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53 | </a> |
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58 | <div class="version"> |
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59 | 7.1 |
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60 | </div> |
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84 | <ul> |
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85 | <li class="toctree-l1"><a class="reference internal" href="../downloads.html">Downloads</a></li> |
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86 | <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li> |
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137 | |
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138 | <li>install</li> |
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153 | <h1>Source code for install</h1><div class="highlight"><pre> |
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154 | <span></span><span class="ch">#!/usr/bin/env python</span> |
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155 | <span class="c1"># -*- coding: utf-8 -*-</span> |
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156 | <span class="c1">#*******************************************************************************</span> |
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157 | <span class="c1"># @Author: Leopold Haimberger (University of Vienna)</span> |
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158 | <span class="c1">#</span> |
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159 | <span class="c1"># @Date: November 2015</span> |
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160 | <span class="c1">#</span> |
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161 | <span class="c1"># @Change History:</span> |
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162 | <span class="c1">#</span> |
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163 | <span class="c1"># February 2018 - Anne Philipp (University of Vienna):</span> |
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164 | <span class="c1"># - applied PEP8 style guide</span> |
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165 | <span class="c1"># - added documentation</span> |
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166 | <span class="c1"># - moved install_args_and_control in here</span> |
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167 | <span class="c1"># - splitted code in smaller functions</span> |
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168 | <span class="c1"># - delete convert build files in here instead of compile job script</span> |
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169 | <span class="c1"># - changed static path names to variables from config file</span> |
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170 | <span class="c1"># - splitted install function into several smaller pieces</span> |
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171 | <span class="c1"># - use of tarfile package in python</span> |
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172 | <span class="c1">#</span> |
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173 | <span class="c1"># @License:</span> |
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174 | <span class="c1"># (C) Copyright 2014-2019.</span> |
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175 | <span class="c1"># Anne Philipp, Leopold Haimberger</span> |
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176 | <span class="c1">#</span> |
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177 | <span class="c1"># This work is licensed under the Creative Commons Attribution 4.0</span> |
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178 | <span class="c1"># International License. To view a copy of this license, visit</span> |
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179 | <span class="c1"># http://creativecommons.org/licenses/by/4.0/ or send a letter to</span> |
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180 | <span class="c1"># Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</span> |
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181 | <span class="c1">#</span> |
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182 | <span class="c1"># @Methods:</span> |
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183 | <span class="c1"># main</span> |
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184 | <span class="c1"># get_install_cmdline_args</span> |
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185 | <span class="c1"># install_via_gateway</span> |
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186 | <span class="c1"># check_install_conditions</span> |
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187 | <span class="c1"># mk_tarball</span> |
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188 | <span class="c1"># un_tarball</span> |
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189 | <span class="c1"># mk_env_vars</span> |
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190 | <span class="c1"># mk_compilejob</span> |
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191 | <span class="c1"># mk_job_template</span> |
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192 | <span class="c1"># del_convert_build</span> |
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193 | <span class="c1"># mk_convert_build</span> |
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194 | <span class="c1">#</span> |
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195 | <span class="c1">#*******************************************************************************</span> |
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196 | <span class="sd">'''This script installs the flex_extract program.</span> |
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197 | |
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198 | <span class="sd">Depending on the selected installation environment (locally or on the</span> |
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199 | <span class="sd">ECMWF server ecgate or cca) the program extracts the commandline</span> |
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200 | <span class="sd">arguments and the CONTROL file parameter and prepares the corresponding</span> |
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201 | <span class="sd">environment.</span> |
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202 | <span class="sd">The necessary files are collected in a tar-ball and placed</span> |
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203 | <span class="sd">at the target location. There its untared, the environment variables will</span> |
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204 | <span class="sd">be set and the Fortran code will be compiled.</span> |
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205 | <span class="sd">If the ECMWF environment is selected a job script is prepared and submitted</span> |
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206 | <span class="sd">for the remaining configurations after putting the tar-ball to the</span> |
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207 | <span class="sd">target ECMWF server.</span> |
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208 | |
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209 | <span class="sd">Type: install.py --help</span> |
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210 | <span class="sd">to get information about command line parameters.</span> |
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211 | <span class="sd">Read the documentation for usage instructions.</span> |
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212 | <span class="sd">'''</span> |
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213 | |
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214 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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215 | <span class="c1"># MODULES</span> |
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216 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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217 | <span class="kn">import</span> <span class="nn">os</span> |
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218 | <span class="kn">import</span> <span class="nn">sys</span> |
