[d69b677] | 1 | #!/usr/bin/env python |
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[efdb01a] | 2 | # -*- coding: utf-8 -*- |
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[991df6a] | 3 | #******************************************************************************* |
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| 4 | # @Author: Anne Fouilloux (University of Oslo) |
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| 5 | # |
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| 6 | # @Date: October 2014 |
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| 7 | # |
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| 8 | # @Change History: |
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| 9 | # |
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| 10 | # November 2015 - Leopold Haimberger (University of Vienna): |
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[ff99eae] | 11 | # - moved the getEIdata program into a function "get_mars_data" |
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[991df6a] | 12 | # - moved the AgurmentParser into a seperate function |
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| 13 | # - adatpted the function for the use in flex_extract |
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[ff99eae] | 14 | # - renamed file to get_mars_data |
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[991df6a] | 15 | # |
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| 16 | # February 2018 - Anne Philipp (University of Vienna): |
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| 17 | # - applied PEP8 style guide |
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| 18 | # - added structured documentation |
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| 19 | # - minor changes in programming style for consistence |
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| 20 | # - added function main and moved function calls vom __main__ there |
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| 21 | # (necessary for better documentation with docstrings for later |
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| 22 | # online documentation) |
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| 23 | # - use of UIFiles class for file selection and deletion |
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[6f951ca] | 24 | # - seperated get_mars_data function into several smaller pieces: |
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| 25 | # write_reqheader, mk_server, mk_dates, remove_old, do_retrievment |
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[991df6a] | 26 | # |
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| 27 | # @License: |
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[6f951ca] | 28 | # (C) Copyright 2014-2019. |
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| 29 | # Anne Philipp, Leopold Haimberger |
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[991df6a] | 30 | # |
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[6f951ca] | 31 | # This work is licensed under the Creative Commons Attribution 4.0 |
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| 32 | # International License. To view a copy of this license, visit |
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| 33 | # http://creativecommons.org/licenses/by/4.0/ or send a letter to |
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| 34 | # Creative Commons, PO Box 1866, Mountain View, CA 94042, USA. |
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[991df6a] | 35 | #******************************************************************************* |
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[6f951ca] | 36 | '''This script extracts MARS data from ECMWF servers. |
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[96e1533] | 37 | |
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[6f951ca] | 38 | At first, the necessary parameters from command line and CONTROL files are |
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| 39 | extracted. They define the data set to be extracted from MARS. |
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[96e1533] | 40 | |
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| 41 | This file can also be imported as a module and contains the following |
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| 42 | functions: |
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| 43 | |
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| 44 | * main - the main function of the script |
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[6f951ca] | 45 | * get_mars_data - overall control of ECMWF data retrievment |
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| 46 | * write_reqheader - writes the header into the mars_request file |
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| 47 | * mk_server - creates the server connection to ECMWF servers |
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| 48 | * mk_dates - defines the start and end date |
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| 49 | * remove_old - deletes old retrieved grib files |
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| 50 | * do_retrievement - creates individual retrievals |
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| 51 | |
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| 52 | Type: get_mars_data.py --help |
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| 53 | to get information about command line parameters. |
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| 54 | Read the documentation for usage instructions. |
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| 55 | ''' |
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[efdb01a] | 56 | # ------------------------------------------------------------------------------ |
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| 57 | # MODULES |
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| 58 | # ------------------------------------------------------------------------------ |
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[991df6a] | 59 | import os |
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| 60 | import sys |
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| 61 | import inspect |
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[ca867de] | 62 | from datetime import datetime, timedelta |
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[ff99eae] | 63 | |
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| 64 | # software specific classes and modules from flex_extract |
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[6f951ca] | 65 | # add path to local main python path for flex_extract to get full access |
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[70fee58] | 66 | sys.path.append(os.path.dirname(os.path.abspath( |
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| 67 | inspect.getfile(inspect.currentframe()))) + '/../') |
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[2fb99de] | 68 | import _config |
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[9aefaad] | 69 | from tools import (my_error, normal_exit, get_cmdline_args, |
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[5bad6ec] | 70 | read_ecenv, make_dir) |
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[25b14be] | 71 | from classes.EcFlexpart import EcFlexpart |
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| 72 | from classes.UioFiles import UioFiles |
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[403cbf1] | 73 | from classes.MarsRetrieval import MarsRetrieval |
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[ca867de] | 74 | |
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| 75 | try: |
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| 76 | ecapi = True |
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| 77 | import ecmwfapi |
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| 78 | except ImportError: |
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| 79 | ecapi = False |
