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92<li class="toctree-l1"><a class="reference internal" href="../../ecmwf_data.html">ECMWF Data</a></li>
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97<li class="toctree-l2 current"><a class="reference internal" href="../input.html">Control &amp; input data</a><ul class="current">
98<li class="toctree-l3"><a class="reference internal" href="setup.html">The installation script - <code class="docutils literal notranslate"><span class="pre">setup.sh</span></code></a></li>
99<li class="toctree-l3"><a class="reference internal" href="compilejob.html">The compilation job script <code class="docutils literal notranslate"><span class="pre">compilejob.ksh</span></code></a></li>
100<li class="toctree-l3"><a class="reference internal" href="fortran_makefile.html">The Fortran makefile for <code class="docutils literal notranslate"><span class="pre">calc_etadot</span></code></a></li>
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102<li class="toctree-l3"><a class="reference internal" href="jobscript.html">The job script <code class="docutils literal notranslate"><span class="pre">job.ksh</span></code></a></li>
103<li class="toctree-l3"><a class="reference internal" href="control.html">The CONTROL file</a></li>
104<li class="toctree-l3"><a class="reference internal" href="control_params.html">The CONTROL parameters</a></li>
105<li class="toctree-l3"><a class="reference internal" href="examples.html">CONTROL file examples</a></li>
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107<li class="toctree-l3"><a class="reference internal" href="ecmwf_env.html">ECMWF user credential file <code class="docutils literal notranslate"><span class="pre">ECMWF_ENV</span></code></a></li>
108<li class="toctree-l3 current"><a class="current reference internal" href="#">Templates</a><ul>
109<li class="toctree-l4"><a class="reference internal" href="#convert-nl">convert.nl</a></li>
110<li class="toctree-l4"><a class="reference internal" href="#ecmwf-env-template">ecmwf_env.template</a></li>
111<li class="toctree-l4"><a class="reference internal" href="#compilejob-template">compilejob.template</a></li>
112<li class="toctree-l4"><a class="reference internal" href="#job-temp">job.temp</a></li>
113<li class="toctree-l4"><a class="reference internal" href="#job-template">job.template</a></li>
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198  <div class="section" id="templates">
199<h1>Templates<a class="headerlink" href="#templates" title="Permalink to this headline"></a></h1>
200<p>In <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code>, the Python package <a class="reference external" href="https://genshi.edgewall.org/">genshi</a> is used to create specific files from templates. It is the most efficient way to be able to quickly adapt, e. g., the job scripts sent to the ECMWF batch queue system, or the namelist file für the Fortran program, without the need to change the program code.</p>
201<div class="admonition note">
202<p class="admonition-title">Note</p>
203<p>Do not change anything in these files unless you understand the effects!</p>
204</div>
205<p>Each template file has its content framework and keeps so-called placeholder variables in the positions where the values need to be substituted at run time. These placeholders are marked by a leading <code class="docutils literal notranslate"><span class="pre">$</span></code> sign. In case of the Kornshell job scripts, where (environment) variables are used, the <code class="docutils literal notranslate"><span class="pre">$</span></code> sign needs to be doubled for <cite>escaping</cite>.</p>
206<p>The following templates are used; they can be found in the directory <code class="docutils literal notranslate"><span class="pre">flex_extract_vX.X/Templates</span></code>:</p>
207<div class="section" id="convert-nl">
208<h2>convert.nl<a class="headerlink" href="#convert-nl" title="Permalink to this headline"></a></h2>
209<blockquote>
210<div><p>This is the template for a Fortran namelist file called <code class="docutils literal notranslate"><span class="pre">fort.4</span></code> read by <code class="docutils literal notranslate"><span class="pre">calc_etadot</span></code>.
