[c31ee05] | 1 | #!/bin/bash |
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[373b74e] | 2 | |
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| 3 | # ON ECS or HPC servers: |
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| 4 | # start with ecaccess-job-submit -queueName <QUEUENAME> <NAME_OF_THIS_FILE> on gateway server |
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| 5 | # start with srun <NAME_OF_THIS_FILE> directly on machine |
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| 6 | |
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[c31ee05] | 7 | #SBATCH --chdir=/scratch/$username |
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[373b74e] | 8 | #SBATCH --qos=el |
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[c31ee05] | 9 | #SBATCH --job-name=flex_compile |
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| 10 | #SBATCH --output=flex_compile.%j.out |
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| 11 | #SBATCH --error=flex_compile.%j.out |
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[373b74e] | 12 | #SBATCH --mail-type=FAIL |
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| 13 | |
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| 14 | ## CRAY specific batch requests |
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| 15 | ##PBS -N flex_ecmwf |
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| 16 | ##PBS -q ns |
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| 17 | ##PBS -S /usr/bin/ksh |
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| 18 | ##PBS -o $$SCRATCH/flex_extract.$${Jobname}.$${Job_ID}.out |
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| 19 | # job output is in .ecaccess_DO_NOT_REMOVE |
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| 20 | ##PBS -j oe |
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| 21 | ##PBS -V |
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| 22 | ##PBS -l EC_threads_per_task=1 |
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| 23 | ##PBS -l EC_memory_per_task=3200MB |
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| 24 | |
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| 25 | set -x |
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| 26 | export VERSION=$version_number |
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| 27 | case $${EC_CLUSTER} in |
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| 28 | *ecs*) |
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| 29 | # module switch prgenv/gnu |
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| 30 | module load ecmwf-toolbox |
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| 31 | module load python3 |
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| 32 | module load ecaccess |
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| 33 | export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts |
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| 34 | export MAKEFILE=$makefile |
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| 35 | ;; |
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| 36 | *hpc*) |
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| 37 | # module switch PrgEnv-cray PrgEnv-intel |
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| 38 | module load python3 |
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| 39 | module load ecmwf-toolbox |
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| 40 | module load ecaccess |
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| 41 | echo $${GROUP} |
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| 42 | echo $${HOME} |
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| 43 | echo $${HOME} | awk -F / '{print $1, $2, $3, $4}' |
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| 44 | export GROUP=`echo $${HOME} | awk -F / '{print $4}'` |
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| 45 | export SCRATCH=$${SCRATCH} |
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| 46 | export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts |
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| 47 | export MAKEFILE=$makefile |
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| 48 | ;; |
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| 49 | esac |
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| 50 | |
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| 51 | mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} |
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| 52 | cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} # if FLEXPART_ROOT is not set this means cd to the home directory |
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| 53 | tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar |
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| 54 | cd Source/Fortran |
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| 55 | \rm *.o *.mod $fortran_program |
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| 56 | make -f $${MAKEFILE} >flexcompile 2>flexcompile |
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| 57 | |
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| 58 | ls -l $fortran_program >>flexcompile |
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| 59 | if [ $$? -eq 0 ]; then |
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[c31ee05] | 60 | echo -e '\nSUCCESS!' >>flexcompile |
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[373b74e] | 61 | mail -s flexcompile.$${HOST}.$$$$ $${USER} <flexcompile |
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[c31ee05] | 62 | sleep 1 |
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[373b74e] | 63 | else |
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| 64 | echo Environment: >>flexcompile |
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| 65 | env >> flexcompile |
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| 66 | mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER} <flexcompile |
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[c31ee05] | 67 | sleep 1 |
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[373b74e] | 68 | fi |
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