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219 | <span class="kn">import</span> <span class="nn">glob</span> |
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220 | <span class="kn">import</span> <span class="nn">subprocess</span> |
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221 | <span class="kn">import</span> <span class="nn">inspect</span> |
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222 | <span class="kn">import</span> <span class="nn">tarfile</span> |
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223 | <span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span> |
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224 | |
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225 | <span class="c1"># software specific classes and modules from flex_extract</span> |
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226 | <span class="kn">import</span> <span class="nn">_config</span> |
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227 | <span class="kn">from</span> <span class="nn">classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span> |
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228 | <span class="kn">from</span> <span class="nn">classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span> |
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229 | <span class="kn">from</span> <span class="nn">mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">make_dir</span><span class="p">,</span> <span class="n">put_file_to_ecserver</span><span class="p">,</span> <span class="n">submit_job_to_ecserver</span><span class="p">,</span> |
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230 | <span class="n">silent_remove</span><span class="p">,</span> <span class="n">execute_subprocess</span><span class="p">)</span> |
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231 | |
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232 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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233 | <span class="c1"># FUNCTIONS</span> |
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234 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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235 | <div class="viewcode-block" id="main"><a class="viewcode-back" href="../api.html#install.main">[docs]</a><span class="k">def</span> <span class="nf">main</span><span class="p">():</span> |
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236 | <span class="sd">'''Controls the installation process. Calls the installation function</span> |
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237 | <span class="sd"> if target is specified.</span> |
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238 | |
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239 | <span class="sd"> Parameters</span> |
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240 | <span class="sd"> ----------</span> |
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241 | |
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242 | <span class="sd"> Return</span> |
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243 | <span class="sd"> ------</span> |
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244 | <span class="sd"> '''</span> |
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245 | |
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246 | <span class="n">args</span> <span class="o">=</span> <span class="n">get_install_cmdline_args</span><span class="p">()</span> |
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247 | <span class="n">c</span> <span class="o">=</span> <span class="n">ControlFile</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">controlfile</span><span class="p">)</span> |
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248 | <span class="n">c</span><span class="o">.</span><span class="n">assign_args_to_control</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> |
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249 | <span class="n">check_install_conditions</span><span class="p">(</span><span class="n">c</span><span class="p">)</span> |
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250 | |
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251 | <span class="n">install_via_gateway</span><span class="p">(</span><span class="n">c</span><span class="p">)</span> |
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252 | |
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253 | <span class="k">return</span></div> |
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254 | |
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255 | <div class="viewcode-block" id="get_install_cmdline_args"><a class="viewcode-back" href="../api.html#install.get_install_cmdline_args">[docs]</a><span class="k">def</span> <span class="nf">get_install_cmdline_args</span><span class="p">():</span> |
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256 | <span class="sd">'''Decomposes the command line arguments and assigns them to variables.</span> |
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257 | <span class="sd"> Apply default values for non mentioned arguments.</span> |
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258 | |
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259 | <span class="sd"> Parameters</span> |
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260 | <span class="sd"> ----------</span> |
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261 | |
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262 | <span class="sd"> Return</span> |
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263 | <span class="sd"> ------</span> |
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264 | <span class="sd"> args : Namespace</span> |
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265 | <span class="sd"> Contains the commandline arguments from script/program call.</span> |
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266 | <span class="sd"> '''</span> |
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267 | <span class="n">parser</span> <span class="o">=</span> <span class="n">ArgumentParser</span><span class="p">(</span><span class="n">description</span><span class="o">=</span><span class="s1">'Install flex_extract software locally or </span><span class="se">\</span> |
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268 | <span class="s1"> on ECMWF machines'</span><span class="p">,</span> |
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269 | <span class="n">formatter_class</span><span class="o">=</span><span class="n">ArgumentDefaultsHelpFormatter</span><span class="p">)</span> |
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270 | |
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271 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">'--target'</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s1">'install_target'</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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272 | <span class="n">help</span><span class="o">=</span><span class="s2">"Valid targets: local | ecgate | cca , </span><span class="se">\</span> |
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273 | <span class="s2"> the latter two are at ECMWF"</span><span class="p">)</span> |
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274 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--makefile"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"makefile"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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275 | <span class="n">help</span><span class="o">=</span><span class="s1">'Name of Makefile to use for compiling CONVERT2'</span><span class="p">)</span> |
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276 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--ecuid"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"ecuid"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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277 | <span class="n">help</span><span class="o">=</span><span class="s1">'user id at ECMWF'</span><span class="p">)</span> |