211It contains all the parameters <code class="docutils literal notranslate"><span class="pre">calc_etadot</span></code> needs.</p>
212<div class="highlight-fortran notranslate"><div class="highlight"><pre><span></span>&amp;NAMGEN
213  maxl = $maxl,
214  maxb = $maxb,
215  mlevel = $mlevel,
216  mlevelist = &quot;$mlevelist&quot;,
217  mnauf = $mnauf,
218  metapar = $metapar,
219  rlo0 = $rlo0,
220  rlo1 = $rlo1,
221  rla0 = $rla0,
222  rla1 = $rla1,
223  momega = $momega,
224  momegadiff = $momegadiff,
225  mgauss = $mgauss,
226  msmooth = $msmooth,
227  meta = $meta,
228  metadiff = $metadiff,
229  mdpdeta = $mdpdeta
230/
231</pre></div>
232</div>
233</div></blockquote>
234</div>
235<div class="section" id="ecmwf-env-template">
236<h2>ecmwf_env.template<a class="headerlink" href="#ecmwf-env-template" title="Permalink to this headline"></a></h2>
237<blockquote>
238<div><p>This template is used to create the <code class="docutils literal notranslate"><span class="pre">ECMWF_ENV</span></code> file in the application modes <strong>gateway</strong> and <strong>remote</strong>. It contains the user credentials and gateway server settings for the file transfers.</p>
239<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>ECUID <span class="nv">$user_name</span>
240ECGID <span class="nv">$user_group</span>
241GATEWAY <span class="nv">$gateway_name</span>
242DESTINATION <span class="nv">$destination_name</span>
243</pre></div>
244</div>
245</div></blockquote>
246</div>
247<div class="section" id="compilejob-template">
248<h2>compilejob.template<a class="headerlink" href="#compilejob-template" title="Permalink to this headline"></a></h2>
249<blockquote>
250<div><p>This template is used to create the job script file called <code class="docutils literal notranslate"><span class="pre">compilejob.ksh</span></code> during the installation process for the application modes <strong>remote</strong> and <strong>gateway</strong>.</p>
251<p>At the beginning, some directives for the batch system are set.
252On the <strong>ecgate</strong> server, the <code class="docutils literal notranslate"><span class="pre">SBATCH</span></code> comments are the directives for the SLURM workload manager. A description of the single lines can be found at <a class="reference external" href="https://confluence.ecmwf.int/display/UDOC/Writing+SLURM+jobs">SLURM directives</a>.
253For the high-performance computers <strong>cca</strong> and <strong>ccb</strong>, the <code class="docutils literal notranslate"><span class="pre">PBS</span></code> comments are necessary;  for details see <a class="reference external" href="https://confluence.ecmwf.int/display/UDOC/Batch+environment%3A++PBS">PBS directives</a>.</p>
254<p>The software environment requirements mentioned in <a class="reference internal" href="../../installation.html#ref-requirements"><span class="std std-ref">Dependencies</span></a> are prepared by loading the corresponding modules depending on the <code class="docutils literal notranslate"><span class="pre">HOST</span></code>. It should not be changed without testing.</p>
255<p>Afterwards, the installation steps as such are done. They included the generation of the root directory, putting files in place, compiling the Fortran program, and sending a log file by email.</p>
256<div class="highlight-ksh notranslate"><div class="highlight"><pre><span></span><span class="ch">#!/bin/ksh</span>
257
258<span class="c1"># ON ECGB:</span>
259<span class="c1"># start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server</span>
260<span class="c1"># start with sbatch NAME_OF_THIS_FILE directly on machine</span>
261
262<span class="c1">#SBATCH --workdir=/scratch/ms/$usergroup/$username</span>
263<span class="c1">#SBATCH --qos=normal</span>
264<span class="c1">#SBATCH --job-name=flex_ecmwf</span>
