1 | #!/bin/ksh |
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2 | |
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3 | # ON ECGB: |
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4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server |
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5 | # start with sbatch NAME_OF_THIS_FILE directly on machine |
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6 | |
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7 | #SBATCH --workdir=/scratch/ms/spatlh00/lh0 |
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8 | #SBATCH --qos=normal |
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9 | #SBATCH --job-name=flex_ecmwf |
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10 | #SBATCH --output=flex_ecmwf.%j.out |
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11 | #SBATCH --error=flex_ecmwf.%j.out |
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12 | #SBATCH --mail-type=FAIL |
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13 | #SBATCH --time=12:00:00 |
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14 | |
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15 | ## CRAY specific batch requests |
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16 | ##PBS -N flex_ecmwf |
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17 | ##PBS -q np |
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18 | ##PBS -S /usr/bin/ksh |
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19 | ## -o /scratch/ms/spatlh00/lh0/flex_ecmwf.$PBS_JOBID.out |
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20 | ## job output is in .ecaccess_DO_NOT_REMOVE |
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21 | ##PBS -j oe |
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22 | ##PBS -V |
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23 | ##PBS -l EC_threads_per_task=24 |
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24 | ##PBS -l EC_memory_per_task=32000MB |
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25 | |
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26 | set -x |
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27 | |
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28 | case $HOST in |
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29 | *ecg*) |
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30 | module load python |
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31 | module unload grib_api |
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32 | module unload emos |
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33 | module load grib_api/1.14.5 |
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34 | module load emos/437-r64 |
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35 | # export ECMWFDATA=$HOME/ECMWFDATA7.0 |
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36 | # export PYTHONPATH=$ECMWFDATA/python |
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37 | export PATH=${PATH}: |
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38 | ;; |
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39 | *cca*) |
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40 | module switch PrgEnv-cray PrgEnv-intel |
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41 | module load grib_api |
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42 | module load emos |
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43 | module load python |
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44 | export SCRATCH=$TMPDIR |
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45 | # export ECMWFDATA=$HOME/ECMWFDATA7.0 |
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46 | # export PYTHONPATH=$ECMWFDATA/python |
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47 | export PATH=${PATH}: |
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48 | ;; |
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49 | # *) |
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50 | # export ECMWFDATA=$HOME/ECMWFDATA7.0 |
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51 | # export PATH=/opt/anaconda/bin:$ECMWFDATA/python:${PATH} |
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52 | # export PYTHONPATH=/opt/anaconda/lib/python2.7/site-packages/grib_api:$ECMWFDATA/python |
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53 | # export SCRATCH=$ECMWFDATA/python |
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54 | # which python |
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55 | # ;; |
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56 | esac |
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57 | |
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58 | cd $SCRATCH |
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59 | mkdir -p python$$ |
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60 | cd python$$ |
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61 | |
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62 | export CONTROL=CONTROL |
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63 | |
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64 | cat >>$CONTROL<<EOF |
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65 | EOF |
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66 | |
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67 | |
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68 | submit.py --controlfile=$CONTROL --inputdir=./work --outputdir=./work >prot |
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69 | |
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70 | if [ $? -eq 0 ] ; then |
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71 | l=0 |
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72 | for muser in `grep -i MAILOPS $CONTROL`; do |
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73 | if [ $l -gt 0 ] ; then |
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74 | mail -s flex.${HOST}.$$ $muser <prot |
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75 | fi |
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76 | l=$(($l+1)) |
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77 | done |
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78 | else |
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79 | l=0 |
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80 | for muser in `grep -i MAILFAIL $CONTROL`; do |
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81 | if [ $l -gt 0 ] ; then |
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82 | mail -s "ERROR! flex.${HOST}.$$" $muser <prot |
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83 | fi |
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84 | l=$(($l+1)) |
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85 | done |
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86 | fi |
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