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278 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--ecgid"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"ecgid"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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279 | <span class="n">help</span><span class="o">=</span><span class="s1">'group id at ECMWF'</span><span class="p">)</span> |
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280 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--gateway"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"gateway"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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281 | <span class="n">help</span><span class="o">=</span><span class="s1">'name of local gateway server'</span><span class="p">)</span> |
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282 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--destination"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"destination"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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283 | <span class="n">help</span><span class="o">=</span><span class="s1">'ecaccess destination, e.g. leo@genericSftp'</span><span class="p">)</span> |
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284 | |
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285 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--flexpartdir"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"flexpartdir"</span><span class="p">,</span> |
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286 | <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">help</span><span class="o">=</span><span class="s2">"FLEXPART root directory on ECMWF </span><span class="se">\</span> |
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287 | <span class="s2"> servers (to find grib2flexpart and COMMAND file)</span><span class="se">\n\</span> |
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288 | <span class="s2"> Normally flex_extract resides in the scripts directory </span><span class="se">\</span> |
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289 | <span class="s2"> of the FLEXPART distribution."</span><span class="p">)</span> |
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290 | |
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291 | <span class="c1"># arguments for job submission to ECMWF, only needed by submit.py</span> |
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292 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--job_template"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s1">'job_template'</span><span class="p">,</span> |
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293 | <span class="n">default</span><span class="o">=</span><span class="s2">"job.temp.o"</span><span class="p">,</span> |
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294 | <span class="n">help</span><span class="o">=</span><span class="s2">"job template file for submission to ECMWF"</span><span class="p">)</span> |
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295 | |
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296 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--controlfile"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"controlfile"</span><span class="p">,</span> |
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297 | <span class="n">default</span><span class="o">=</span><span class="s1">'CONTROL.temp'</span><span class="p">,</span> |
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298 | <span class="n">help</span><span class="o">=</span><span class="s2">"file with CONTROL parameters"</span><span class="p">)</span> |
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299 | |
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300 | <span class="n">args</span> <span class="o">=</span> <span class="n">parser</span><span class="o">.</span><span class="n">parse_args</span><span class="p">()</span> |
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301 | |
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302 | <span class="k">return</span> <span class="n">args</span></div> |
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303 | |
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304 | |
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305 | <div class="viewcode-block" id="install_via_gateway"><a class="viewcode-back" href="../api.html#install.install_via_gateway">[docs]</a><span class="k">def</span> <span class="nf">install_via_gateway</span><span class="p">(</span><span class="n">c</span><span class="p">):</span> |
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306 | <span class="sd">'''Perform the actual installation on local machine or prepare data</span> |
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307 | <span class="sd"> transfer to remote gate and submit a job script which will</span> |
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308 | <span class="sd"> install everything on the remote gate.</span> |
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309 | |
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310 | <span class="sd"> Parameters</span> |
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311 | <span class="sd"> ----------</span> |
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312 | <span class="sd"> c : ControlFile</span> |
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313 | <span class="sd"> Contains all the parameters of CONTROL file and</span> |
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314 | <span class="sd"> command line.</span> |
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315 | |
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316 | <span class="sd"> Return</span> |
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317 | <span class="sd"> ------</span> |
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318 | |
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319 | <span class="sd"> '''</span> |
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320 | <span class="kn">import</span> <span class="nn">tarfile</span> |
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321 | |
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322 | <span class="n">ecd</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> |
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323 | <span class="n">tarball_name</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">'.tar'</span> |
---|
324 | <span class="n">tar_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">ecd</span><span class="p">,</span> <span class="n">tarball_name</span><span class="p">)</span> |
---|
325 | |
---|
326 | <span class="n">target_dirname</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> |
---|
327 | <span class="n">fortran_executable</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span> |
---|
328 | |
---|
329 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">!=</span> <span class="s1">'local'</span><span class="p">:</span> <span class="c1"># ecgate or cca</span> |
---|
330 | |
---|
331 | <span class="n">mk_compilejob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> |
---|
332 | <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">)</span> |
---|
333 | |
---|
334 | <span class="n">mk_job_template</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span> |
---|
335 | <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">)</span> |
---|
336 | |
---|
337 | <span class="n">mk_env_vars</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">)</span> |
---|
338 | |
---|
339 | <span class="n">mk_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span> |
---|
340 | |
---|
341 | <span class="n">put_file_to_ecserver</span><span class="p">(</span><span class="n">ecd</span><span class="p">,</span> <span class="n">tarball_name</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> |
---|
342 | <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">)</span> |
---|
343 | |
---|
344 | <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> |
---|
345 | <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">,</span> |
---|
346 | <span class="n">_config</span><span class="o">.</span><span class="n">FILE_INSTALL_COMPILEJOB</span><span class="p">))</span> |
---|
347 | |
---|
348 | <span class="n">silent_remove</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span> |
---|
349 | |
---|
350 | <span class="nb">print</span><span class="p">(</span><span class="s1">'job compilation script has been submitted to ecgate for '</span> <span class="o">+</span> |