265<span class="c1">#SBATCH --output=flex_ecmwf.%j.out</span>
266<span class="c1">#SBATCH --error=flex_ecmwf.%j.out</span>
267<span class="c1">#SBATCH --mail-type=FAIL</span>
268<span class="c1">#SBATCH --time=12:00:00</span>
269
270<span class="c1">## CRAY specific batch requests</span>
271<span class="c1">##PBS -N flex_ecmwf</span>
272<span class="c1">##PBS -q ns</span>
273<span class="c1">##PBS -S /usr/bin/ksh</span>
274<span class="c1">##PBS -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${Jobname}.$${Job_ID}.out</span>
275<span class="c1"># job output is in .ecaccess_DO_NOT_REMOVE</span>
276<span class="c1">##PBS -j oe</span>
277<span class="c1">##PBS -V</span>
278<span class="c1">##PBS -l EC_threads_per_task=1</span>
279<span class="c1">##PBS -l EC_memory_per_task=3200MB</span>
280
281<span class="nb">set</span> -x
282<span class="nb">export</span> <span class="nv">VERSION</span><span class="o">=</span><span class="nv">$version_number</span>
283<span class="k">case</span> <span class="nv">$$</span><span class="o">{</span>HOST<span class="o">}</span> in
284  *ecg*<span class="o">)</span>
285  module unload grib_api
286  module unload eccodes
287  module unload python
288  module unload emos
289  module load python3
290  module load eccodes/2.12.0
291  module load emos/455-r64
292  <span class="nb">export</span> <span class="nv">FLEXPART_ROOT_SCRIPTS</span><span class="o">=</span><span class="nv">$fp_root_scripts</span>
293  <span class="nb">export</span> <span class="nv">MAKEFILE</span><span class="o">=</span><span class="nv">$makefile</span>
294  <span class="p">;;</span>
295  *cca*<span class="o">)</span>
296  module unload python
297  module switch PrgEnv-cray PrgEnv-intel
298  module load python3
299  module load eccodes/2.12.0
300  module load emos
301  <span class="nb">echo</span> <span class="nv">$$</span><span class="o">{</span>GROUP<span class="o">}</span>
302  <span class="nb">echo</span> <span class="nv">$$</span><span class="o">{</span>HOME<span class="o">}</span>
303  <span class="nb">echo</span> <span class="nv">$$</span><span class="o">{</span>HOME<span class="o">}</span> <span class="p">|</span> awk -F / <span class="s1">&#39;{print $1, $2, $3, $4}&#39;</span>
304  <span class="nb">export</span> <span class="nv">GROUP</span><span class="o">=</span><span class="sb">`</span><span class="nb">echo</span> <span class="nv">$$</span><span class="o">{</span>HOME<span class="o">}</span> <span class="p">|</span> awk -F / <span class="s1">&#39;{print $4}&#39;</span><span class="sb">`</span>
305  <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span>/scratch/ms/<span class="nv">$$</span><span class="o">{</span>GROUP<span class="o">}</span>/<span class="nv">$$</span><span class="o">{</span>USER<span class="o">}</span>
306  <span class="nb">export</span> <span class="nv">FLEXPART_ROOT_SCRIPTS</span><span class="o">=</span><span class="nv">$fp_root_scripts</span>
307  <span class="nb">export</span> <span class="nv">MAKEFILE</span><span class="o">=</span><span class="nv">$makefile</span>
308  <span class="p">;;</span>
309<span class="k">esac</span>
310
311mkdir -p <span class="nv">$$</span><span class="o">{</span>FLEXPART_ROOT_SCRIPTS<span class="o">}</span>/flex_extract_v<span class="nv">$$</span><span class="o">{</span>VERSION<span class="o">}</span>
312<span class="nb">cd</span> <span class="nv">$$</span><span class="o">{</span>FLEXPART_ROOT_SCRIPTS<span class="o">}</span>/flex_extract_v<span class="nv">$$</span><span class="o">{</span>VERSION<span class="o">}</span>   <span class="c1"># if FLEXPART_ROOT is not set this means cd to the home directory</span>
313tar -xvf <span class="nv">$$</span><span class="o">{</span>HOME<span class="o">}</span>/flex_extract_v<span class="nv">$$</span><span class="o">{</span>VERSION<span class="o">}</span>.tar