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[efdb01a] | 80 | # ------------------------------------------------------------------------------ |
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| 81 | # FUNCTION |
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| 82 | # ------------------------------------------------------------------------------ |
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[991df6a] | 83 | def main(): |
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[274f9ef] | 84 | '''Controls the program to get data out of mars. |
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| 85 | |
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| 86 | This is done if it is called directly from command line. |
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| 87 | Then it also takes program call arguments and control file input. |
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[295ff45] | 88 | |
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[274f9ef] | 89 | Parameters |
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| 90 | ---------- |
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[991df6a] | 91 | |
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[274f9ef] | 92 | Return |
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| 93 | ------ |
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[991df6a] | 94 | |
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| 95 | ''' |
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[54a8a01] | 96 | |
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[9aefaad] | 97 | args = get_cmdline_args() |
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[4971f63] | 98 | c = ControlFile(args.controlfile) |
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[54a8a01] | 99 | |
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[2fb99de] | 100 | env_parameter = read_ecenv(_config.PATH_ECMWF_ENV) |
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[295ff45] | 101 | c.assign_args_to_control(args) |
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[54a8a01] | 102 | c.assign_envs_to_control(env_parameter) |
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[2fb99de] | 103 | c.check_conditions(args.queue) |
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[54a8a01] | 104 | |
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[ff99eae] | 105 | get_mars_data(c) |
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[96e1533] | 106 | normal_exit(c.mailops, c.queue, 'Done!') |
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[d69b677] | 107 | |
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[991df6a] | 108 | return |
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| 109 | |
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[ff99eae] | 110 | def get_mars_data(c): |
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[274f9ef] | 111 | '''Retrieves the EC data needed for a FLEXPART simulation. |
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| 112 | |
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| 113 | Start and end dates for retrieval period is set. Retrievals |
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| 114 | are divided into smaller periods if necessary and datechunk parameter |
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| 115 | is set. |
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| 116 | |
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| 117 | Parameters |
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| 118 | ---------- |
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[6f951ca] | 119 | c : ControlFile |
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[274f9ef] | 120 | Contains all the parameters of CONTROL file and |
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| 121 | command line. |
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| 122 | |
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| 123 | Return |
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| 124 | ------ |
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| 125 | |
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[991df6a] | 126 | ''' |
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[631ba13] | 127 | c.ecapi = ecapi |
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[d69b677] | 128 | |
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| 129 | if not os.path.exists(c.inputdir): |
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[5bad6ec] | 130 | make_dir(c.inputdir) |
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[991df6a] | 131 | |
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[403cbf1] | 132 | if c.request == 0: |
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[2fb99de] | 133 | print("Retrieving EC data!") |
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[403cbf1] | 134 | else: |
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| 135 | if c.request == 1: |
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| 136 | print("Printing mars requests!") |
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| 137 | elif c.request == 2: |
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| 138 | print("Retrieving EC data and printing mars request!") |
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[631ba13] | 139 | write_reqheader(os.path.join(c.inputdir, _config.FILE_MARS_REQUESTS)) |
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[2fb99de] | 140 | |
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| 141 | print("start date %s " % (c.start_date)) |
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| 142 | print("end date %s " % (c.end_date)) |
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[d69b677] | 143 | |
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[631ba13] | 144 | server = mk_server(c) |
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| 145 | |
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| 146 | # if data are to be retrieved, clean up any old grib files |
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| 147 | if c.request == 0 or c.request == 2: |
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[1d15e27] | 148 | remove_old('*grb', c.inputdir) |
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[631ba13] | 149 | |
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| 150 | # -------------- flux data ------------------------------------------------ |
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[45c6337] | 151 | start, end, datechunk = mk_dates(c, fluxes=True) |
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[631ba13] | 152 | do_retrievement(c, server, start, end, datechunk, fluxes=True) |
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| 153 | |
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| 154 | # -------------- non flux data -------------------------------------------- |
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[45c6337] | 155 | start, end, datechunk = mk_dates(c, fluxes=False) |
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[631ba13] | 156 | do_retrievement(c, server, start, end, datechunk, fluxes=False) |
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| 157 | |
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| 158 | return |
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| 159 | |
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| 160 | def write_reqheader(marsfile): |
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| 161 | '''Writes header with column names into mars request file. |
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| 162 | |
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| 163 | Parameters |
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| 164 | ---------- |
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[6f951ca] | 165 | marsfile : str |
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[631ba13] | 166 | Path to the mars request file. |
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| 167 | |
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| 168 | Return |
