <script type="text/javascript" src="../_static/doctools.js"></script>
    733       <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
     887   
     888   
     889      <script type="text/javascript" id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
     890        <script type="text/javascript" src="../_static/jquery.js"></script>
     891        <script type="text/javascript" src="../_static/underscore.js"></script>
     892        <script type="text/javascript" src="../_static/doctools.js"></script>
     893   
    734894
    735895 
Note: See TracChangeset for help on using the changeset viewer.
hosted by ZAMG