---|
351 | <span class="s1">'installation in '</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">+</span> |
---|
352 | <span class="s1">'/'</span> <span class="o">+</span> <span class="n">target_dirname</span><span class="p">)</span> |
---|
353 | <span class="nb">print</span><span class="p">(</span><span class="s1">'You should get an email with subject "flexcompile" within '</span> <span class="o">+</span> |
---|
354 | <span class="s1">'the next few minutes!'</span><span class="p">)</span> |
---|
355 | |
---|
356 | <span class="k">else</span><span class="p">:</span> <span class="c1">#local</span> |
---|
357 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="p">:</span> |
---|
358 | <span class="nb">print</span><span class="p">(</span><span class="s1">'WARNING: FLEXPARTDIR has not been specified'</span><span class="p">)</span> |
---|
359 | <span class="nb">print</span><span class="p">(</span><span class="s1">'flex_extract will be installed in here by compiling the '</span> <span class="o">+</span> |
---|
360 | <span class="s1">'Fortran source in '</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">)</span> |
---|
361 | <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">)</span> |
---|
362 | <span class="k">else</span><span class="p">:</span> <span class="c1"># creates the target working directory for flex_extract</span> |
---|
363 | <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expandvars</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expanduser</span><span class="p">(</span> |
---|
364 | <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">))</span> |
---|
365 | <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">ecd</span><span class="p">)</span> <span class="o">!=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">):</span> |
---|
366 | <span class="n">mk_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span> |
---|
367 | <span class="n">make_dir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">,</span> |
---|
368 | <span class="n">target_dirname</span><span class="p">))</span> |
---|
369 | <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">,</span> |
---|
370 | <span class="n">target_dirname</span><span class="p">))</span> |
---|
371 | <span class="n">un_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span> |
---|
372 | <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">,</span> |
---|
373 | <span class="n">target_dirname</span><span class="p">,</span> |
---|
374 | <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">))</span> |
---|
375 | |
---|
376 | <span class="c1"># Create Fortran executable - CONVERT2</span> |
---|
377 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Install '</span> <span class="o">+</span> <span class="n">target_dirname</span> <span class="o">+</span> <span class="s1">' software at '</span> <span class="o">+</span> |
---|
378 | <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">+</span> <span class="s1">' in directory '</span> <span class="o">+</span> |
---|
379 | <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">)</span> <span class="o">+</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="p">)</span> |
---|
380 | |
---|
381 | <span class="n">del_convert_build</span><span class="p">(</span><span class="s1">'.'</span><span class="p">)</span> |
---|
382 | <span class="n">mk_convert_build</span><span class="p">(</span><span class="s1">'.'</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span> |
---|
383 | |
---|
384 | <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">ecd</span><span class="p">)</span> |
---|
385 | <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isfile</span><span class="p">(</span><span class="n">tar_file</span><span class="p">):</span> |
---|
386 | <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span> |
---|
387 | |
---|
388 | <span class="k">return</span></div> |
---|
389 | |
---|
390 | <div class="viewcode-block" id="check_install_conditions"><a class="viewcode-back" href="../api.html#install.check_install_conditions">[docs]</a><span class="k">def</span> <span class="nf">check_install_conditions</span><span class="p">(</span><span class="n">c</span><span class="p">):</span> |
---|
391 | <span class="sd">'''Checks a couple of necessary attributes and conditions</span> |
---|
392 | <span class="sd"> for the installation such as if they exist and contain values.</span> |
---|
393 | <span class="sd"> Otherwise set default values.</span> |
---|
394 | |
---|
395 | <span class="sd"> Parameters</span> |
---|
396 | <span class="sd"> ----------</span> |
---|
397 | <span class="sd"> c : ControlFile</span> |
---|
398 | <span class="sd"> Contains all the parameters of CONTROL file and</span> |
---|
399 | <span class="sd"> command line.</span> |
---|
400 | |
---|
401 | |
---|
402 | <span class="sd"> Return</span> |
---|
403 | <span class="sd"> ------</span> |
---|
404 | |
---|
405 | <span class="sd"> '''</span> |
---|
406 | |
---|
407 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">and</span> \ |
---|
408 | <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_config</span><span class="o">.</span><span class="n">INSTALL_TARGETS</span><span class="p">:</span> |
---|
409 | <span class="nb">print</span><span class="p">(</span><span class="s1">'ERROR: unknown or missing installation target '</span><span class="p">)</span> |
---|
410 | <span class="nb">print</span><span class="p">(</span><span class="s1">'target: '</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span> |
---|
411 | <span class="nb">print</span><span class="p">(</span><span class="s1">'please specify correct installation target '</span> <span class="o">+</span> |
---|
412 | <span class="nb">str</span><span class="p">(</span><span class="n">INSTALL_TARGETS</span><span class="p">))</span> |
---|
413 | <span class="nb">print</span><span class="p">(</span><span class="s1">'use -h or --help for help'</span><span class="p">)</span> |
---|
414 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> |
---|
415 | |
---|
416 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">and</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">!=</span> <span class="s1">'local'</span><span class="p">:</span> |
---|
417 | <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span> <span class="ow">or</span> \ |
---|
418 | <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">:</span> |
---|
419 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Please enter your ECMWF user id and group id as well '</span> <span class="o">+</span> |
---|
420 | <span class="s1">'as the </span><span class="se">\n</span><span class="s1">name of the local gateway and the ectrans '</span> <span class="o">+</span> |
---|
421 | <span class="s1">'destination '</span><span class="p">)</span> |
---|
422 | <span class="nb">print</span><span class="p">(</span><span class="s1">'with command line options --ecuid --ecgid </span><span class="se">\</span> |
---|
423 | <span class="s1"> --gateway --destination'</span><span class="p">)</span> |
---|
424 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Try "'</span> <span class="o">+</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> \ |
---|
425 | <span class="s1">' -h" to print usage information'</span><span class="p">)</span> |
---|
426 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Please consult ecaccess documentation or ECMWF user </span><span class="se">\</span> |
---|
427 | <span class="s1"> support for further details'</span><span class="p">)</span> |
---|
428 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> |
---|
429 | |
---|
430 | <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">:</span> |
---|
431 | <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{HOME}</span><span class="s1">'</span> |
---|
432 | <span class="k">else</span><span class="p">:</span> |
---|
433 | <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> |
---|
434 | <span class="k">else</span><span class="p">:</span> <span class="c1"># local</span> |
---|
435 | <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span><span class="p">:</span> |
---|
436 | <span class="n">c</span><span class="o">.</span><span class="n">flexpartdir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> |
---|
437 | |
---|
438 | <span class="k">return</span></div> |
---|
439 | |
---|
440 | |
---|
