[efdb01a] | 1 | #!/usr/bin/env python |
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| 2 | # -*- coding: utf-8 -*- |
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[991df6a] | 3 | #******************************************************************************* |
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| 4 | # @Author: Anne Fouilloux (University of Oslo) |
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| 5 | # |
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| 6 | # @Date: October 2014 |
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| 7 | # |
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| 8 | # @Change History: |
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| 9 | # |
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| 10 | # November 2015 - Leopold Haimberger (University of Vienna): |
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[ff99eae] | 11 | # - optimized display_info |
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| 12 | # - optimized data_retrieve and seperate between python and shell |
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[991df6a] | 13 | # script call |
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| 14 | # |
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| 15 | # February 2018 - Anne Philipp (University of Vienna): |
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| 16 | # - applied PEP8 style guide |
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| 17 | # - added documentation |
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| 18 | # - applied some minor modifications in programming style/structure |
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| 19 | # |
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| 20 | # @License: |
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| 21 | # (C) Copyright 2015-2018. |
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| 22 | # |
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| 23 | # This software is licensed under the terms of the Apache Licence Version 2.0 |
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| 24 | # which can be obtained at http://www.apache.org/licenses/LICENSE-2.0. |
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| 25 | # |
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| 26 | # @Class Description: |
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| 27 | # A MARS revtrieval has a specific syntax with a selection of keywords and |
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| 28 | # their corresponding values. This class provides the necessary functions |
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| 29 | # by displaying the selected parameters and their values and the actual |
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| 30 | # retrievement of the data through a mars request or a Python web api |
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| 31 | # interface. The initialization already expects all the keyword values. |
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| 32 | # |
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| 33 | # @Class Content: |
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| 34 | # - __init__ |
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[ff99eae] | 35 | # - display_info |
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| 36 | # - data_retrieve |
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| 37 | # |
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| 38 | # @Class Attributes: |
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| 39 | # - server |
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| 40 | # - marsclass |
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| 41 | # - dtype |
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| 42 | # - levtype |
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| 43 | # - levelist |
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| 44 | # - repres |
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| 45 | # - date |
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| 46 | # - resol |
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| 47 | # - stream |
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| 48 | # - area |
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| 49 | # - time |
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| 50 | # - step |
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| 51 | # - expver |
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| 52 | # - number |
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| 53 | # - accuracy |
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| 54 | # - grid |
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| 55 | # - gaussian |
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| 56 | # - target |
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| 57 | # - param |
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[991df6a] | 58 | # |
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| 59 | #******************************************************************************* |
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| 60 | |
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| 61 | # ------------------------------------------------------------------------------ |
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[efdb01a] | 62 | # MODULES |
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| 63 | # ------------------------------------------------------------------------------ |
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| 64 | import os |
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[ca867de] | 65 | import sys |
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| 66 | import subprocess |
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[efdb01a] | 67 | |
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[ca867de] | 68 | # software specific classes and modules from flex_extract |
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| 69 | sys.path.append('../') |
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[2fb99de] | 70 | import _config |
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[efdb01a] | 71 | # ------------------------------------------------------------------------------ |
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| 72 | # CLASS |
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| 73 | # ------------------------------------------------------------------------------ |
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[ff99eae] | 74 | class MarsRetrieval(object): |
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[274f9ef] | 75 | '''Class for submitting MARS retrievals. |
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[efdb01a] | 76 | |
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| 77 | A description of MARS keywords/arguments and examples of their |
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| 78 | values can be found here: |
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| 79 | https://software.ecmwf.int/wiki/display/UDOC/\ |
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| 80 | Identification+keywords#Identificationkeywords-class |
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| 81 | ''' |
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| 82 | |
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[5bad6ec] | 83 | def __init__(self, server, public, marsclass="ei", dataset="", type="", |
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| 84 | levtype="", levelist="", repres="", date="", resol="", |
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| 85 | stream="", area="", time="", step="", expver="1", |
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| 86 | number="", accuracy="", grid="", gaussian="", target="", |
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[ff99eae] | 87 | param=""): |
