source:
flex_extract.git/source/pythontest/TestData/job.temp.test
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aa275fc
Last change on this file since aa275fc was c5074d2, checked in by Anne Philipp <anne.philipp@…>, 6 years ago | |
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[d69b677] | 1 | #!/bin/ksh |
2 | ||
3 | # ON ECGB: | |
4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server | |
5 | # start with sbatch NAME_OF_THIS_FILE directly on machine | |
6 | ||
[c5074d2] | 7 | #SBATCH --workdir=/scratch/ms/testgroup/testuser |
[d69b677] | 8 | #SBATCH --qos=normal |
9 | #SBATCH --job-name=flex_ecmwf | |
10 | #SBATCH --output=flex_ecmwf.%j.out | |
11 | #SBATCH --error=flex_ecmwf.%j.out | |
12 | #SBATCH --mail-type=FAIL | |
13 | #SBATCH --time=12:00:00 | |
14 | ||
15 | ## CRAY specific batch requests | |
16 | ##PBS -N flex_ecmwf | |
17 | ##PBS -q np | |
18 | ##PBS -S /usr/bin/ksh | |
[c5074d2] | 19 | ## -o /scratch/ms/testgroup/testuser/flex_ecmwf.${PBS_JOBID}.out |
[d69b677] | 20 | ## job output is in .ecaccess_DO_NOT_REMOVE |
21 | ##PBS -j oe | |
22 | ##PBS -V | |
23 | ##PBS -l EC_threads_per_task=24 | |
24 | ##PBS -l EC_memory_per_task=32000MB | |
25 | ||
26 | set -x | |
[efdb01a] | 27 | export VERSION=7.1 |
[c5074d2] | 28 | case ${HOST} in |
[d69b677] | 29 | *ecg*) |
30 | module load python | |
31 | module unload grib_api | |
32 | module unload emos | |
33 | module load grib_api/1.14.5 | |
34 | module load emos/437-r64 | |
[c5074d2] | 35 | export PATH=${PATH}:fp_root_test_path/flex_extract_v7.1/source/python |
[d69b677] | 36 | ;; |
37 | *cca*) | |
38 | module switch PrgEnv-cray PrgEnv-intel | |
39 | module load grib_api | |
40 | module load emos | |
41 | module load python | |
[c5074d2] | 42 | export SCRATCH=${TMPDIR} |
43 | export PATH=${PATH}:fp_root_test_path/flex_extract_v7.1/source/python | |
[d69b677] | 44 | ;; |
45 | esac | |
46 | ||
[c5074d2] | 47 | cd ${SCRATCH} |
[d69b677] | 48 | mkdir -p python$$ |
49 | cd python$$ | |
50 | ||
[25b14be] | 51 | export CONTROL=CONTROL |
[d69b677] | 52 | |
[c5074d2] | 53 | cat >${CONTROL}<<EOF |
[d69b677] | 54 | EOF |
55 | ||
56 | ||
[c5074d2] | 57 | submit.py --controlfile=${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1 |
[d69b677] | 58 | |
59 | if [ $? -eq 0 ] ; then | |
60 | l=0 | |
[c5074d2] | 61 | for muser in `grep -i MAILOPS ${CONTROL}`; do |
62 | if [ ${l} -gt 0 ] ; then | |
63 | mail -s flex.${HOST}.$$ ${muser} <prot | |
[d69b677] | 64 | fi |
[c5074d2] | 65 | l=$((${l}+1)) |
[d69b677] | 66 | done |
67 | else | |
68 | l=0 | |
[c5074d2] | 69 | for muser in `grep -i MAILFAIL ${CONTROL}`; do |
70 | if [ ${l} -gt 0 ] ; then | |
71 | mail -s "ERROR! flex.${HOST}.$$" ${muser} <prot | |
[d69b677] | 72 | fi |
[c5074d2] | 73 | l=$((${l}+1)) |
[d69b677] | 74 | done |
75 | fi | |
76 |
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