314<span class="nb">cd</span> Source/Fortran
315<span class="se">\r</span>m *.o *.mod <span class="nv">$fortran_program</span>
316make -f <span class="nv">$$</span><span class="o">{</span>MAKEFILE<span class="o">}</span> &gt;flexcompile <span class="m">2</span>&gt;flexcompile
317
318ls -l <span class="nv">$fortran_program</span> &gt;&gt;flexcompile
319<span class="k">if</span> <span class="o">[</span> <span class="nv">$$</span>? -eq <span class="m">0</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
320  <span class="nb">echo</span> <span class="s1">&#39;SUCCESS!&#39;</span> &gt;&gt;flexcompile
321  mail -s flexcompile.<span class="nv">$$</span><span class="o">{</span>HOST<span class="o">}</span>.<span class="nv">$$$$</span> <span class="nv">$$</span><span class="o">{</span>USER<span class="o">}</span> &lt;flexcompile
322<span class="k">else</span>
323  <span class="nb">echo</span> Environment: &gt;&gt;flexcompile
324  env &gt;&gt; flexcompile
325  mail -s <span class="s2">&quot;ERROR! flexcompile.</span><span class="nv">$$</span><span class="s2">{HOST}.</span><span class="nv">$$$$</span><span class="s2">&quot;</span> <span class="nv">$$</span><span class="o">{</span>USER<span class="o">}</span> &lt;flexcompile
326<span class="k">fi</span>
327</pre></div>
328</div>
329</div></blockquote>
330</div>
331<div class="section" id="job-temp">
332<h2>job.temp<a class="headerlink" href="#job-temp" title="Permalink to this headline"></a></h2>
333<blockquote>
334<div><p>This template is used to create the actual job script file called <code class="docutils literal notranslate"><span class="pre">job.ksh</span></code> for the execution of <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code> in the application modes <strong>remote</strong> and <strong>gateway</strong>.</p>
335<p>At the beginning, some directives for the batch system are set.
336On the <strong>ecgate</strong> server, the <code class="docutils literal notranslate"><span class="pre">SBATCH</span></code> comments are the directives for the SLURM workload manager. A description of the single lines can be found at <a class="reference external" href="https://confluence.ecmwf.int/display/UDOC/Writing+SLURM+jobs">SLURM directives</a>.
337For the high performance computers <strong>cca</strong> and <strong>ccb</strong>, the <code class="docutils literal notranslate"><span class="pre">PBS</span></code> comments are necessary;
338for details see <a class="reference external" href="https://confluence.ecmwf.int/display/UDOC/Batch+environment%3A++PBS">PBS directives</a>.</p>
339<p>The software environment requirements mentioned in <a class="reference internal" href="../../installation.html#ref-requirements"><span class="std std-ref">Dependencies</span></a> are prepared by loading the corresponding modules depending on the <code class="docutils literal notranslate"><span class="pre">HOST</span></code>. It should not be changed without testing.</p>
340<p>Afterwards, the run directory and the <code class="docutils literal notranslate"><span class="pre">CONTROL</span></code> file are created and <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code> is executed. In the end, a log file is send by email.</p>
341<div class="highlight-ksh notranslate"><div class="highlight"><pre><span></span><span class="ch">#!/bin/ksh</span>
342
343<span class="c1"># ON ECGB:</span>
344<span class="c1"># start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server</span>
345<span class="c1"># start with sbatch NAME_OF_THIS_FILE directly on machine</span>
346
347<span class="c1">#SBATCH --workdir=/scratch/ms/at/km4a</span>
348<span class="c1">#SBATCH --qos=normal</span>
349<span class="c1">#SBATCH --job-name=flex_ecmwf</span>
350<span class="c1">#SBATCH --output=flex_ecmwf.%j.out</span>
351<span class="c1">#SBATCH --error=flex_ecmwf.%j.out</span>
