source: flex_extract.git/run/jobscripts/job.ksh @ 40408cb

#!/bin/ksh

# ON ECGB:
# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
# start with sbatch NAME_OF_THIS_FILE directly on machine

#SBATCH --workdir=/scratch/ms/at/km4a
#SBATCH --qos=normal
#SBATCH --job-name=flex_ecmwf
#SBATCH --output=flex_ecmwf.%j.out
#SBATCH --error=flex_ecmwf.%j.out
#SBATCH --mail-type=FAIL
#SBATCH --time=12:00:00

## CRAY specific batch requests
##PBS -N flex_ecmwf
##PBS -q np
##PBS -S /usr/bin/ksh
## -o /scratch/ms/at/km4a/flex_ecmwf.${PBS_JOBID}.out
## job output is in .ecaccess_DO_NOT_REMOVE
##PBS -j oe
##PBS -V
##PBS -l EC_threads_per_task=24
##PBS -l EC_memory_per_task=32000MB

set -x
export VERSION=7.1
case ${HOST} in
  *ecg*)
  module load python
  module unload grib_api
  module unload emos
  module load grib_api/1.14.5
  module load emos/437-r64
  export PATH=${PATH}:${HOME}/flex_extract_v7.1/source/python
  ;;
  *cca*)
  module switch PrgEnv-cray PrgEnv-intel
  module load grib_api
  module load emos
  module load python
  export SCRATCH=${TMPDIR}
  export PATH=${PATH}:${HOME}/flex_extract_v7.1/source/python
  ;;
esac

cd ${SCRATCH}
mkdir -p python$$
cd python$$

export CONTROL=CONTROL

cat >${CONTROL}<<EOF
accmaxstep 24
acctime 18
acctype FC
accuracy 24
addpar 27 28 173 186 187 188 235 139 39 
area 
basetime None
controlfile CONTROL_CERA.testgrid
cwc 1
dataset None
date_chunk 3
debug 1
destination annep@genericSftp
dpdeta 1
dtime 3
ecfsdir ectmp:/${USER}/econdemand/
ecgid at
ecstorage 0
ectrans 1
ecuid km4a
end_date 20090108
eta 1
etadiff 0
etapar 77
expver 1
format GRIB1
gateway srvx8.img.univie.ac.at
gauss 0
gaussian 
grib2flexpart 0
grid 2000
inputdir /raid60/nas/tmc/Anne/Interpolation/flexextract/flex_extract_v7.1/run/workspace
install_target None
job_template job.temp
left -20000
level 91
levelist 1/to/91
logicals gauss omega omegadiff eta etadiff dpdeta cwc wrf grib2flexpart ecstorage ectrans debug request public 
lower 40000
mailfail ${USER} 
mailops ${USER} 
makefile Makefile.gfortran
marsclass EP
maxstep 0
number OFF
omega 0
omegadiff 0
outputdir /raid60/nas/tmc/Anne/Interpolation/flexextract/flex_extract_v7.1/run/workspace
prefix CE
public 0
queue ecgate
request 2
resol 106
right 60000
smooth 0
start_date 20090108
step 00 00 00 00 00 00 00 00 
stream ENDA
time 00 03 06 09 12 15 18 21 
type AN AN AN AN AN AN AN AN 
upper 60000
wrf 0
EOF


submit.py --controlfile=${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1

if [ $? -eq 0 ] ; then
  l=0
  for muser in `grep -i MAILOPS ${CONTROL}`; do
      if [ ${l} -gt 0 ] ; then 
         mail -s flex.${HOST}.$$ ${muser} <prot
      fi
      l=$((${l}+1))
  done
else
  l=0
  for muser in `grep -i MAILFAIL ${CONTROL}`; do
      if [ ${l} -gt 0 ] ; then 
         mail -s "ERROR! flex.${HOST}.$$" ${muser} <prot
      fi
      l=$((${l}+1))
  done
fi