source:
flex_extract.git/templates/job.template
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268ee86
Last change on this file since 268ee86 was e585e1b, checked in by Anne Philipp <anne.philipp@…>, 6 years ago | |
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File size: 1.7 KB |
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[d69b677] | 1 | #!/bin/ksh |
2 | ||
3 | # ON ECGB: | |
4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server | |
5 | # start with sbatch NAME_OF_THIS_FILE directly on machine | |
6 | ||
[c5074d2] | 7 | #SBATCH --workdir=/scratch/ms/$usergroup/$username |
[d69b677] | 8 | #SBATCH --qos=normal |
9 | #SBATCH --job-name=flex_ecmwf | |
10 | #SBATCH --output=flex_ecmwf.%j.out | |
11 | #SBATCH --error=flex_ecmwf.%j.out | |
12 | #SBATCH --mail-type=FAIL | |
13 | #SBATCH --time=12:00:00 | |
14 | ||
15 | ## CRAY specific batch requests | |
16 | ##PBS -N flex_ecmwf | |
17 | ##PBS -q np | |
18 | ##PBS -S /usr/bin/ksh | |
[c5074d2] | 19 | ## -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${PBS_JOBID}.out |
[d69b677] | 20 | ## job output is in .ecaccess_DO_NOT_REMOVE |
21 | ##PBS -j oe | |
22 | ##PBS -V | |
23 | ##PBS -l EC_threads_per_task=24 | |
24 | ##PBS -l EC_memory_per_task=32000MB | |
25 | ||
26 | set -x | |
[c5074d2] | 27 | export VERSION=$version_number |
28 | case $${HOST} in | |
[d69b677] | 29 | *ecg*) |
30 | module load python | |
31 | module unload grib_api | |
[c97d8ec] | 32 | module unload eccodes |
[d69b677] | 33 | module unload emos |
[e585e1b] | 34 | module load grib_api/1.26.1 |
[c97d8ec] | 35 | module load emos/457-r64 |
[c5074d2] | 36 | export PATH=$${PATH}:$fp_root_path |
[d69b677] | 37 | ;; |
38 | *cca*) | |
39 | module switch PrgEnv-cray PrgEnv-intel | |
40 | module load grib_api | |
41 | module load emos | |
42 | module load python | |
[c5074d2] | 43 | export SCRATCH=$${TMPDIR} |
44 | export PATH=$${PATH}:$fp_root_path | |
[d69b677] | 45 | ;; |
46 | esac | |
47 | ||
[c5074d2] | 48 | cd $${SCRATCH} |
49 | mkdir -p python$$$$ | |
50 | cd python$$$$ | |
[d69b677] | 51 | |
[25b14be] | 52 | export CONTROL=CONTROL |
[d69b677] | 53 | |
[c5074d2] | 54 | cat >$${CONTROL}<<EOF |
[d69b677] | 55 | EOF |
56 | ||
57 | ||
[c5074d2] | 58 | submit.py --controlfile=$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1 |
[d69b677] | 59 | |
60 | if [ $? -eq 0 ] ; then | |
61 | l=0 | |
[c5074d2] | 62 | for muser in `grep -i MAILOPS $${CONTROL}`; do |
63 | if [ $${l} -gt 0 ] ; then | |
64 | mail -s flex.$${HOST}.$$$$ $${muser} <prot | |
[d69b677] | 65 | fi |
[c5074d2] | 66 | l=$(($${l}+1)) |
[d69b677] | 67 | done |
68 | else | |
69 | l=0 | |
[c5074d2] | 70 | for muser in `grep -i MAILFAIL $${CONTROL}`; do |
71 | if [ $${l} -gt 0 ] ; then | |
72 | mail -s "ERROR! flex.$${HOST}.$$$$" $${muser} <prot | |
[d69b677] | 73 | fi |
[c5074d2] | 74 | l=$(($${l}+1)) |
[d69b677] | 75 | done |
76 | fi | |
77 |
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