352<span class="c1">#SBATCH --mail-type=FAIL</span>
353<span class="c1">#SBATCH --time=12:00:00</span>
354
355<span class="c1">## CRAY specific batch requests</span>
356<span class="c1">##PBS -N flex_ecmwf</span>
357<span class="c1">##PBS -q np</span>
358<span class="c1">##PBS -S /usr/bin/ksh</span>
359<span class="c1">## -o /scratch/ms/at/km4a/flex_ecmwf.$${PBS_JOBID}.out</span>
360<span class="c1">## job output is in .ecaccess_DO_NOT_REMOVE</span>
361<span class="c1">##PBS -j oe</span>
362<span class="c1">##PBS -V</span>
363<span class="c1">##PBS -l EC_threads_per_task=24</span>
364<span class="c1">##PBS -l EC_memory_per_task=32000MB</span>
365
366<span class="nb">set</span> -x
367<span class="nb">export</span> <span class="nv">VERSION</span><span class="o">=</span><span class="m">7</span>.1
368<span class="k">case</span> <span class="nv">$$</span><span class="o">{</span>HOST<span class="o">}</span> in
369  *ecg*<span class="o">)</span>
370  module unload grib_api
371  module unload eccodes
372  module unload python
373  module unload emos
374  module load python3
375  module load eccodes/2.12.0
376  module load emos/455-r64
377  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$$</span><span class="o">{</span>HOME<span class="o">}</span>/flex_extract_v7.1/Source/Python
378  <span class="p">;;</span>
379  *cca*<span class="o">)</span>
380  module unload python
381  module switch PrgEnv-cray PrgEnv-intel
382  module load python3
383  module load eccodes/2.12.0
384  module load emos
385  <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="nv">$$</span><span class="o">{</span>TMPDIR<span class="o">}</span>
386  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$$</span><span class="o">{</span>HOME<span class="o">}</span>/flex_extract_v7.1/Source/Python
387  <span class="p">;;</span>
388<span class="k">esac</span>
389
390<span class="nb">cd</span> <span class="nv">$$</span><span class="o">{</span>SCRATCH<span class="o">}</span>
391mkdir -p python<span class="nv">$$$$</span>
392<span class="nb">cd</span> python<span class="nv">$$$$</span>
393
394<span class="nb">export</span> <span class="nv">CONTROL</span><span class="o">=</span>CONTROL
395
396cat &gt;<span class="nv">$$</span><span class="o">{</span>CONTROL<span class="o">}</span><span class="s">&lt;&lt;EOF</span>
397<span class="s">$control_content</span>
398<span class="s">EOF</span>
399
400
401submit.py --controlfile<span class="o">=</span><span class="nv">$$</span><span class="o">{</span>CONTROL<span class="o">}</span> --inputdir<span class="o">=</span>./work --outputdir<span class="o">=</span>./work <span class="m">1</span>&gt; prot <span class="m">2</span>&gt;<span class="p">&amp;</span><span class="m">1</span>
402
403<span class="k">if</span> <span class="o">[</span> <span class="nv">$?</span> -eq <span class="m">0</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
404  <span class="nv">l</span><span class="o">=</span><span class="m">0</span>
405  <span class="k">for</span> muser in <span class="sb">`</span>grep -i MAILOPS <span class="nv">$$</span><span class="o">{</span>CONTROL<span class="o">}</span><span class="sb">`</span><span class="p">;</span> <span class="k">do</span>
406      <span class="k">if</span> <span class="o">[</span> <span class="nv">$$</span><span class="o">{</span>l<span class="o">}</span> -gt <span class="m">0</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
407         mail -s flex.<span class="nv">$$</span><span class="o">{</span>HOST<span class="o">}</span>.<span class="nv">$$$$</span> <span class="nv">$$</span><span class="o">{</span>muser<span class="o">}</span> &lt;prot
408      <span class="k">fi</span>
409      <span class="nv">l</span><span class="o">=</span><span class="k">$((</span><span class="nv">$$</span><span class="o">{</span>l<span class="o">}+</span><span class="m">1</span><span class="k">))</span>