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[274f9ef] | 88 | '''Initialises the instance of the MarsRetrieval class and |
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| 89 | defines and assigns a set of the necessary retrieval parameters |
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| 90 | for the FLEXPART input data. |
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| 91 | A description of MARS keywords/arguments, their dependencies |
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| 92 | on each other and examples of their values can be found here: |
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| 93 | |
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| 94 | https://software.ecmwf.int/wiki/display/UDOC/MARS+keywords |
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| 95 | |
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| 96 | Parameters |
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| 97 | ---------- |
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| 98 | server : :obj:`ECMWFService` |
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| 99 | This is the connection to the ECMWF data servers. |
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| 100 | It is needed for the pythonic access of ECMWF data. |
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| 101 | |
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| 102 | public : :obj:`integer` |
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| 103 | Decides which Web API version is used: |
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| 104 | 0: member-state users and full archive access |
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| 105 | 1: public access and limited access to the public server and |
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| 106 | datasets. Needs the parameter dataset. |
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| 107 | Default is "0" and for member-state users. |
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| 108 | |
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| 109 | marsclass : :obj:`string`, optional |
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| 110 | Characterisation of dataset. E.g. EI (ERA-Interim), |
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| 111 | E4 (ERA40), OD (Operational archive), ea (ERA5). |
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| 112 | Default is the ERA-Interim dataset "ei". |
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| 113 | |
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| 114 | dataset : :obj:`string`, optional |
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| 115 | For public datasets there is the specific naming and parameter |
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| 116 | dataset which has to be used to characterize the type of |
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| 117 | data. Usually there is less data available, either in times, |
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| 118 | domain or parameter. |
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| 119 | Default is an empty string. |
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| 120 | |
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| 121 | type : :obj:`string`, optional |
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| 122 | Determines the type of fields to be retrieved. |
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| 123 | Selects between observations, images or fields. |
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| 124 | Examples for fields: Analysis (an), Forecast (fc), |
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| 125 | Perturbed Forecast (pf), Control Forecast (cf) and so on. |
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| 126 | Default is an empty string. |
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| 127 | |
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| 128 | levtype : :obj:`string`, optional |
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| 129 | Denotes type of level. Has a direct implication on valid |
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| 130 | levelist values! |
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| 131 | E.g. model level (ml), pressure level (pl), surface (sfc), |
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| 132 | potential vorticity (pv), potential temperature (pt) |
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| 133 | and depth (dp). |
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| 134 | Default is an empty string. |
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| 135 | |
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| 136 | levelist : :obj:`string`, optional |
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| 137 | Specifies the required levels. It has to have a valid |
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| 138 | correspondence to the selected levtype. |
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| 139 | Examples: model level: 1/to/137, pressure levels: 500/to/1000 |
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| 140 | Default is an empty string. |
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| 141 | |
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| 142 | repres : :obj:`string`, optional |
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| 143 | Selects the representation of the archived data. |
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| 144 | E.g. sh - spherical harmonics, gg - Gaussian grid, |
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| 145 | ll - latitude/longitude, ... |
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| 146 | Default is an empty string. |
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| 147 | |
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| 148 | date : :obj:`string`, optional |
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| 149 | Specifies the Analysis date, the Forecast base date or |
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| 150 | Observations date. Valid formats are: |
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| 151 | Absolute as YYYY-MM-DD or YYYYMMDD. |
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| 152 | Default is an empty string. |
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| 153 | |
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| 154 | resol : :obj:`string`, optional |
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| 155 | Specifies the desired triangular truncation of retrieved data, |
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| 156 | before carrying out any other selected post-processing. |
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| 157 | The default is automatic truncation (auto), by which the lowest |
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| 158 | resolution compatible with the value specified in grid is |
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| 159 | automatically selected for the retrieval. |
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| 160 | Users wanting to perform post-processing from full spectral |
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| 161 | resolution should specify Archived Value (av). |
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| 162 | The following are examples of existing resolutions found in |
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| 163 | the archive: 63, 106, 159, 213, 255, 319, 399, 511, 799 or 1279. |
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| 164 | This keyword has no meaning/effect if the archived data is |
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| 165 | not in spherical harmonics representation. |
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| 166 | The best selection can be found here: |