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| 169 | ------ |
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| 170 | |
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| 171 | ''' |
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| 172 | MR = MarsRetrieval(None, None) |
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| 173 | attrs = vars(MR).copy() |
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| 174 | del attrs['server'] |
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| 175 | del attrs['public'] |
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| 176 | with open(marsfile, 'w') as f: |
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| 177 | f.write('request_number' + ', ') |
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| 178 | f.write(', '.join(str(key) for key in sorted(attrs.iterkeys()))) |
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| 179 | f.write('\n') |
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| 180 | |
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| 181 | return |
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| 182 | |
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| 183 | def mk_server(c): |
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| 184 | '''Creates server connection if ECMWF WebAPI is available. |
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| 185 | |
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| 186 | Parameters |
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| 187 | ---------- |
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[6f951ca] | 188 | c : ControlFile |
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[631ba13] | 189 | Contains all the parameters of CONTROL file and |
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| 190 | command line. |
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| 191 | |
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| 192 | Return |
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| 193 | ------ |
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[6f951ca] | 194 | server : ECMWFDataServer or ECMWFService |
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[631ba13] | 195 | Connection to ECMWF server via python interface ECMWF WebAPI. |
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| 196 | |
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| 197 | ''' |
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| 198 | if c.ecapi: |
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[5bad6ec] | 199 | if c.public: |
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| 200 | server = ecmwfapi.ECMWFDataServer() |
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| 201 | else: |
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| 202 | server = ecmwfapi.ECMWFService("mars") |
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[d69b677] | 203 | else: |
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| 204 | server = False |
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| 205 | |
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[2fb99de] | 206 | print('Using ECMWF WebAPI: ' + str(c.ecapi)) |
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[991df6a] | 207 | |
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[631ba13] | 208 | return server |
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[54a8a01] | 209 | |
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| 210 | |
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[631ba13] | 211 | def mk_dates(c, fluxes): |
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| 212 | '''Prepares start and end date depending on flux or non flux data. |
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[54a8a01] | 213 | |
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[631ba13] | 214 | If forecast for maximum one day (upto 24h) are to be retrieved, then |
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| 215 | collect accumulation data (flux data) with additional days in the |
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| 216 | beginning and at the end (used for complete disaggregation of |
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| 217 | original period) |
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[54a8a01] | 218 | |
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[631ba13] | 219 | If forecast data longer than 24h are to be retrieved, then |
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| 220 | collect accumulation data (flux data) with the exact start and end date |
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| 221 | (disaggregation will be done for the exact time period with |
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| 222 | boundary conditions) |
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| 223 | |
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| 224 | Since for basetime the extraction contains the 12 hours upfront, |
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| 225 | if basetime is 0, the starting date has to be the day before and |
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| 226 | |
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| 227 | Parameters |
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| 228 | ---------- |
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[6f951ca] | 229 | c : ControlFile |
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[631ba13] | 230 | Contains all the parameters of CONTROL file and |
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| 231 | command line. |
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| 232 | |
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[6f951ca] | 233 | fluxes : boolean, optional |
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[631ba13] | 234 | Decides if the flux parameter settings are stored or |
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| 235 | the rest of the parameter list. |
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| 236 | Default value is False. |
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| 237 | |
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| 238 | Return |
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| 239 | ------ |
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[6f951ca] | 240 | start : datetime |
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[631ba13] | 241 | The start date of the retrieving data set. |
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| 242 | |
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[6f951ca] | 243 | end : datetime |
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[631ba13] | 244 | The end date of the retrieving data set. |
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| 245 | |
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[6f951ca] | 246 | chunk : datetime |
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[631ba13] | 247 | Time period in days for one single mars retrieval. |
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| 248 | |
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| 249 | ''' |
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[ca867de] | 250 | start = datetime.strptime(c.start_date, '%Y%m%d') |
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| 251 | end = datetime.strptime(c.end_date, '%Y%m%d') |
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[631ba13] | 252 | chunk = timedelta(days=int(c.date_chunk)) |
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| 253 | |
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| 254 | if c.basetime: |
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| 255 | if c.basetime == '00': |
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| 256 | start = start - timedelta(days=1) |
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[efdb01a] | 257 | |
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[dbf9d89] | 258 | if not c.purefc and fluxes: |
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[ca867de] | 259 | start = start - timedelta(days=1) |
