source:
flex_extract.git/templates/job.template
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26f3bce
Last change on this file since 26f3bce was 26f3bce, checked in by Anne Philipp <anne.philipp@…>, 5 years ago | |
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File size: 1.8 KB |
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[d69b677] | 1 | #!/bin/ksh |
2 | ||
3 | # ON ECGB: | |
4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server | |
5 | # start with sbatch NAME_OF_THIS_FILE directly on machine | |
6 | ||
[c5074d2] | 7 | #SBATCH --workdir=/scratch/ms/$usergroup/$username |
[d69b677] | 8 | #SBATCH --qos=normal |
9 | #SBATCH --job-name=flex_ecmwf | |
10 | #SBATCH --output=flex_ecmwf.%j.out | |
11 | #SBATCH --error=flex_ecmwf.%j.out | |
12 | #SBATCH --mail-type=FAIL | |
13 | #SBATCH --time=12:00:00 | |
14 | ||
15 | ## CRAY specific batch requests | |
16 | ##PBS -N flex_ecmwf | |
17 | ##PBS -q np | |
18 | ##PBS -S /usr/bin/ksh | |
[b02a07e] | 19 | ## -o /scratch/ms/$usergroup/$username/flex_ecmwf.$$$${PBS_JOBID}.out |
[d69b677] | 20 | ## job output is in .ecaccess_DO_NOT_REMOVE |
21 | ##PBS -j oe | |
22 | ##PBS -V | |
23 | ##PBS -l EC_threads_per_task=24 | |
24 | ##PBS -l EC_memory_per_task=32000MB | |
25 | ||
26 | set -x | |
[c5074d2] | 27 | export VERSION=$version_number |
[b02a07e] | 28 | case $$$${HOST} in |
[d69b677] | 29 | *ecg*) |
30 | module unload grib_api | |
[c97d8ec] | 31 | module unload eccodes |
[79729d5] | 32 | module unload python |
[d69b677] | 33 | module unload emos |
[26f3bce] | 34 | module load python |
[79729d5] | 35 | module load eccodes/2.12.0 |
[b02a07e] | 36 | module load emos/455-r64 |
37 | export PATH=$$$${PATH}:$fp_root_path | |
[d69b677] | 38 | ;; |
39 | *cca*) | |
[79729d5] | 40 | module unload python |
[d69b677] | 41 | module switch PrgEnv-cray PrgEnv-intel |
[79729d5] | 42 | module load python3 |
43 | module load eccodes/2.12.0 | |
[d69b677] | 44 | module load emos |
[b02a07e] | 45 | export SCRATCH=$$$${TMPDIR} |
46 | export PATH=$$$${PATH}:$fp_root_path | |
[d69b677] | 47 | ;; |
48 | esac | |
49 | ||
[b02a07e] | 50 | cd $$$${SCRATCH} |
51 | mkdir -p python$$$$$$$$ | |
52 | cd python$$$$$$$$ | |
[d69b677] | 53 | |
[25b14be] | 54 | export CONTROL=CONTROL |
[d69b677] | 55 | |
[b02a07e] | 56 | cat >$$$${CONTROL}<<EOF |
57 | $$control_content | |
[d69b677] | 58 | EOF |
59 | ||
60 | ||
[b02a07e] | 61 | submit.py --controlfile=$$$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1 |
[d69b677] | 62 | |
63 | if [ $? -eq 0 ] ; then | |
64 | l=0 | |
[b02a07e] | 65 | for muser in `grep -i MAILOPS $$$${CONTROL}`; do |
66 | if [ $$$${l} -gt 0 ] ; then | |
67 | mail -s flex.$$$${HOST}.$$$$$$$$ $$$${muser} <prot | |
[d69b677] | 68 | fi |
[b02a07e] | 69 | l=$(($$$${l}+1)) |
[d69b677] | 70 | done |
71 | else | |
72 | l=0 | |
[b02a07e] | 73 | for muser in `grep -i MAILFAIL $$$${CONTROL}`; do |
74 | if [ $$$${l} -gt 0 ] ; then | |
75 | mail -s "ERROR! flex.$$$${HOST}.$$$$$$$$" $$$${muser} <prot | |
[d69b677] | 76 | fi |
[b02a07e] | 77 | l=$(($$$${l}+1)) |
[d69b677] | 78 | done |
79 | fi | |
80 |
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