source: flex_extract.git/templates/job.template @ ad10eca

#!/bin/ksh

# ON ECGB:
# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
# start with sbatch NAME_OF_THIS_FILE directly on machine

#SBATCH --workdir=/scratch/ms/$usergroup/$username
#SBATCH --qos=normal
#SBATCH --job-name=flex_ecmwf
#SBATCH --output=flex_ecmwf.%j.out
#SBATCH --error=flex_ecmwf.%j.out
#SBATCH --mail-type=FAIL
#SBATCH --time=12:00:00

## CRAY specific batch requests
##PBS -N flex_ecmwf
##PBS -q np
##PBS -S /usr/bin/ksh
## -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${PBS_JOBID}.out
## job output is in .ecaccess_DO_NOT_REMOVE
##PBS -j oe
##PBS -V
##PBS -l EC_threads_per_task=24
##PBS -l EC_memory_per_task=32000MB

set -x
export VERSION=$version_number
case $${HOST} in
  *ecg*)
  module load python
  module unload grib_api
  module unload eccodes
  module unload emos
  module load grib_api/1.26.1
  module load emos/457-r64
  export PATH=$${PATH}:$fp_root_path
  ;;
  *cca*)
  module switch PrgEnv-cray PrgEnv-intel
  module load grib_api
  module load emos
  module load python
  export SCRATCH=$${TMPDIR}
  export PATH=$${PATH}:$fp_root_path
  ;;
esac

cd $${SCRATCH}
mkdir -p python$$$$
cd python$$$$

export CONTROL=CONTROL

cat >$${CONTROL}<<EOF
EOF


submit.py --controlfile=$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1

if [ $? -eq 0 ] ; then
  l=0
  for muser in `grep -i MAILOPS $${CONTROL}`; do
      if [ $${l} -gt 0 ] ; then 
         mail -s flex.$${HOST}.$$$$ $${muser} <prot
      fi
      l=$(($${l}+1))
  done
else
  l=0
  for muser in `grep -i MAILFAIL $${CONTROL}`; do
      if [ $${l} -gt 0 ] ; then 
         mail -s "ERROR! flex.$${HOST}.$$$$" $${muser} <prot
      fi
      l=$(($${l}+1))
  done
fi