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| 167 | https://software.ecmwf.int/wiki/display/UDOC/\ |
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| 168 | Retrieve#Retrieve-Truncationbeforeinterpolation |
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| 169 | Default is an empty string. |
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| 170 | |
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| 171 | stream : :obj:`string`, optional |
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| 172 | Identifies the forecasting system used to generate the data. |
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| 173 | E.g. oper (Atmospheric model), enfo (Ensemble forecats), ... |
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| 174 | Default is an empty string. |
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| 175 | |
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| 176 | area : :obj:`string`, optional |
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| 177 | Specifies the desired sub-area of data to be extracted. |
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| 178 | Areas can be defined to wrap around the globe. |
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| 179 | |
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| 180 | Latitude values must be given as signed numbers, with: |
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| 181 | north latitudes (i.e. north of the equator) |
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| 182 | being positive (e.g: 40.5) |
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| 183 | south latitutes (i.e. south of the equator) |
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| 184 | being negative (e.g: -50.5) |
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| 185 | Longtitude values must be given as signed numbers, with: |
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| 186 | east longitudes (i.e. east of the 0 degree meridian) |
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| 187 | being positive (e.g: 35.0) |
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| 188 | west longitudes (i.e. west of the 0 degree meridian) |
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| 189 | being negative (e.g: -20.5) |
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| 190 | |
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| 191 | E.g.: North/West/South/East |
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| 192 | Default is an empty string. |
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| 193 | |
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| 194 | time : :obj:`string`, optional |
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| 195 | Specifies the time of the data in hours and minutes. |
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| 196 | Valid values depend on the type of data: Analysis time, |
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| 197 | Forecast base time or First guess verification time |
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| 198 | (all usually at synoptic hours: 00, 06, 12 and 18 ). |
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| 199 | Observation time (any combination in hours and minutes is valid, |
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| 200 | subject to data availability in the archive). |
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| 201 | The syntax is HHMM or HH:MM. If MM is omitted it defaults to 00. |
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| 202 | Default is an empty string. |
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| 203 | |
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| 204 | step : :obj:`string`, optional |
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| 205 | Specifies the forecast time step from forecast base time. |
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| 206 | Valid values are hours (HH) from forecast base time. It also |
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| 207 | specifies the length of the forecast which verifies at |
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| 208 | First Guess time. |
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| 209 | E.g. 1/3/6-hourly |
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| 210 | Default is an empty string. |
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| 211 | |
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| 212 | expver : :obj:`string`, optional |
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| 213 | The version of the dataset. Each experiment is assigned a |
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| 214 | unique code (version). Production data is assigned 1 or 2, |
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| 215 | and experimental data in Operations 11, 12 ,... |
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| 216 | Research or Member State's experiments have a four letter |
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| 217 | experiment identifier. |
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| 218 | Default is "1". |
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| 219 | |
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| 220 | number : :obj:`string`, optional |
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| 221 | Selects the member in ensemble forecast run. (Only then it |
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| 222 | is necessary.) It has a different meaning depending on |
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| 223 | the type of data. |
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| 224 | E.g. Perturbed Forecasts: specifies the Ensemble forecast member |
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| 225 | Default is an empty string. |
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| 226 | |
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| 227 | accuracy : :obj:`string`, optional |
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| 228 | Specifies the number of bits per value to be used in the |
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| 229 | generated GRIB coded fields. |
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| 230 | A positive integer may be given to specify the preferred number |
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| 231 | of bits per packed value. This must not be greater than the |
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| 232 | number of bits normally used for a Fortran integer on the |
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| 233 | processor handling the request (typically 32 or 64 bit). |
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| 234 | Within a compute request the accuracy of the original fields |
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| 235 | can be passed to the result field by specifying accuracy=av. |
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| 236 | Default is an empty string. |
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| 237 | |
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| 238 | grid : :obj:`string`, optional |
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| 239 | Specifies the output grid which can be either a Gaussian grid |
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| 240 | or a Latitude/Longitude grid. MARS requests specifying |
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| 241 | grid=av will return the archived model grid. |
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| 242 | |
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| 243 | Lat/Lon grid: The grid spacing needs to be an integer |
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| 244 | fraction of 90 degrees e.g. grid = 0.5/0.5 |
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| 245 | |
