[e18f4b5] | 1 | #!/usr/bin/env python |
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| 2 | # |
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| 3 | # This software is licensed under the terms of the Apache Licence Version 2.0 |
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| 4 | # which can be obtained at http://www.apache.org/licenses/LICENSE-2.0. |
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| 5 | # |
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| 6 | # Functionality provided: Prepare input 3D-wind fields in hybrid coordinates + surface fields for FLEXPART runs |
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| 7 | # |
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| 8 | # Creation: October 2014 - Anne Fouilloux - University of Oslo |
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| 9 | # Extension November 2015 - Leopold Haimberger - University of Vienna for: |
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| 10 | # - using the WebAPI also for general MARS retrievals |
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| 11 | # - job submission on ecgate and cca |
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| 12 | # - job templates suitable for twice daily operational dissemination |
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| 13 | # - dividing retrievals of longer periods into digestable chunks |
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| 14 | # - retrieve also longer term forecasts, not only analyses and short term forecast data |
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| 15 | # - conversion into GRIB2 |
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| 16 | # - conversion into .fp format for faster execution of FLEXPART |
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| 17 | # |
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| 18 | # Further documentation may be obtained from www.flexpart.eu |
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| 19 | # |
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| 20 | # Requirements: |
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| 21 | # in addition to a standard python 2.6 or 2.7 installation the following packages need to be installed |
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| 22 | # ECMWF WebMARS, gribAPI with python enabled, emoslib, ecaccess web toolkit, all available from https://software.ecmwf.int/ |
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| 23 | # dateutils |
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| 24 | # matplotlib (optional, for debugging) |
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| 25 | # |
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| 26 | # |
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| 27 | import calendar |
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| 28 | import shutil |
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| 29 | import datetime |
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| 30 | import time |
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| 31 | import os,sys,glob |
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| 32 | import subprocess |
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| 33 | import inspect |
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| 34 | # add path to submit.py to pythonpath so that python finds its buddies |
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| 35 | localpythonpath=os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe()))) |
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| 36 | sys.path.append(localpythonpath) |
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| 37 | from UIOTools import UIOFiles |
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| 38 | from string import strip |
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| 39 | from argparse import ArgumentParser,ArgumentDefaultsHelpFormatter |
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| 40 | from GribTools import GribTools |
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| 41 | from FlexpartTools import EIFlexpart, Control, interpret_args_and_control, normalexit,myerror |
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| 42 | from getMARSdata import getMARSdata |
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| 43 | from prepareFLEXPART import prepareFLEXPART |
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| 44 | |
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| 45 | |
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| 46 | |
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| 47 | def main(): |
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| 48 | |
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| 49 | calledfromdir=os.getcwd() |
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| 50 | # os.chdir(localpythonpath) |
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| 51 | args,c=interpret_args_and_control() |
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| 52 | if args.queue==None: |
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| 53 | if c.inputdir[0]!='/': |
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| 54 | c.inputdir=os.path.join(calledfromdir,c.inputdir) |
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| 55 | if c.outputdir[0]!='/': |
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| 56 | c.outputdir=os.path.join(calledfromdir,c.outputdir) |
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| 57 | getMARSdata(args,c) |
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[51f9853] | 58 | if c.request == '0' or c.request == '2': |
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| 59 | prepareFLEXPART(args,c) |
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| 60 | normalexit(c) |
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| 61 | else: |
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| 62 | normalexit(c) |
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[e18f4b5] | 63 | else: |
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| 64 | submit(args.job_template,c,args.queue) |
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| 65 | |
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| 66 | |
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| 67 | def submit(jtemplate,c,queue): |
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| 68 | |
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| 69 | f=open(jtemplate) |
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| 70 | lftext=f.read().split('\n') |
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| 71 | insert_point=lftext.index('EOF') |
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| 72 | f.close() |
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| 73 | |
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| 74 | clist=c.tolist() |
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| 75 | colist=[] |
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| 76 | mt=0 |
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| 77 | for elem in clist: |
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| 78 | if 'maxstep' in elem: |
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| 79 | mt=int(elem.split(' ')[1]) |
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| 80 | |
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| 81 | for elem in clist: |
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| 82 | if 'start_date' in elem: |
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| 83 | elem='start_date '+'${MSJ_YEAR}${MSJ_MONTH}${MSJ_DAY}' |
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| 84 | if 'end_date' in elem: |
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| 85 | elem='start_date '+'${MSJ_YEAR}${MSJ_MONTH}${MSJ_DAY}' |
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| 86 | if 'base_time' in elem: |
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| 87 | elem='base_time '+'${MSJ_BASETIME}' |
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| 88 | if 'time' in elem and mt>24: |
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| 89 | elem='time '+'${MSJ_BASETIME} {MSJ_BASETIME}' |
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| 90 | colist.append(elem) |
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| 91 | |
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| 92 | lftextondemand=lftext[:insert_point]+clist+lftext[insert_point+2:] |
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| 93 | lftextoper=lftext[:insert_point]+colist+lftext[insert_point+2:] |
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| 94 | |
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| 95 | h=open('job.ksh','w') |
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| 96 | h.write('\n'.join(lftextondemand)) |
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| 97 | h.close() |
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| 98 | |
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| 99 | h=open('joboper.ksh','w') |
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| 100 | h.write('\n'.join(lftextoper)) |
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| 101 | h.close() |
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| 102 | |
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| 103 | try: |
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| 104 | p=subprocess.check_call(['ecaccess-job-submit','-queueName',queue,'job.ksh']) |
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| 105 | except: |
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| 106 | print 'ecaccess-job-submit failed, probably eccert has expired' |
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| 107 | exit(1) |
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| 108 | #pout=p.communicate(input=s)[0] |
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| 109 | print 'You should get an email with subject flex.hostname.pid' |
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| 110 | |
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| 111 | |
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| 112 | |
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| 113 | |
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| 114 | if __name__ == "__main__": |
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| 115 | main() |
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