source: flex_extract.git/templates/job.temp @ b02a07e

ctbtodev
Last change on this file since b02a07e was b02a07e, checked in by Anne Philipp <anne.philipp@…>, 5 years ago

updated temporarily unchanged files (update-index) of everchanging files for a merge

  • Property mode set to 100644
File size: 1.7 KB
Line 
1#!/bin/ksh
2
3# ON ECGB:
4# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
5# start with sbatch NAME_OF_THIS_FILE directly on machine
6
7#SBATCH --workdir=/scratch/ms/at/km4a
8#SBATCH --qos=normal
9#SBATCH --job-name=flex_ecmwf
10#SBATCH --output=flex_ecmwf.%j.out
11#SBATCH --error=flex_ecmwf.%j.out
12#SBATCH --mail-type=FAIL
13#SBATCH --time=12:00:00
14
15## CRAY specific batch requests
16##PBS -N flex_ecmwf
17##PBS -q np
18##PBS -S /usr/bin/ksh
19## -o /scratch/ms/at/km4a/flex_ecmwf.$${PBS_JOBID}.out
20## job output is in .ecaccess_DO_NOT_REMOVE
21##PBS -j oe
22##PBS -V
23##PBS -l EC_threads_per_task=24
24##PBS -l EC_memory_per_task=32000MB
25
26set -x
27export VERSION=7.1
28case $${HOST} in
29  *ecg*)
30  module load python
31  module unload grib_api
32  module unload eccodes
33  module load eccodes
34  module unload emos
35  module load emos/455-r64
36  export PATH=$${PATH}:$${HOME}/flex_extract_v7.1/source/python
37  ;;
38  *cca*)
39  module switch PrgEnv-cray PrgEnv-intel
40  module load eccodes
41  module load emos
42  module load python
43  export SCRATCH=$${TMPDIR}
44  export PATH=$${PATH}:$${HOME}/flex_extract_v7.1/source/python
45  ;;
46esac
47
48cd $${SCRATCH}
49mkdir -p python$$$$
50cd python$$$$
51
52export CONTROL=CONTROL
53
54cat >$${CONTROL}<<EOF
55$control_content
56EOF
57
58
59submit.py --controlfile=$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1
60
61if [ $? -eq 0 ] ; then
62  l=0
63  for muser in `grep -i MAILOPS $${CONTROL}`; do
64      if [ $${l} -gt 0 ] ; then 
65         mail -s flex.$${HOST}.$$$$ $${muser} <prot
66      fi
67      l=$(($${l}+1))
68  done
69else
70  l=0
71  for muser in `grep -i MAILFAIL $${CONTROL}`; do
72      if [ $${l} -gt 0 ] ; then 
73         mail -s "ERROR! flex.$${HOST}.$$$$" $${muser} <prot
74      fi
75      l=$(($${l}+1))
76  done
77fi
78
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