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| 246 | Gaussian grid: specified by a letter denoting the type of |
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| 247 | Gaussian grid followed by an integer (the grid number) |
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| 248 | representing the number of lines between the Pole and Equator, |
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| 249 | e.g. |
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| 250 | grid = F160 - full (or regular) Gaussian grid with |
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| 251 | 160 latitude lines between the pole and equator |
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| 252 | grid = N320 - ECMWF original reduced Gaussian grid with |
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| 253 | 320 latitude lines between the pole and equator, |
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| 254 | see Reduced Gaussian Grids for grid numbers used at ECMWF |
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| 255 | grid = O640 - ECMWF octahedral (reduced) Gaussian grid with |
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| 256 | 640 latitude lines between the pole and equator |
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| 257 | Default is an empty string. |
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| 258 | |
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| 259 | gaussian : :obj:`string`, optional |
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| 260 | This parameter is deprecated and should no longer be used. |
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| 261 | Specifies the desired type of Gaussian grid for the output. |
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| 262 | Valid Gaussian grids are quasi-regular (reduced) or regular. |
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| 263 | Keyword gaussian can only be specified together with |
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| 264 | keyword grid. Gaussian without grid has no effect. |
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| 265 | Default is an empty string. |
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| 266 | |
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| 267 | target : :obj:`string`, optional |
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| 268 | Specifies a file into which data is to be written after |
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| 269 | retrieval or manipulation. Path names should always be |
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| 270 | enclosed in double quotes. The MARS client supports automatic |
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| 271 | generation of multiple target files using MARS keywords |
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| 272 | enclosed in square brackets [ ]. If the environment variable |
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| 273 | MARS_MULTITARGET_STRICT_FORMAT is set to 1 before calling mars, |
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| 274 | the keyword values will be used in the filename as shown by |
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| 275 | the ecCodes GRIB tool grib_ls -m, e.g. with |
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| 276 | MARS_MULTITARGET_STRICT_FORMAT set to 1 the keywords time, |
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| 277 | expver and param will be formatted as 0600, 0001 and 129.128 |
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| 278 | rather than 600, 1 and 129. |
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| 279 | Default is an empty string. |
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| 280 | |
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| 281 | param : :obj:`string`, optional |
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| 282 | Specifies the meteorological parameter. |
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| 283 | The list of meteorological parameters in MARS is extensive. |
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| 284 | Their availability is directly related to their meteorological |
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| 285 | meaning and, therefore, the rest of directives specified |
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| 286 | in the MARS request. |
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| 287 | Meteorological parameters can be specified by their |
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| 288 | GRIB code (param=130), their mnemonic (param=t) or |
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| 289 | full name (param=temperature). |
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| 290 | The list of parameter should be seperated by a "/"-sign. |
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| 291 | E.g. 130/131/133 |
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| 292 | Default is an empty string. |
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| 293 | |
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| 294 | Return |
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| 295 | ------ |
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| 296 | |
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[efdb01a] | 297 | ''' |
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| 298 | |
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| 299 | self.server = server |
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[5bad6ec] | 300 | self.public = public |
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[efdb01a] | 301 | self.marsclass = marsclass |
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[5bad6ec] | 302 | self.dataset = dataset |
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[54a8a01] | 303 | self.type = type |
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[efdb01a] | 304 | self.levtype = levtype |
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| 305 | self.levelist = levelist |
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| 306 | self.repres = repres |
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| 307 | self.date = date |
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| 308 | self.resol = resol |
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| 309 | self.stream = stream |
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| 310 | self.area = area |
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| 311 | self.time = time |
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| 312 | self.step = step |
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| 313 | self.expver = expver |
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| 314 | self.number = number |
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| 315 | self.accuracy = accuracy |
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| 316 | self.grid = grid |
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| 317 | self.gaussian = gaussian |
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| 318 | self.target = target |
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| 319 | self.param = param |
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| 320 | |
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| 321 | return |
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| 322 | |
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| 323 | |
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[ff99eae] | 324 | def display_info(self): |
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[274f9ef] | 325 | '''Prints all class attributes and their values to the |
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| 326 | standard output. |
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| 327 | |
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| 328 | Parameters |