441 | <div class="viewcode-block" id="mk_tarball"><a class="viewcode-back" href="../api.html#install.mk_tarball">[docs]</a><span class="k">def</span> <span class="nf">mk_tarball</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="n">target</span><span class="p">):</span> |
---|
442 | <span class="sd">'''Creates a tarball with all necessary files which need to be sent to the</span> |
---|
443 | <span class="sd"> installation directory.</span> |
---|
444 | <span class="sd"> It does not matter if this is local or remote.</span> |
---|
445 | <span class="sd"> Collects all python files, the Fortran source and makefiles,</span> |
---|
446 | <span class="sd"> the ECMWF_ENV file, the CONTROL files as well as the</span> |
---|
447 | <span class="sd"> template files.</span> |
---|
448 | |
---|
449 | <span class="sd"> Parameters</span> |
---|
450 | <span class="sd"> ----------</span> |
---|
451 | <span class="sd"> tarball_path : str</span> |
---|
452 | <span class="sd"> The complete path to the tar file which will contain all</span> |
---|
453 | <span class="sd"> relevant data for flex_extract.</span> |
---|
454 | |
---|
455 | <span class="sd"> target : str</span> |
---|
456 | <span class="sd"> The queue where the job is submitted to.</span> |
---|
457 | |
---|
458 | <span class="sd"> Return</span> |
---|
459 | <span class="sd"> ------</span> |
---|
460 | |
---|
461 | <span class="sd"> '''</span> |
---|
462 | <span class="kn">from</span> <span class="nn">glob</span> <span class="k">import</span> <span class="n">glob</span> |
---|
463 | |
---|
464 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Create tarball ...'</span><span class="p">)</span> |
---|
465 | |
---|
466 | <span class="c1"># change to FLEXEXTRACT directory so that the tar can contain</span> |
---|
467 | <span class="c1"># relative pathes to the files and directories</span> |
---|
468 | <span class="n">ecd</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="o">+</span> <span class="s1">'/'</span> |
---|
469 | <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">ecd</span><span class="p">)</span> |
---|
470 | |
---|
471 | <span class="c1"># get lists of the files to be added to the tar file</span> |
---|
472 | <span class="k">if</span> <span class="n">target</span> <span class="o">==</span> <span class="s1">'local'</span><span class="p">:</span> |
---|
473 | <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[]</span> |
---|
474 | <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
475 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span> |
---|
476 | <span class="s1">'run_local.sh'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
477 | <span class="k">else</span><span class="p">:</span> |
---|
478 | <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_ECMWF_ENV</span><span class="p">]</span> |
---|
479 | <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
480 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span> |
---|
481 | <span class="s1">'run.sh'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
482 | |
---|
483 | <span class="n">pyfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
484 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">,</span> <span class="s1">'*py'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
485 | <span class="n">pytestfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
486 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHONTEST_SRC</span><span class="p">,</span> <span class="s1">'*py'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
487 | <span class="n">controlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
488 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_CONTROLFILES</span><span class="p">,</span> |
---|
489 | <span class="s1">'CONTROL*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
490 | <span class="n">testfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
491 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span> <span class="p">,</span> <span class="s1">'*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
492 | <span class="n">tempfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
493 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">'*.temp'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
494 | <span class="n">nlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
495 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">'*.nl'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
496 | <span class="n">gribtable</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
497 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">'*grib*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
498 | <span class="n">ffiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
499 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'*.f*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
500 | <span class="n">hfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
501 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'*.h'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
502 | <span class="n">makefiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span> |
---|
503 | <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'Makefile*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span> |
---|
504 | <span class="n">jobdir</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">]</span> |
---|
505 | |
---|
506 | <span class="c1"># concatenate single lists to one for a better looping</span> |
---|
507 | <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">nlfiles</span> <span class="o">+</span> \ |
---|
508 | <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ECMWF_ENV_FILE</span> <span class="o">+</span> \ |
---|
509 | <span class="n">runfile</span> <span class="o">+</span> <span class="n">jobdir</span> <span class="o">+</span> <span class="n">testfiles</span> <span class="o">+</span>\ |
---|
510 | <span class="p">[</span><span class="s1">'CODE_OF_CONDUCT.md'</span><span class="p">,</span> <span class="s1">'LICENSE.md'</span><span class="p">,</span> <span class="s1">'README.md'</span><span class="p">]</span> |
---|
511 | |
---|
512 | <span class="c1"># create installation tar-file</span> |
---|
513 | <span class="n">exclude_files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">".ksh"</span><span class="p">]</span> |
---|
514 | <span class="k">try</span><span class="p">:</span> |
---|
515 | <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="s2">"w:gz"</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span> |
---|
516 | <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">filelist</span><span class="p">:</span> |
---|
517 | <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">file</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> |
---|
518 | <span class="nb">filter</span><span class="o">=</span><span class="k">lambda</span> <span class="n">tarinfo</span><span class="p">:</span> <span class="kc">None</span> |
---|
519 | <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">tarinfo</span><span class="o">.</span><span class="n">name</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span> |
---|
520 | <span class="ow">in</span> <span class="n">exclude_files</span> |
---|
521 | <span class="k">else</span> <span class="n">tarinfo</span><span class="p">)</span> |
---|
522 | <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
523 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE:</span><span class="se">\n</span><span class="s1"> ... '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">returncode</span><span class="p">))</span> |
---|
524 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> ... '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span> |
---|
525 | |
---|
526 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... could not make installation tar ball!'</span><span class="p">)</span> |
---|
527 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
528 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
529 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
530 | |
---|
531 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file '</span> <span class="o">+</span> |
---|
532 | <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span> |
---|
533 | |
---|
534 | <span class="k">return</span></div> |
---|
535 | |
---|
536 | |
---|
