source: flex_extract.git/run/jobscripts/job.ksh @ ca867de

dev
Last change on this file since ca867de was ca867de, checked in by Anne Philipp <anne.philipp@…>, 8 months ago

refactored functions in EcFlexpart? and did some minor changes

  • Property mode set to 100644
File size: 2.7 KB
Line 
1#!/bin/ksh
2
3# ON ECGB:
4# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
5# start with sbatch NAME_OF_THIS_FILE directly on machine
6
7#SBATCH --workdir=/scratch/ms/at/km4a
8#SBATCH --qos=normal
9#SBATCH --job-name=flex_ecmwf
10#SBATCH --output=flex_ecmwf.%j.out
11#SBATCH --error=flex_ecmwf.%j.out
12#SBATCH --mail-type=FAIL
13#SBATCH --time=12:00:00
14
15## CRAY specific batch requests
16##PBS -N flex_ecmwf
17##PBS -q np
18##PBS -S /usr/bin/ksh
19## -o /scratch/ms/spatlh00/lh0/flex_ecmwf.$PBS_JOBID.out
20## job output is in .ecaccess_DO_NOT_REMOVE
21##PBS -j oe
22##PBS -V
23##PBS -l EC_threads_per_task=24
24##PBS -l EC_memory_per_task=32000MB
25
26set -x
27export VERSION=7.1
28case $HOST in
29  *ecg*)
30  module load python
31  module unload grib_api
32  module unload emos
33  module load grib_api/1.14.5
34  module load emos/437-r64
35  export PATH=${PATH}:${HOME}/flex_extract_v7.1/source/python
36  ;;
37  *cca*)
38  module switch PrgEnv-cray PrgEnv-intel
39  module load grib_api
40  module load emos
41  module load python
42  export SCRATCH=$TMPDIR
43  export PATH=${PATH}:${HOME}/flex_extract_v7.1/source/python
44  ;;
45esac
46
47cd $SCRATCH
48mkdir -p python$$
49cd python$$
50
51export CONTROL=CONTROL
52
53cat >$CONTROL<<EOF
54accuracy 16
55addpar 186 187 188 235 139 39
56area
57basetime None
58controlfile CONTROL.temp
59cwc 0
60date_chunk 3
61debug 1
62destination annep@genericSftp
63dpdeta 1
64dtime 3
65ecfsdir ectmp:/${USER}/econdemand/
66ecgid at
67ecstorage 0
68ectrans 1
69ecuid km4a
70end_date 20120908
71eta 0
72etadiff 0
73etapar 77
74expver 1
75format GRIB1
76gateway srvx8.img.univie.ac.at
77gauss 1
78grib2flexpart 0
79grid 5000
80inputdir ../../run/workspace/test
81install_target None
82job_template job.temp
83left -15000
84level 60
85levelist 40/to/60
86logicals gauss omega omegadiff eta etadiff dpdeta cwc wrf grib2flexpart ecstorage ectrans debug request
87lower 30000
88mailfail ${USER}
89mailops ${USER}
90makefile Makefile.gfortran
91marsclass EI
92maxstep 11
93number OFF
94omega 0
95omegadiff 0
96outputdir ../../run/workspace/test
97ppid 41511
98prefix EI
99queue local
100request 1
101resol 63
102right 45000
103smooth 0
104start_date 20120908
105step 00 01 02 03 04 05 00 07 08 09 10 11 00 01 02 03 04 05 00 07 08 09 10 11
106stream OPER
107time 00 00 00 00 00 00 06 00 00 00 00 00 12 12 12 12 12 12 18 12 12 12 12 12
108type AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC
109upper 75000
110wrf 0
111EOF
112
113
114submit.py --controlfile=$CONTROL --inputdir=./work --outputdir=./work 1> prot 2>&1
115
116if [ $? -eq 0 ] ; then
117  l=0
118  for muser in `grep -i MAILOPS $CONTROL`; do
119      if [ $l -gt 0 ] ; then 
120         mail -s flex.${HOST}.$$ $muser <prot
121      fi
122      l=$(($l+1))
123  done
124else
125  l=0
126  for muser in `grep -i MAILFAIL $CONTROL`; do
127      if [ $l -gt 0 ] ; then 
128         mail -s "ERROR! flex.${HOST}.$$" $muser <prot
129      fi
130      l=$(($l+1))
131  done
132fi
133
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