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| 329 | ---------- |
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[efdb01a] | 330 | |
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[274f9ef] | 331 | Return |
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| 332 | ------ |
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[efdb01a] | 333 | |
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| 334 | ''' |
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| 335 | # Get all class attributes and their values as a dictionary |
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[5bad6ec] | 336 | attrs = vars(self).copy() |
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[efdb01a] | 337 | |
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| 338 | # iterate through all attributes and print them |
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| 339 | # with their corresponding values |
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| 340 | for item in attrs.items(): |
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[5bad6ec] | 341 | if item[0] in ['server', 'public']: |
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[efdb01a] | 342 | pass |
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| 343 | else: |
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[2fb99de] | 344 | print(item[0] + ': ' + str(item[1])) |
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| 345 | |
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| 346 | return |
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| 347 | |
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| 348 | |
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[295ff45] | 349 | def print_info(self, inputdir, request_number): |
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[274f9ef] | 350 | '''Prints all mars requests to an extra file for debugging and |
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| 351 | information. |
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[2fb99de] | 352 | |
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[274f9ef] | 353 | Parameters |
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| 354 | ---------- |
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| 355 | inputdir : :obj:`string` |
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| 356 | The path where all data from the retrievals are stored. |
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[2fb99de] | 357 | |
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[274f9ef] | 358 | request_number : :obj:`integer` |
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| 359 | Number of mars requests for flux and non-flux data. |
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[25b14be] | 360 | |
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[274f9ef] | 361 | Return |
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| 362 | ------ |
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[295ff45] | 363 | |
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[2fb99de] | 364 | ''' |
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| 365 | # Get all class attributes and their values as a dictionary |
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[5bad6ec] | 366 | attrs = vars(self).copy() |
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[2fb99de] | 367 | |
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| 368 | # open a file to store all requests to |
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[25b14be] | 369 | with open(os.path.join(inputdir, |
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[2fb99de] | 370 | _config.FILE_MARS_REQUESTS), 'a') as f: |
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[295ff45] | 371 | f.write('mars_request #' + str(request_number) + '\n') |
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[2fb99de] | 372 | # iterate through all attributes and print them |
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| 373 | # with their corresponding values |
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| 374 | for item in attrs.items(): |
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[5bad6ec] | 375 | if item[0] in ['server', 'public']: |
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[2fb99de] | 376 | pass |
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| 377 | else: |
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| 378 | f.write(item[0] + ': ' + str(item[1]) + '\n') |
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| 379 | f.write('\n\n') |
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[efdb01a] | 380 | |
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| 381 | return |
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| 382 | |
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[295ff45] | 383 | |
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| 384 | def print_infodata_csv(self, inputdir, request_number): |
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[274f9ef] | 385 | '''Write all request parameter in alpabetical order into a "csv" file. |
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[295ff45] | 386 | |
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[274f9ef] | 387 | Parameters |
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| 388 | ---------- |
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| 389 | inputdir : :obj:`string` |
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| 390 | The path where all data from the retrievals are stored. |
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[295ff45] | 391 | |
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[274f9ef] | 392 | request_number : :obj:`integer` |
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| 393 | Number of mars requests for flux and non-flux data. |
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[295ff45] | 394 | |
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[274f9ef] | 395 | Return |
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| 396 | ------ |
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[295ff45] | 397 | |
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| 398 | ''' |
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| 399 | |
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| 400 | # Get all class attributes and their values as a dictionary |
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[5bad6ec] | 401 | attrs = vars(self).copy() |
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[295ff45] | 402 | del attrs['server'] |
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[5bad6ec] | 403 | del attrs['public'] |
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[295ff45] | 404 | |
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| 405 | # open a file to store all requests to |
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| 406 | with open(os.path.join(inputdir, |
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[70fee58] | 407 | _config.FILE_MARS_REQUESTS), 'a') as f: |
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[295ff45] | 408 | f.write(str(request_number) + ', ') |
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| 409 | f.write(', '.join(str(attrs[key]) |
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| 410 | for key in sorted(attrs.iterkeys()))) |
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| 411 | f.write('\n') |
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| 412 | |
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| 413 | return |
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| 414 | |
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[ff99eae] | 415 | def data_retrieve(self): |
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[274f9ef] | 416 | '''Submits a MARS retrieval. Depending on the existence of |
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| 417 | ECMWF Web-API it is submitted via Python or a |