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[631ba13] | 260 | end = end + timedelta(days=1) |
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[ca867de] | 261 | |
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[631ba13] | 262 | return start, end, chunk |
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[54a8a01] | 263 | |
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[1d15e27] | 264 | def remove_old(pattern, inputdir): |
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[3f36e42] | 265 | '''Deletes old retrieval files from current input directory |
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| 266 | matching the pattern. |
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[54a8a01] | 267 | |
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[631ba13] | 268 | Parameters |
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| 269 | ---------- |
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[6f951ca] | 270 | pattern : str |
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[631ba13] | 271 | The sub string pattern which identifies the files to be deleted. |
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[991df6a] | 272 | |
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[6f951ca] | 273 | inputdir : str, optional |
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[1d15e27] | 274 | Path to the directory where the retrieved data is stored. |
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| 275 | |
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[631ba13] | 276 | Return |
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| 277 | ------ |
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[991df6a] | 278 | |
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[631ba13] | 279 | ''' |
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[1d15e27] | 280 | print('... removing old content of ' + inputdir) |
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[631ba13] | 281 | |
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[1d15e27] | 282 | tobecleaned = UioFiles(inputdir, pattern) |
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[631ba13] | 283 | tobecleaned.delete_files() |
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[54a8a01] | 284 | |
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| 285 | return |
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| 286 | |
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[631ba13] | 287 | |
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[54a8a01] | 288 | def do_retrievement(c, server, start, end, delta_t, fluxes=False): |
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[274f9ef] | 289 | '''Divides the complete retrieval period in smaller chunks and |
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| 290 | retrieves the data from MARS. |
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| 291 | |
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| 292 | Parameters |
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| 293 | ---------- |
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[6f951ca] | 294 | c : ControlFile |
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[274f9ef] | 295 | Contains all the parameters of CONTROL file and |
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| 296 | command line. |
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[54a8a01] | 297 | |
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[6f951ca] | 298 | server : ECMWFService or ECMWFDataServer |
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[274f9ef] | 299 | The server connection to ECMWF. |
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[54a8a01] | 300 | |
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[6f951ca] | 301 | start : datetime |
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[274f9ef] | 302 | The start date of the retrieval. |
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[54a8a01] | 303 | |
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[6f951ca] | 304 | end : datetime |
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[274f9ef] | 305 | The end date of the retrieval. |
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[54a8a01] | 306 | |
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[6f951ca] | 307 | delta_t : datetime |
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[274f9ef] | 308 | Delta_t + 1 is the maximal time period of a single |
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| 309 | retrieval. |
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[54a8a01] | 310 | |
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[6f951ca] | 311 | fluxes : boolean, optional |
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[274f9ef] | 312 | Decides if the flux parameters are to be retrieved or |
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| 313 | the rest of the parameter list. |
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| 314 | Default value is False. |
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[54a8a01] | 315 | |
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[274f9ef] | 316 | Return |
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| 317 | ------ |
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[54a8a01] | 318 | |
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| 319 | ''' |
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| 320 | |
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| 321 | # since actual day also counts as one day, |
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| 322 | # we only need to add datechunk - 1 days to retrieval |
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| 323 | # for a period |
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[ca867de] | 324 | delta_t_m1 = delta_t - timedelta(days=1) |
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[54a8a01] | 325 | |
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[efdb01a] | 326 | day = start |
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| 327 | while day <= end: |
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[54a8a01] | 328 | flexpart = EcFlexpart(c, fluxes) |
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| 329 | tmpday = day + delta_t_m1 |
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[ff99eae] | 330 | if tmpday < end: |
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| 331 | dates = day.strftime("%Y%m%d") + "/to/" + \ |
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| 332 | tmpday.strftime("%Y%m%d") |
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| 333 | else: |
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| 334 | dates = day.strftime("%Y%m%d") + "/to/" + \ |
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| 335 | end.strftime("%Y%m%d") |
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[efdb01a] | 336 | |
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[2fb99de] | 337 | print("... retrieve " + dates + " in dir " + c.inputdir) |
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[64cf353] | 338 | |
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[ff99eae] | 339 | try: |
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[5bad6ec] | 340 | flexpart.retrieve(server, dates, c.public, c.request, c.inputdir) |
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[ff99eae] | 341 | except IOError: |
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[54a8a01] | 342 | my_error(c.mailfail, 'MARS request failed') |
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[efdb01a] | 343 | |
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[54a8a01] | 344 | day += delta_t |
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[64cf353] | 345 | |
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[efdb01a] | 346 | return |
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[d69b677] | 347 | |
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| 348 | if __name__ == "__main__": |
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[991df6a] | 349 | main() |
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