[2fb99de] | 1 | #!/usr/bin/env python |
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| 2 | # -*- coding: utf-8 -*- |
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| 3 | #******************************************************************************* |
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| 4 | # @Author: Anne Fouilloux (University of Oslo) |
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| 5 | # |
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| 6 | # @Date: October 2014 |
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| 7 | # |
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| 8 | # @Change History: |
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| 9 | # |
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| 10 | # November 2015 - Leopold Haimberger (University of Vienna): |
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| 11 | # - modified method list_files to work with glob instead of listdir |
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| 12 | # - added pattern search in method list_files |
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| 13 | # |
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| 14 | # February 2018 - Anne Philipp (University of Vienna): |
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| 15 | # - applied PEP8 style guide |
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| 16 | # - added documentation |
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| 17 | # - optimisation of method list_files since it didn't work correctly |
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| 18 | # for sub directories |
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| 19 | # - additional speed up of method list_files |
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| 20 | # - modified the class so that it is initiated with a pattern instead |
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| 21 | # of suffixes. Gives more precision in selection of files. |
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| 22 | # |
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| 23 | # @License: |
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| 24 | # (C) Copyright 2014-2018. |
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| 25 | # |
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| 26 | # This software is licensed under the terms of the Apache Licence Version 2.0 |
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| 27 | # which can be obtained at http://www.apache.org/licenses/LICENSE-2.0. |
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| 28 | # |
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| 29 | # @Class Decription: |
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| 30 | # The class is for file manipulation. It is initiated with a regular |
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| 31 | # expression pattern for this instance and can produce a list of Files |
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| 32 | # from the given file pattern. These files can be deleted. |
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| 33 | # |
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| 34 | # @Class Content: |
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| 35 | # - __init__ |
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| 36 | # - __str__ |
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| 37 | # - __list_files__ |
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| 38 | # - delete_files |
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| 39 | # |
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| 40 | # @Class Attributes: |
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| 41 | # - pattern |
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| 42 | # - files |
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| 43 | # |
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| 44 | #******************************************************************************* |
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| 45 | |
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| 46 | # ------------------------------------------------------------------------------ |
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| 47 | # MODULES |
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| 48 | # ------------------------------------------------------------------------------ |
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| 49 | import os |
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| 50 | import fnmatch |
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| 51 | |
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| 52 | # software specific module from flex_extract |
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| 53 | #import profiling |
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[25b14be] | 54 | from mods.tools import silent_remove, get_list_as_string |
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[2fb99de] | 55 | |
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| 56 | # ------------------------------------------------------------------------------ |
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| 57 | # CLASS |
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| 58 | # ------------------------------------------------------------------------------ |
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| 59 | |
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| 60 | class UioFiles(object): |
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| 61 | ''' |
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[25b14be] | 62 | Class to manipulate files. At initialisation it has the pattern |
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| 63 | which stores a regular expression pattern for the files, the path |
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| 64 | to the files and the files already. |
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[2fb99de] | 65 | ''' |
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| 66 | # -------------------------------------------------------------------------- |
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| 67 | # CLASS FUNCTIONS |
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| 68 | # -------------------------------------------------------------------------- |
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| 69 | def __init__(self, path, pattern): |
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| 70 | ''' |
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| 71 | @Description: |
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| 72 | Assignes a specific pattern for these files. |
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| 73 | |
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| 74 | @Input: |
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| 75 | self: instance of UioFiles |
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| 76 | Description see class documentation. |
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| 77 | |
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| 78 | path: string |
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| 79 | Directory where to list the files. |
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| 80 | |
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| 81 | pattern: string |
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| 82 | Regular expression pattern. For example: '*.grb' |
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| 83 | |
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| 84 | @Return: |
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| 85 | <nothing> |
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| 86 | ''' |
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| 87 | |
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| 88 | self.path = path |
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| 89 | self.pattern = pattern |
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[25b14be] | 90 | self.files = [] |
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[2fb99de] | 91 | |
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| 92 | self.__list_files__(self.path) |
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| 93 | |
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| 94 | return |
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| 95 | |
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| 96 | #@profiling.timefn |
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[25b14be] | 97 | def __list_files__(self, path): |
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[2fb99de] | 98 | ''' |
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| 99 | @Description: |
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| 100 | Lists all files in the directory with the matching |
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| 101 | regular expression pattern. |
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| 102 | |
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| 103 | @Input: |
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| 104 | self: instance of UioFiles |
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| 105 | Description see class documentation. |
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| 106 | |
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| 107 | path: string |
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| 108 | Path to the files. |
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| 109 | |
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| 110 | @Return: |
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| 111 | <nothing> |
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| 112 | ''' |
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| 113 | # Get the absolute path |
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| 114 | path = os.path.abspath(path) |
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| 115 | |
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[25b14be] | 116 | # get all files in the dir and subdir as absolut path |
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| 117 | for root, dirnames, filenames in os.walk(path): |
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| 118 | for filename in fnmatch.filter(filenames, self.pattern): |
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| 119 | self.files.append(os.path.join(root, filename)) |
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[2fb99de] | 120 | |
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| 121 | return |
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| 122 | |
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| 123 | def __str__(self): |
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| 124 | ''' |
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| 125 | @Description: |
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| 126 | Converts the list of files into a single string. |
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| 127 | The entries are sepereated by "," sign. |
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| 128 | |
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| 129 | @Input: |
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| 130 | self: instance of UioFiles |
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| 131 | Description see class documentation. |
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| 132 | |
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| 133 | @Return: |
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| 134 | files_string: string |
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| 135 | The content of the list as a single string. |
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| 136 | ''' |
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| 137 | |
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| 138 | filenames = [os.path.basename(f) for f in self.files] |
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| 139 | files_string = get_list_as_string(filenames, concatenate_sign=', ') |
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| 140 | |
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| 141 | return files_string |
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| 142 | |
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| 143 | def delete_files(self): |
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| 144 | ''' |
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| 145 | @Description: |
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| 146 | Deletes the files. |
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| 147 | |
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| 148 | @Input: |
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| 149 | self: instance of UioFiles |
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| 150 | Description see class documentation. |
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| 151 | |
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| 152 | @Return: |
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| 153 | <nothing> |
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| 154 | ''' |
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| 155 | |
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| 156 | for old_file in self.files: |
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| 157 | silent_remove(old_file) |
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| 158 | |
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| 159 | return |
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