[34b247b] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | # ON ECGB: |
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| 4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server |
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| 5 | # start with sbatch NAME_OF_THIS_FILE directly on machine |
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| 6 | |
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| 7 | #SBATCH --workdir=/scratch/ms/at/km4a |
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| 8 | #SBATCH --qos=normal |
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| 9 | #SBATCH --job-name=flex_ecmwf |
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| 10 | #SBATCH --output=flex_ecmwf.%j.out |
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| 11 | #SBATCH --error=flex_ecmwf.%j.out |
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| 12 | #SBATCH --mail-type=FAIL |
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| 13 | #SBATCH --time=12:00:00 |
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| 14 | |
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| 15 | ## CRAY specific batch requests |
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| 16 | ##PBS -N flex_ecmwf |
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| 17 | ##PBS -q ns |
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| 18 | ##PBS -S /usr/bin/ksh |
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| 19 | ##PBS -o /scratch/ms/at/km4a/flex_ecmwf.${Jobname}.${Job_ID}.out |
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| 20 | # job output is in .ecaccess_DO_NOT_REMOVE |
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| 21 | ##PBS -j oe |
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| 22 | ##PBS -V |
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| 23 | ##PBS -l EC_threads_per_task=1 |
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| 24 | ##PBS -l EC_memory_per_task=3200MB |
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| 25 | |
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| 26 | set -x |
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| 27 | export VERSION=7.1 |
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| 28 | case ${HOST} in |
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| 29 | *ecg*) |
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[c97d8ec] | 30 | module unload eccodes |
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[34b247b] | 31 | # module load python |
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[c97d8ec] | 32 | module unload grib_api |
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[34b247b] | 33 | module unload emos |
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[c97d8ec] | 34 | module load grib_api/1.27.0 |
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| 35 | module load emos/457-r64 |
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[34b247b] | 36 | export FLEXPART_ROOT_SCRIPTS=${HOME} |
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| 37 | export MAKEFILE=Makefile.gfortran |
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| 38 | ;; |
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| 39 | *cca*) |
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| 40 | module switch PrgEnv-cray PrgEnv-intel |
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| 41 | module load grib_api |
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| 42 | module load emos |
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| 43 | module load python |
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| 44 | echo ${GROUP} |
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| 45 | echo ${HOME} |
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| 46 | echo ${HOME} | awk -F / '{print $1, $2, $3, $4}' |
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| 47 | export GROUP=`echo ${HOME} | awk -F / '{print $4}'` |
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| 48 | export SCRATCH=/scratch/ms/${GROUP}/${USER} |
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| 49 | export FLEXPART_ROOT_SCRIPTS=${HOME} |
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| 50 | export MAKEFILE=Makefile.gfortran |
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| 51 | ;; |
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| 52 | esac |
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| 53 | |
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| 54 | mkdir -p ${FLEXPART_ROOT_SCRIPTS}/flex_extract_v${VERSION} |
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| 55 | cd ${FLEXPART_ROOT_SCRIPTS}/flex_extract_v${VERSION} # if FLEXPART_ROOT is not set this means cd to the home directory |
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| 56 | tar -xvf ${HOME}/flex_extract_v${VERSION}.tar |
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| 57 | cd source/fortran |
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| 58 | \rm *.o *.mod CONVERT2 |
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| 59 | make -f ${MAKEFILE} >flexcompile 2>flexcompile |
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| 60 | |
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| 61 | ls -l CONVERT2 >>flexcompile |
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| 62 | if [ $? -eq 0 ]; then |
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| 63 | echo 'SUCCESS!' >>flexcompile |
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| 64 | mail -s flexcompile.${HOST}.$$ ${USER} <flexcompile |
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| 65 | else |
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| 66 | echo Environment: >>flexcompile |
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| 67 | env >> flexcompile |
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| 68 | mail -s "ERROR! flexcompile.${HOST}.$$" ${USER} <flexcompile |
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| 69 | fi |
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