537 | <div class="viewcode-block" id="un_tarball"><a class="viewcode-back" href="../api.html#install.un_tarball">[docs]</a><span class="k">def</span> <span class="nf">un_tarball</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">):</span> |
---|
538 | <span class="sd">'''Extracts the given tarball into current directory.</span> |
---|
539 | |
---|
540 | <span class="sd"> Parameters</span> |
---|
541 | <span class="sd"> ----------</span> |
---|
542 | <span class="sd"> tarball_path : str</span> |
---|
543 | <span class="sd"> The complete path to the tar file which will contain all</span> |
---|
544 | <span class="sd"> relevant data for flex_extract.</span> |
---|
545 | |
---|
546 | <span class="sd"> Return</span> |
---|
547 | <span class="sd"> ------</span> |
---|
548 | |
---|
549 | <span class="sd"> '''</span> |
---|
550 | |
---|
551 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Untar ...'</span><span class="p">)</span> |
---|
552 | |
---|
553 | <span class="k">try</span><span class="p">:</span> |
---|
554 | <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span> |
---|
555 | <span class="n">tar_handle</span><span class="o">.</span><span class="n">extractall</span><span class="p">()</span> |
---|
556 | <span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
557 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file '</span> <span class="o">+</span> |
---|
558 | <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span> |
---|
559 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
560 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
561 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
562 | |
---|
563 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file '</span> <span class="o">+</span> |
---|
564 | <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span> |
---|
565 | |
---|
566 | <span class="k">return</span></div> |
---|
567 | |
---|
568 | <div class="viewcode-block" id="mk_env_vars"><a class="viewcode-back" href="../api.html#install.mk_env_vars">[docs]</a><span class="k">def</span> <span class="nf">mk_env_vars</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">gateway</span><span class="p">,</span> <span class="n">destination</span><span class="p">):</span> |
---|
569 | <span class="sd">'''Creates a file named ECMWF_ENV which contains the</span> |
---|
570 | <span class="sd"> necessary environmental variables at ECMWF servers.</span> |
---|
571 | <span class="sd"> It is based on the template ECMWF_ENV.template.</span> |
---|
572 | |
---|
573 | <span class="sd"> Parameters</span> |
---|
574 | <span class="sd"> ----------</span> |
---|
575 | <span class="sd"> ecuid : str</span> |
---|
576 | <span class="sd"> The user id on ECMWF server.</span> |
---|
577 | |
---|
578 | <span class="sd"> ecgid : str</span> |
---|
579 | <span class="sd"> The group id on ECMWF server.</span> |
---|
580 | |
---|
581 | <span class="sd"> gateway : str</span> |
---|
582 | <span class="sd"> The gateway server the user is using.</span> |
---|
583 | |
---|
584 | <span class="sd"> destination : str</span> |
---|
585 | <span class="sd"> The remote destination which is used to transfer files</span> |
---|
586 | <span class="sd"> from ECMWF server to local gateway server.</span> |
---|
587 | |
---|
588 | <span class="sd"> Return</span> |
---|
589 | <span class="sd"> ------</span> |
---|
590 | |
---|
591 | <span class="sd"> '''</span> |
---|
592 | <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span> |
---|
593 | <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span> <span class="n">TemplateLoader</span> |
---|
594 | <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span> <span class="n">UndefinedError</span> |
---|
595 | |
---|
596 | <span class="k">try</span><span class="p">:</span> |
---|
597 | <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span> |
---|
598 | <span class="n">ecmwfvars_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_USER_ENVVARS</span><span class="p">,</span> |
---|
599 | <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span> |
---|
600 | |
---|
601 | <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span> |
---|
602 | <span class="n">user_group</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span> |
---|
603 | <span class="n">gateway_name</span> <span class="o">=</span> <span class="n">gateway</span><span class="p">,</span> |
---|
604 | <span class="n">destination_name</span> <span class="o">=</span> <span class="n">destination</span> |
---|
605 | <span class="p">)</span> |
---|
606 | <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
607 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span> |
---|
608 | |
---|
609 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template '</span> <span class="o">+</span> |
---|
610 | <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span> |
---|
611 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
612 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
613 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
614 | |
---|
615 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template '</span> <span class="o">+</span> |
---|
616 | <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span> |
---|
617 | |
---|
618 | <span class="k">try</span><span class="p">:</span> |
---|
619 | <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span> |
---|
620 | <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">'text'</span><span class="p">))</span> |
---|
621 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
622 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
623 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
624 | |
---|
625 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to write '</span> <span class="o">+</span> |
---|
626 | <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span> |
---|
627 | |
---|
628 | <span class="k">return</span></div> |
---|
629 | |
---|
630 | <div class="viewcode-block" id="mk_compilejob"><a class="viewcode-back" href="../api.html#install.mk_compilejob">[docs]</a><span class="k">def</span> <span class="nf">mk_compilejob</span><span class="p">(</span><span class="n">makefile</span><span class="p">,</span> <span class="n">target</span><span class="p">,</span> <span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span> |
---|
631 | <span class="sd">'''Modifies the original job template file so that it is specified</span> |
---|
632 | <span class="sd"> for the user and the environment were it will be applied. Result</span> |
---|
633 | <span class="sd"> is stored in a new file "job.temp" in the python directory.</span> |
---|
634 | |
---|
635 | <span class="sd"> Parameters</span> |
---|
636 | <span class="sd"> ----------</span> |
---|
637 | <span class="sd"> makefile : str</span> |
---|
638 | <span class="sd"> Name of the makefile which should be used to compile FORTRAN</span> |
---|
639 | <span class="sd"> CONVERT2 program.</span> |
---|
640 | |
---|
641 | <span class="sd"> target : str</span> |
---|
642 | <span class="sd"> The target where the installation should be done, e.g. the queue.</span> |
---|
643 | |
---|
644 | <span class="sd"> ecuid : str</span> |
---|
645 | <span class="sd"> The user id on ECMWF server.</span> |
---|
646 | |
---|
647 | <span class="sd"> ecgid : str</span> |
---|
648 | <span class="sd"> The group id on ECMWF server.</span> |
---|
649 | |
---|
650 | <span class="sd"> fp_root : str</span> |
---|
651 | <span class="sd"> Path to the root directory of FLEXPART environment or flex_extract</span> |
---|
652 | <span class="sd"> environment.</span> |
---|
653 | |
---|
654 | <span class="sd"> Return</span> |
---|
655 | <span class="sd"> ------</span> |
---|
656 | |
---|
657 | <span class="sd"> '''</span> |
---|
658 | <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span> |
---|
659 | <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span> <span class="n">TemplateLoader</span> |
---|
660 | <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span> <span class="n">UndefinedError</span> |
---|
661 | |
---|
662 | <span class="k">if</span> <span class="n">fp_root</span> <span class="o">==</span> <span class="s1">'../'</span><span class="p">:</span> |
---|
663 | <span class="n">fp_root</span> <span class="o">=</span> <span class="s1">'$HOME'</span> |
---|
664 | |
---|
665 | <span class="k">try</span><span class="p">:</span> |
---|
666 | <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span> |
---|
667 | <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">,</span> |
---|
