1 | #!/usr/bin/env python |
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2 | # -*- coding: utf-8 -*- |
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3 | #******************************************************************************* |
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4 | # @Author: Anne Fouilloux (University of Oslo) |
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5 | # |
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6 | # @Date: October 2014 |
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7 | # |
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8 | # @Change History: |
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9 | # |
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10 | # November 2015 - Leopold Haimberger (University of Vienna): |
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11 | # - modified method list_files to work with glob instead of listdir |
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12 | # - added pattern search in method list_files |
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13 | # |
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14 | # February 2018 - Anne Philipp (University of Vienna): |
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15 | # - applied PEP8 style guide |
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16 | # - added documentation |
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17 | # - optimisation of method list_files since it didn't work correctly |
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18 | # for sub directories |
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19 | # - additional speed up of method list_files |
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20 | # - modified the class so that it is initiated with a pattern instead |
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21 | # of suffixes. Gives more precision in selection of files. |
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22 | # |
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23 | # @License: |
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24 | # (C) Copyright 2014-2018. |
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25 | # |
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26 | # This software is licensed under the terms of the Apache Licence Version 2.0 |
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27 | # which can be obtained at http://www.apache.org/licenses/LICENSE-2.0. |
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28 | # |
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29 | # @Class Decription: |
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30 | # The class is for file manipulation. It is initiated with a regular |
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31 | # expression pattern for this instance and can produce a list of Files |
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32 | # from the given file pattern. These files can be deleted. |
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33 | # |
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34 | # @Class Content: |
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35 | # - __init__ |
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36 | # - __str__ |
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37 | # - __list_files__ |
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38 | # - delete_files |
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39 | # |
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40 | # @Class Attributes: |
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41 | # - pattern |
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42 | # - files |
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43 | # |
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44 | #******************************************************************************* |
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45 | |
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46 | # ------------------------------------------------------------------------------ |
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47 | # MODULES |
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48 | # ------------------------------------------------------------------------------ |
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49 | import os |
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50 | import sys |
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51 | import fnmatch |
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52 | |
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53 | # software specific module from flex_extract |
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54 | sys.path.append('../') |
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55 | #import profiling |
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56 | from mods.tools import silent_remove, get_list_as_string |
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57 | |
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58 | # ------------------------------------------------------------------------------ |
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59 | # CLASS |
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60 | # ------------------------------------------------------------------------------ |
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61 | |
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62 | class UioFiles(object): |
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63 | '''Class to manipulate files. At initialisation it has the pattern |
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64 | which stores a regular expression pattern for the files, the path |
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65 | to the files and the files already. |
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66 | ''' |
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67 | # -------------------------------------------------------------------------- |
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68 | # CLASS FUNCTIONS |
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69 | # -------------------------------------------------------------------------- |
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70 | def __init__(self, path, pattern): |
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71 | '''Assignes a specific pattern for these files. |
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72 | |
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73 | Parameters |
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74 | ---------- |
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75 | path : :obj:`string` |
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76 | Directory where to list the files. |
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77 | |
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78 | pattern : :obj:`string` |
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79 | Regular expression pattern. For example: '\*.grb' |
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80 | |
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81 | Return |
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82 | ------ |
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83 | |
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84 | ''' |
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85 | |
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86 | self.path = path |
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87 | self.pattern = pattern |
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88 | self.files = [] |
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89 | |
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90 | self.__list_files__(self.path) |
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91 | |
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92 | return |
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93 | |
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94 | #@profiling.timefn |
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95 | def __list_files__(self, path): |
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96 | '''Lists all files in the directory with the matching |
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97 | regular expression pattern. |
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98 | |
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99 | Parameters |
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100 | ---------- |
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101 | path : :obj:`string` |
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102 | Path to the files. |
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103 | |
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104 | Return |
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105 | ------ |
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106 | |
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107 | ''' |
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108 | # Get the absolute path |
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109 | path = os.path.abspath(path) |
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110 | |
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111 | # get all files in the dir and subdir as absolut path |
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112 | for root, dirnames, filenames in os.walk(path): |
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113 | for filename in fnmatch.filter(filenames, self.pattern): |
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114 | self.files.append(os.path.join(root, filename)) |
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115 | |
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116 | return |
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117 | |
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118 | def __str__(self): |
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119 | '''Converts the list of files into a single string. |
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120 | The entries are sepereated by "," sign. |
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121 | |
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122 | Parameters |
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123 | ---------- |
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124 | |
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125 | Return |
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126 | ------ |
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127 | files_string : :obj:`string` |
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128 | The content of the list as a single string. |
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129 | ''' |
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130 | |
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131 | filenames = [os.path.basename(f) for f in self.files] |
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132 | files_string = get_list_as_string(filenames, concatenate_sign=', ') |
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133 | |
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134 | return files_string |
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135 | |
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136 | def delete_files(self): |
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137 | '''Deletes the files. |
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138 | |
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139 | Parameters |
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140 | ---------- |
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141 | |
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142 | Return |
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143 | ------ |
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144 | |
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145 | ''' |
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146 | |
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147 | for old_file in self.files: |
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148 | silent_remove(old_file) |
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149 | |
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150 | return |
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