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| 418 | subprocess in the Shell. The parameter for the mars retrieval |
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| 419 | are taken from the defined class attributes. |
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| 420 | |
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| 421 | Parameters |
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| 422 | ---------- |
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| 423 | |
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| 424 | Return |
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| 425 | ------ |
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| 426 | |
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[efdb01a] | 427 | ''' |
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| 428 | # Get all class attributes and their values as a dictionary |
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[5bad6ec] | 429 | attrs = vars(self).copy() |
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| 430 | |
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| 431 | # eliminate unnecessary attributes from the dictionary attrs |
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| 432 | del attrs['server'] |
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| 433 | del attrs['public'] |
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| 434 | |
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| 435 | # exchange parameter name for marsclass |
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| 436 | mclass = attrs.get('marsclass') |
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| 437 | del attrs['marsclass'] |
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| 438 | attrs['class'] = mclass |
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| 439 | |
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| 440 | # prepare target variable as needed for the Web API mode |
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| 441 | # within the dictionary for full access |
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| 442 | # as a single variable for public access |
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| 443 | target = attrs.get('target') |
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| 444 | if not int(self.public): |
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| 445 | del attrs['target'] |
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| 446 | print('target: ' + target) |
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| 447 | |
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| 448 | # find all keys without a value and convert all other values to strings |
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| 449 | empty_keys = [] |
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[0e576fc] | 450 | for key, value in attrs.iteritems(): |
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[5bad6ec] | 451 | if value == '': |
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| 452 | empty_keys.append(str(key)) |
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[efdb01a] | 453 | else: |
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[5bad6ec] | 454 | attrs[key] = str(value) |
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| 455 | |
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| 456 | # delete all empty parameter from the dictionary |
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| 457 | for key in empty_keys: |
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| 458 | del attrs[key] |
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[efdb01a] | 459 | |
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| 460 | # MARS request via Python script |
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[5bad6ec] | 461 | if self.server: |
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[efdb01a] | 462 | try: |
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[5bad6ec] | 463 | if self.public: |
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| 464 | print('RETRIEVE PUBLIC DATA!') |
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| 465 | self.server.retrieve(attrs) |
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| 466 | else: |
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| 467 | print('EXECUTE NON-PUBLIC RETRIEVAL!') |
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| 468 | self.server.execute(attrs, target) |
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[efdb01a] | 469 | except: |
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[5bad6ec] | 470 | e = sys.exc_info()[0] |
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| 471 | print("ERROR: ", e) |
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| 472 | print('MARS Request failed!') |
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[0e576fc] | 473 | if not self.public and os.stat(target).st_size == 0: |
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| 474 | print('MARS Request returned no data - ' |
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| 475 | 'please check request') |
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| 476 | raise IOError |
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| 477 | elif self.public and os.stat(target).st_size == 0: |
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| 478 | print('Public MARS Request returned no data - ' |
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| 479 | 'please check request') |
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| 480 | raise IOError |
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| 481 | else: |
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| 482 | raise IOError |
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[efdb01a] | 483 | # MARS request via extra process in shell |
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| 484 | else: |
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[5bad6ec] | 485 | request_str = 'ret' |
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| 486 | for key, value in attrs.iteritems(): |
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| 487 | request_str = request_str + ',' + key + '=' + str(value) |
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| 488 | request_str += ',target="' + target + '"' |
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| 489 | p = subprocess.Popen(['mars'], |
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| 490 | stdin=subprocess.PIPE, |
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[efdb01a] | 491 | stdout=subprocess.PIPE, |
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[5bad6ec] | 492 | stderr=subprocess.PIPE, |
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| 493 | bufsize=1) |
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| 494 | pout = p.communicate(input=request_str)[0] |
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[2fb99de] | 495 | print(pout.decode()) |
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[efdb01a] | 496 | |
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| 497 | if 'Some errors reported' in pout.decode(): |
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[2fb99de] | 498 | print('MARS Request failed - please check request') |
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[efdb01a] | 499 | raise IOError |
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[5bad6ec] | 500 | elif os.stat(target).st_size == 0: |
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[2fb99de] | 501 | print('MARS Request returned no data - please check request') |
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[efdb01a] | 502 | raise IOError |
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| 503 | |
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| 504 | return |
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