668 | <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span> |
---|
669 | |
---|
670 | <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span> |
---|
671 | <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span> |
---|
672 | <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span> |
---|
673 | <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span> |
---|
674 | <span class="n">fp_root_scripts</span> <span class="o">=</span> <span class="n">fp_root</span><span class="p">,</span> |
---|
675 | <span class="n">makefile</span> <span class="o">=</span> <span class="n">makefile</span><span class="p">,</span> |
---|
676 | <span class="n">fortran_program</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span> |
---|
677 | <span class="p">)</span> |
---|
678 | <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
679 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span> |
---|
680 | |
---|
681 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template '</span> <span class="o">+</span> |
---|
682 | <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">)</span> |
---|
683 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
684 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
685 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
686 | |
---|
687 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template '</span> <span class="o">+</span> |
---|
688 | <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">)</span> |
---|
689 | |
---|
690 | <span class="k">try</span><span class="p">:</span> |
---|
691 | <span class="n">compilejob</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span> |
---|
692 | <span class="n">_config</span><span class="o">.</span><span class="n">FILE_INSTALL_COMPILEJOB</span><span class="p">)</span> |
---|
693 | |
---|
694 | <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">compilejob</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span> |
---|
695 | <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">'text'</span><span class="p">))</span> |
---|
696 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
697 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
698 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
699 | |
---|
700 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to write '</span> <span class="o">+</span> |
---|
701 | <span class="n">compilejob</span><span class="p">)</span> |
---|
702 | |
---|
703 | <span class="k">return</span></div> |
---|
704 | |
---|
705 | <div class="viewcode-block" id="mk_job_template"><a class="viewcode-back" href="../api.html#install.mk_job_template">[docs]</a><span class="k">def</span> <span class="nf">mk_job_template</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">gateway</span><span class="p">,</span> <span class="n">destination</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span> |
---|
706 | <span class="sd">'''Modifies the original job template file so that it is specified</span> |
---|
707 | <span class="sd"> for the user and the environment were it will be applied. Result</span> |
---|
708 | <span class="sd"> is stored in a new file.</span> |
---|
709 | |
---|
710 | <span class="sd"> Parameters</span> |
---|
711 | <span class="sd"> ----------</span> |
---|
712 | <span class="sd"> ecuid : str</span> |
---|
713 | <span class="sd"> The user id on ECMWF server.</span> |
---|
714 | |
---|
715 | <span class="sd"> ecgid : str</span> |
---|
716 | <span class="sd"> The group id on ECMWF server.</span> |
---|
717 | |
---|
718 | <span class="sd"> gateway : str</span> |
---|
719 | <span class="sd"> The gateway server the user is using.</span> |
---|
720 | |
---|
721 | <span class="sd"> destination : str</span> |
---|
722 | <span class="sd"> The remote destination which is used to transfer files</span> |
---|
723 | <span class="sd"> from ECMWF server to local gateway server.</span> |
---|
724 | |
---|
725 | <span class="sd"> fp_root : str</span> |
---|
726 | <span class="sd"> Path to the root directory of FLEXPART environment or flex_extract</span> |
---|
727 | <span class="sd"> environment.</span> |
---|
728 | |
---|
729 | <span class="sd"> Return</span> |
---|
730 | <span class="sd"> ------</span> |
---|
731 | |
---|
732 | <span class="sd"> '''</span> |
---|
733 | <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span> |
---|
734 | <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span> <span class="n">TemplateLoader</span> |
---|
735 | <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span> <span class="n">UndefinedError</span> |
---|
736 | |
---|
737 | <span class="n">fp_root_path_to_python</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">fp_root</span><span class="p">,</span> |
---|
738 | <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span> |
---|
739 | <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">)</span> |
---|
740 | <span class="k">if</span> <span class="s1">'$'</span> <span class="ow">in</span> <span class="n">fp_root_path_to_python</span><span class="p">:</span> |
---|
741 | <span class="n">ind</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">'$'</span><span class="p">)</span> |
---|
742 | <span class="n">fp_root_path_to_python</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">ind</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'$'</span> <span class="o">+</span> \ |
---|
743 | <span class="n">fp_root_path_to_python</span><span class="p">[</span><span class="n">ind</span><span class="p">:]</span> |
---|
744 | |
---|
745 | <span class="k">try</span><span class="p">:</span> |
---|
746 | <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span> |
---|
747 | <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">,</span> |
---|
748 | <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span> |
---|
749 | |
---|
750 | <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span> |
---|
751 | <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span> |
---|
752 | <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span> |
---|
753 | <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span> |
---|
754 | <span class="n">fp_root_path</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">,</span> |
---|
755 | <span class="p">)</span> |
---|
756 | <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
757 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span> |
---|
758 | |
---|
759 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template '</span> <span class="o">+</span> |
---|
760 | <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">)</span> |
---|
761 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
762 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
763 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
764 | |
---|
765 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template '</span> <span class="o">+</span> |
---|
766 | <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">)</span> |
---|
767 | |
---|
768 | |
---|
769 | <span class="k">try</span><span class="p">:</span> |
---|
770 | <span class="n">tempjobfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> |
---|
771 | <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_JOB</span><span class="p">)</span> |
---|
772 | |
---|
773 | <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">tempjobfile</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span> |
---|
774 | <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">'text'</span><span class="p">))</span> |
---|
775 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
776 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
---|
777 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
---|
778 | |
---|
779 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to write '</span> <span class="o">+</span> |
---|
780 | <span class="n">tempjobfile</span><span class="p">)</span> |
---|
781 | |
---|
782 | <span class="k">return</span></div> |
---|
783 | |
---|
784 | <div class="viewcode-block" id="del_convert_build"><a class="viewcode-back" href="../api.html#install.del_convert_build">[docs]</a><span class="k">def</span> <span class="nf">del_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span> |
---|
785 | <span class="sd">'''Clean up the Fortran source directory and remove all</span> |
---|
786 | <span class="sd"> build files (e.g. \*.o, \*.mod and CONVERT2)</span> |
---|
787 | |
---|
788 | <span class="sd"> Parameters</span> |
---|