410  <span class="k">done</span>
411<span class="k">else</span>
412  <span class="nv">l</span><span class="o">=</span><span class="m">0</span>
413  <span class="k">for</span> muser in <span class="sb">`</span>grep -i MAILFAIL <span class="nv">$$</span><span class="o">{</span>CONTROL<span class="o">}</span><span class="sb">`</span><span class="p">;</span> <span class="k">do</span>
414      <span class="k">if</span> <span class="o">[</span> <span class="nv">$$</span><span class="o">{</span>l<span class="o">}</span> -gt <span class="m">0</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
415         mail -s <span class="s2">&quot;ERROR! flex.</span><span class="nv">$$</span><span class="s2">{HOST}.</span><span class="nv">$$$$</span><span class="s2">&quot;</span> <span class="nv">$$</span><span class="o">{</span>muser<span class="o">}</span> &lt;prot
416      <span class="k">fi</span>
417      <span class="nv">l</span><span class="o">=</span><span class="k">$((</span><span class="nv">$$</span><span class="o">{</span>l<span class="o">}+</span><span class="m">1</span><span class="k">))</span>
418  <span class="k">done</span>
419<span class="k">fi</span>
420</pre></div>
421</div>
422</div></blockquote>
423</div>
424<div class="section" id="job-template">
425<h2>job.template<a class="headerlink" href="#job-template" title="Permalink to this headline"></a></h2>
426<blockquote>
427<div><p>This template is used to create the template for the execution job script <code class="docutils literal notranslate"><span class="pre">job.temp</span></code> for <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code> in the installation process. A description of the file can be found under <code class="docutils literal notranslate"><span class="pre">job.temp</span></code>. Several parameters are set in this process, such as the user credentials and the <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code> version number.</p>
428<div class="highlight-ksh notranslate"><div class="highlight"><pre><span></span><span class="ch">#!/bin/ksh</span>
429
430<span class="c1"># ON ECGB:</span>
431<span class="c1"># start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server</span>
432<span class="c1"># start with sbatch NAME_OF_THIS_FILE directly on machine</span>
433
434<span class="c1">#SBATCH --workdir=/scratch/ms/$usergroup/$username</span>
435<span class="c1">#SBATCH --qos=normal</span>
436<span class="c1">#SBATCH --job-name=flex_ecmwf</span>
437<span class="c1">#SBATCH --output=flex_ecmwf.%j.out</span>
438<span class="c1">#SBATCH --error=flex_ecmwf.%j.out</span>
439<span class="c1">#SBATCH --mail-type=FAIL</span>
440<span class="c1">#SBATCH --time=12:00:00</span>
441
442<span class="c1">## CRAY specific batch requests</span>
443<span class="c1">##PBS -N flex_ecmwf</span>
444<span class="c1">##PBS -q np</span>
445<span class="c1">##PBS -S /usr/bin/ksh</span>
446<span class="c1">## -o /scratch/ms/$usergroup/$username/flex_ecmwf.$$$${PBS_JOBID}.out</span>
447<span class="c1">## job output is in .ecaccess_DO_NOT_REMOVE</span>
448<span class="c1">##PBS -j oe</span>
449<span class="c1">##PBS -V</span>
450<span class="c1">##PBS -l EC_threads_per_task=24</span>
451<span class="c1">##PBS -l EC_memory_per_task=32000MB</span>
452
453<span class="nb">set</span> -x
454<span class="nb">export</span> <span class="nv">VERSION</span><span class="o">=</span><span class="nv">$version_number</span>
455<span class="k">case</span> <span class="nv">$$$$</span><span class="o">{</span>HOST<span class="o">}</span> in
456  *ecg*<span class="o">)</span>
457  module unload grib_api
458  module unload eccodes
459  module unload python
460  module unload emos
461  module load python3
462  module load eccodes/2.12.0
463  module load emos/455-r64
