1 | #!/bin/bash |
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2 | |
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3 | # ON ECS or HPC servers: |
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4 | # start with ecaccess-job-submit -queueName <QUEUENAME> <NAME_OF_THIS_FILE> on gateway server |
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5 | # start with srun <NAME_OF_THIS_FILE> directly on machine |
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6 | |
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7 | #SBATCH --chdir=/scratch/$username |
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8 | #SBATCH --qos=el |
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9 | #SBATCH --job-name=flex_compile |
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10 | #SBATCH --output=flex_compile.%j.out |
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11 | #SBATCH --error=flex_compile.%j.out |
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12 | #SBATCH --mail-type=FAIL |
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13 | |
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14 | ## CRAY specific batch requests |
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15 | ##PBS -N flex_ecmwf |
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16 | ##PBS -q ns |
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17 | ##PBS -S /usr/bin/ksh |
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18 | ##PBS -o $$SCRATCH/flex_extract.$${Jobname}.$${Job_ID}.out |
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19 | # job output is in .ecaccess_DO_NOT_REMOVE |
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20 | ##PBS -j oe |
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21 | ##PBS -V |
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22 | ##PBS -l EC_threads_per_task=1 |
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23 | ##PBS -l EC_memory_per_task=3200MB |
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24 | |
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25 | set -x |
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26 | export VERSION=$version_number |
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27 | case $${EC_CLUSTER} in |
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28 | *ecs*) |
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29 | # module switch prgenv/gnu |
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30 | module load ecmwf-toolbox |
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31 | module load python3 |
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32 | module load ecaccess |
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33 | export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts |
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34 | export MAKEFILE=$makefile |
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35 | ;; |
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36 | *hpc*) |
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37 | # module switch PrgEnv-cray PrgEnv-intel |
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38 | module load python3 |
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39 | module load ecmwf-toolbox |
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40 | module load ecaccess |
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41 | echo $${GROUP} |
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42 | echo $${HOME} |
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43 | echo $${HOME} | awk -F / '{print $1, $2, $3, $4}' |
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44 | export GROUP=`echo $${HOME} | awk -F / '{print $4}'` |
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45 | export SCRATCH=$${SCRATCH} |
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46 | export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts |
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47 | export MAKEFILE=$makefile |
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48 | ;; |
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49 | esac |
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50 | |
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51 | mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} |
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52 | cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} # if FLEXPART_ROOT is not set this means cd to the home directory |
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53 | tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar |
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54 | cd Source/Fortran |
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55 | \rm *.o *.mod $fortran_program |
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56 | make -f $${MAKEFILE} >flexcompile 2>flexcompile |
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57 | |
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58 | ls -l $fortran_program >>flexcompile |
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59 | if [ $$? -eq 0 ]; then |
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60 | echo -e '\nSUCCESS!' >>flexcompile |
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61 | mail -s flexcompile.$${HOST}.$$$$ $${USER} <flexcompile |
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62 | sleep 1 |
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63 | else |
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64 | echo Environment: >>flexcompile |
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65 | env >> flexcompile |
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66 | mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER} <flexcompile |
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67 | sleep 1 |
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68 | fi |
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