source: flex_extract.git/templates/job.template @ ad10eca

ctbtodev
Last change on this file since ad10eca was e585e1b, checked in by Anne Philipp <anne.philipp@…>, 5 years ago

new testrun

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File size: 1.7 KB
Line 
1#!/bin/ksh
2
3# ON ECGB:
4# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
5# start with sbatch NAME_OF_THIS_FILE directly on machine
6
7#SBATCH --workdir=/scratch/ms/$usergroup/$username
8#SBATCH --qos=normal
9#SBATCH --job-name=flex_ecmwf
10#SBATCH --output=flex_ecmwf.%j.out
11#SBATCH --error=flex_ecmwf.%j.out
12#SBATCH --mail-type=FAIL
13#SBATCH --time=12:00:00
14
15## CRAY specific batch requests
16##PBS -N flex_ecmwf
17##PBS -q np
18##PBS -S /usr/bin/ksh
19## -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${PBS_JOBID}.out
20## job output is in .ecaccess_DO_NOT_REMOVE
21##PBS -j oe
22##PBS -V
23##PBS -l EC_threads_per_task=24
24##PBS -l EC_memory_per_task=32000MB
25
26set -x
27export VERSION=$version_number
28case $${HOST} in
29  *ecg*)
30  module load python
31  module unload grib_api
32  module unload eccodes
33  module unload emos
34  module load grib_api/1.26.1
35  module load emos/457-r64
36  export PATH=$${PATH}:$fp_root_path
37  ;;
38  *cca*)
39  module switch PrgEnv-cray PrgEnv-intel
40  module load grib_api
41  module load emos
42  module load python
43  export SCRATCH=$${TMPDIR}
44  export PATH=$${PATH}:$fp_root_path
45  ;;
46esac
47
48cd $${SCRATCH}
49mkdir -p python$$$$
50cd python$$$$
51
52export CONTROL=CONTROL
53
54cat >$${CONTROL}<<EOF
55EOF
56
57
58submit.py --controlfile=$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1
59
60if [ $? -eq 0 ] ; then
61  l=0
62  for muser in `grep -i MAILOPS $${CONTROL}`; do
63      if [ $${l} -gt 0 ] ; then 
64         mail -s flex.$${HOST}.$$$$ $${muser} <prot
65      fi
66      l=$(($${l}+1))
67  done
68else
69  l=0
70  for muser in `grep -i MAILFAIL $${CONTROL}`; do
71      if [ $${l} -gt 0 ] ; then 
72         mail -s "ERROR! flex.$${HOST}.$$$$" $${muser} <prot
73      fi
74      l=$(($${l}+1))
75  done
76fi
77
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