464  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$fp_root_path</span>
465  <span class="p">;;</span>
466  *cca*<span class="o">)</span>
467  module unload python
468  module switch PrgEnv-cray PrgEnv-intel
469  module load python3
470  module load eccodes/2.12.0
471  module load emos
472  <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>TMPDIR<span class="o">}</span>
473  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$fp_root_path</span>
474  <span class="p">;;</span>
475<span class="k">esac</span>
476
477<span class="nb">cd</span> <span class="nv">$$$$</span><span class="o">{</span>SCRATCH<span class="o">}</span>
478mkdir -p python<span class="nv">$$$$$$$$</span>
479<span class="nb">cd</span> python<span class="nv">$$$$$$$$</span>
480
481<span class="nb">export</span> <span class="nv">CONTROL</span><span class="o">=</span>CONTROL
482
483cat &gt;<span class="nv">$$$$</span><span class="o">{</span>CONTROL<span class="o">}</span><span class="s">&lt;&lt;EOF</span>
484<span class="s">$$control_content</span>
485<span class="s">EOF</span>
486
487
488submit.py --controlfile<span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>CONTROL<span class="o">}</span> --inputdir<span class="o">=</span>./work --outputdir<span class="o">=</span>./work <span class="m">1</span>&gt; prot <span class="m">2</span>&gt;<span class="p">&amp;</span><span class="m">1</span>
489
490<span class="k">if</span> <span class="o">[</span> <span class="nv">$?</span> -eq <span class="m">0</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
491  <span class="nv">l</span><span class="o">=</span><span class="m">0</span>
492  <span class="k">for</span> muser in <span class="sb">`</span>grep -i MAILOPS <span class="nv">$$$$</span><span class="o">{</span>CONTROL<span class="o">}</span><span class="sb">`</span><span class="p">;</span> <span class="k">do</span>
493      <span class="k">if</span> <span class="o">[</span> <span class="nv">$$$$</span><span class="o">{</span>l<span class="o">}</span> -gt <span class="m">0</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
494         mail -s flex.<span class="nv">$$$$</span><span class="o">{</span>HOST<span class="o">}</span>.<span class="nv">$$$$$$$$</span> <span class="nv">$$$$</span><span class="o">{</span>muser<span class="o">}</span> &lt;prot
495      <span class="k">fi</span>
496      <span class="nv">l</span><span class="o">=</span><span class="k">$((</span><span class="nv">$$$$</span><span class="o">{</span>l<span class="o">}+</span><span class="m">1</span><span class="k">))</span>
497  <span class="k">done</span>
498<span class="k">else</span>
499  <span class="nv">l</span><span class="o">=</span><span class="m">0</span>
500  <span class="k">for</span> muser in <span class="sb">`</span>grep -i MAILFAIL <span class="nv">$$$$</span><span class="o">{</span>CONTROL<span class="o">}</span><span class="sb">`</span><span class="p">;</span> <span class="k">do</span>
501      <span class="k">if</span> <span class="o">[</span> <span class="nv">$$$$</span><span class="o">{</span>l<span class="o">}</span> -gt <span class="m">0</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
502         mail -s <span class="s2">&quot;ERROR! flex.</span><span class="nv">$$$$</span><span class="s2">{HOST}.</span><span class="nv">$$$$$$$$</span><span class="s2">&quot;</span> <span class="nv">$$$$</span><span class="o">{</span>muser<span class="o">}</span> &lt;prot
503      <span class="k">fi</span>
504      <span class="nv">l</span><span class="o">=</span><span class="k">$((</span><span class="nv">$$$$</span><span class="o">{</span>l<span class="o">}+</span><span class="m">1</span><span class="k">))</span>
505  <span class="k">done</span>
506<span class="k">fi</span>
507</pre></div>
508</div>
509</div></blockquote>
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