source:
flex_extract.git/templates/job.temp
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b02a07e
Last change on this file since b02a07e was b02a07e, checked in by Anne Philipp <anne.philipp@…>, 5 years ago | |
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[34b247b] | 1 | #!/bin/ksh |
2 | ||
3 | # ON ECGB: | |
4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server | |
5 | # start with sbatch NAME_OF_THIS_FILE directly on machine | |
6 | ||
7 | #SBATCH --workdir=/scratch/ms/at/km4a | |
8 | #SBATCH --qos=normal | |
9 | #SBATCH --job-name=flex_ecmwf | |
10 | #SBATCH --output=flex_ecmwf.%j.out | |
11 | #SBATCH --error=flex_ecmwf.%j.out | |
12 | #SBATCH --mail-type=FAIL | |
13 | #SBATCH --time=12:00:00 | |
14 | ||
15 | ## CRAY specific batch requests | |
16 | ##PBS -N flex_ecmwf | |
17 | ##PBS -q np | |
18 | ##PBS -S /usr/bin/ksh | |
[b02a07e] | 19 | ## -o /scratch/ms/at/km4a/flex_ecmwf.$${PBS_JOBID}.out |
[34b247b] | 20 | ## job output is in .ecaccess_DO_NOT_REMOVE |
21 | ##PBS -j oe | |
22 | ##PBS -V | |
23 | ##PBS -l EC_threads_per_task=24 | |
24 | ##PBS -l EC_memory_per_task=32000MB | |
25 | ||
26 | set -x | |
27 | export VERSION=7.1 | |
[b02a07e] | 28 | case $${HOST} in |
[34b247b] | 29 | *ecg*) |
30 | module load python | |
31 | module unload grib_api | |
[c97d8ec] | 32 | module unload eccodes |
[b02a07e] | 33 | module load eccodes |
[34b247b] | 34 | module unload emos |
[b02a07e] | 35 | module load emos/455-r64 |
36 | export PATH=$${PATH}:$${HOME}/flex_extract_v7.1/source/python | |
[34b247b] | 37 | ;; |
38 | *cca*) | |
39 | module switch PrgEnv-cray PrgEnv-intel | |
[b02a07e] | 40 | module load eccodes |
[34b247b] | 41 | module load emos |
42 | module load python | |
[b02a07e] | 43 | export SCRATCH=$${TMPDIR} |
44 | export PATH=$${PATH}:$${HOME}/flex_extract_v7.1/source/python | |
[34b247b] | 45 | ;; |
46 | esac | |
47 | ||
[b02a07e] | 48 | cd $${SCRATCH} |
49 | mkdir -p python$$$$ | |
50 | cd python$$$$ | |
[34b247b] | 51 | |
52 | export CONTROL=CONTROL | |
53 | ||
[b02a07e] | 54 | cat >$${CONTROL}<<EOF |
55 | $control_content | |
[34b247b] | 56 | EOF |
57 | ||
58 | ||
[b02a07e] | 59 | submit.py --controlfile=$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1 |
[34b247b] | 60 | |
61 | if [ $? -eq 0 ] ; then | |
62 | l=0 | |
[b02a07e] | 63 | for muser in `grep -i MAILOPS $${CONTROL}`; do |
64 | if [ $${l} -gt 0 ] ; then | |
65 | mail -s flex.$${HOST}.$$$$ $${muser} <prot | |
[34b247b] | 66 | fi |
[b02a07e] | 67 | l=$(($${l}+1)) |
[34b247b] | 68 | done |
69 | else | |
70 | l=0 | |
[b02a07e] | 71 | for muser in `grep -i MAILFAIL $${CONTROL}`; do |
72 | if [ $${l} -gt 0 ] ; then | |
73 | mail -s "ERROR! flex.$${HOST}.$$$$" $${muser} <prot | |
[34b247b] | 74 | fi |
[b02a07e] | 75 | l=$(($${l}+1)) |
[34b247b] | 76 | done |
77 | fi | |
78 |
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