789 | <span class="sd"> ----------</span> |
---|
790 | <span class="sd"> src_path : str</span> |
---|
791 | <span class="sd"> Path to the fortran source directory.</span> |
---|
792 | |
---|
793 | <span class="sd"> Return</span> |
---|
794 | <span class="sd"> ------</span> |
---|
795 | |
---|
796 | <span class="sd"> '''</span> |
---|
797 | |
---|
798 | <span class="n">modfiles</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="s1">'*.mod'</span><span class="p">)</span> |
---|
799 | <span class="n">objfiles</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="s1">'*.o'</span><span class="p">)</span> |
---|
800 | <span class="n">exefile</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)</span> |
---|
801 | |
---|
802 | <span class="n">modfiles</span><span class="o">.</span><span class="n">delete_files</span><span class="p">()</span> |
---|
803 | <span class="n">objfiles</span><span class="o">.</span><span class="n">delete_files</span><span class="p">()</span> |
---|
804 | <span class="n">exefile</span><span class="o">.</span><span class="n">delete_files</span><span class="p">()</span> |
---|
805 | |
---|
806 | <span class="k">return</span></div> |
---|
807 | |
---|
808 | <div class="viewcode-block" id="mk_convert_build"><a class="viewcode-back" href="../api.html#install.mk_convert_build">[docs]</a><span class="k">def</span> <span class="nf">mk_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span> |
---|
809 | <span class="sd">'''Compiles the Fortran code and generates the executable.</span> |
---|
810 | |
---|
811 | <span class="sd"> Parameters</span> |
---|
812 | <span class="sd"> ----------</span> |
---|
813 | <span class="sd"> src_path : str</span> |
---|
814 | <span class="sd"> Path to the fortran source directory.</span> |
---|
815 | |
---|
816 | <span class="sd"> makefile : str</span> |
---|
817 | <span class="sd"> The name of the makefile which should be used.</span> |
---|
818 | |
---|
819 | <span class="sd"> Return</span> |
---|
820 | <span class="sd"> ------</span> |
---|
821 | |
---|
822 | <span class="sd"> '''</span> |
---|
823 | |
---|
824 | <span class="k">try</span><span class="p">:</span> |
---|
825 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Using makefile: '</span> <span class="o">+</span> <span class="n">makefile</span><span class="p">)</span> |
---|
826 | <span class="n">p</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">Popen</span><span class="p">([</span><span class="s1">'make'</span><span class="p">,</span> <span class="s1">'-f'</span><span class="p">,</span> |
---|
827 | <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">)],</span> |
---|
828 | <span class="n">stdin</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span> |
---|
829 | <span class="n">stdout</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span> |
---|
830 | <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span> |
---|
831 | <span class="n">bufsize</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span> |
---|
832 | <span class="n">pout</span><span class="p">,</span> <span class="n">perr</span> <span class="o">=</span> <span class="n">p</span><span class="o">.</span><span class="n">communicate</span><span class="p">()</span> |
---|
833 | <span class="nb">print</span><span class="p">(</span><span class="n">pout</span><span class="p">)</span> |
---|
834 | <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span> |
---|
835 | <span class="nb">print</span><span class="p">(</span><span class="n">perr</span><span class="p">)</span> |
---|
836 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Please edit '</span> <span class="o">+</span> <span class="n">makefile</span> <span class="o">+</span> |
---|
837 | <span class="s1">' or try another Makefile in the src directory.'</span><span class="p">)</span> |
---|
838 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Most likely GRIB_API_INCLUDE_DIR, GRIB_API_LIB '</span> |
---|
839 | <span class="s1">'and EMOSLIB must be adapted.'</span><span class="p">)</span> |
---|
840 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Available Makefiles:'</span><span class="p">)</span> |
---|
841 | <span class="nb">print</span><span class="p">(</span><span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="s1">'Makefile*'</span><span class="p">))</span> |
---|
842 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'Compilation failed!'</span><span class="p">)</span> |
---|
843 | <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
844 | <span class="nb">print</span><span class="p">(</span><span class="s1">'ERROR: Makefile call failed:'</span><span class="p">)</span> |
---|
845 | <span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span> |
---|
846 | <span class="k">else</span><span class="p">:</span> |
---|
847 | <span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">'ls'</span><span class="p">,</span> <span class="s1">'-l'</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> |
---|
848 | <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span> <span class="n">error_msg</span><span class="o">=</span> |
---|
849 | <span class="s1">'FORTRAN EXECUTABLE COULD NOT BE FOUND!'</span><span class="p">)</span> |
---|
850 | |
---|
851 | <span class="k">return</span></div> |
---|
852 | |
---|
853 | |
---|
854 | <span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">"__main__"</span><span class="p">:</span> |
---|
855 | <span class="n">main</span><span class="p">()</span> |
---|
856 | </pre></div> |
---|
857 | |
---|
858 | </div> |
---|
859 | |
---|
860 | </div> |
---|
861 | <footer> |
---|
862 | |
---|
863 | |
---|
864 | <hr/> |
---|
865 | |
---|
866 | <div role="contentinfo"> |
---|
867 | <p> |
---|
868 | © Copyright 2018, Anne Philipp and Leopold Haimberger |
---|
869 | |
---|
870 | </p> |
---|
871 | </div> |
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872 | Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. |
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873 | |
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874 | </footer> |
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875 | |
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876 | </div> |
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877 | </div> |
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878 | |
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879 | </section> |
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880 | |
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881 | </div> |
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882 | |
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883 | |
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884 | |
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885 | |
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886 | |
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887 | |
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888 | |
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889 | <script type="text/javascript" id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script> |
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890 | <script type="text/javascript" src="../_static/jquery.js"></script> |
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891 | <script type="text/javascript" src="../_static/underscore.js"></script> |
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892 | <script type="text/javascript" src="../_static/doctools.js"></script> |
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893 | |
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894 | |
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895 | |
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896 | |
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897 | <script type="text/javascript" src="../_static/js/theme.js"></script> |
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898 | |
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899 | <script type="text/javascript"> |
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900 | jQuery(function () { |
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901 | SphinxRtdTheme.Navigation.enable(true); |
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902 | }); |
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903 | </script> |
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906 | </html> |
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