1 | #!/bin/ksh |
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2 | |
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3 | # ON ECGB: |
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4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server |
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5 | # start with sbatch NAME_OF_THIS_FILE directly on machine |
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6 | |
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7 | #SBATCH --workdir=/scratch/ms/spatlh00/lh0 |
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8 | #SBATCH --qos=normal |
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9 | #SBATCH --job-name=flex_ecmwf |
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10 | #SBATCH --output=flex_ecmwf.%j.out |
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11 | #SBATCH --error=flex_ecmwf.%j.out |
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12 | #SBATCH --mail-type=FAIL |
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13 | #SBATCH --time=12:00:00 |
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14 | |
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15 | ## CRAY specific batch requests |
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16 | ##PBS -N flex_ecmwf |
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17 | ##PBS -q ns |
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18 | ##PBS -S /usr/bin/ksh |
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19 | # -o /scratch/ms/no/sbc/flex_ecmwf.$Jobname.$Job_ID.out |
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20 | # job output is in .ecaccess_DO_NOT_REMOVE |
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21 | ##PBS -j oe |
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22 | ##PBS -V |
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23 | ##PBS -l EC_threads_per_task=1 |
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24 | ##PBS -l EC_memory_per_task=3200MB |
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25 | |
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26 | set -x |
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27 | export VERSION=7.1 |
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28 | case $HOST in |
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29 | *ecg*) |
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30 | module load python |
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31 | module unload grib_api |
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32 | module unload emos |
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33 | module load grib_api/1.14.5 |
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34 | module load emos/437-r64 |
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35 | export FLEXPART_ROOT_SCRIPTS= |
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36 | export MAKEFILE=Makefile.gfortran |
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37 | ;; |
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38 | *cca*) |
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39 | module switch PrgEnv-cray PrgEnv-intel |
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40 | module load grib_api |
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41 | module load emos |
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42 | module load python |
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43 | echo ${GROUP} |
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44 | echo ${HOME} |
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45 | echo $HOME | awk -F / '{print $1, $2, $3, $4}' |
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46 | export GROUP=`echo $HOME | awk -F / '{print $4}'` |
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47 | export SCRATCH=/scratch/ms/${GROUP}/${USER} |
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48 | export FLEXPART_ROOT_SCRIPTS= |
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49 | export MAKEFILE=Makefile.CRAY |
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50 | ;; |
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51 | esac |
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52 | |
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53 | mkdir -p $FLEXPART_ROOT_SCRIPTS/flex_extract_v$VERSION |
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54 | cd $FLEXPART_ROOT_SCRIPTS/flex_extract_v$VERSION # if FLEXPART_ROOT is not set this means cd to the home directory |
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55 | tar -xvf $HOME/flex_extract_v$VERSION.tar |
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56 | cd src |
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57 | \rm *.o *.mod CONVERT2 |
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58 | make -f $MAKEFILE >flexcompile 2>flexcompile |
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59 | |
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60 | ls -l CONVERT2 >>flexcompile |
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61 | if [ $? -eq 0 ]; then |
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62 | echo 'SUCCESS!' >>flexcompile |
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63 | mail -s flexcompile.$HOST.$$ $USER <flexcompile |
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64 | else |
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65 | echo Environment: >>flexcompile |
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66 | env >> flexcompile |
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67 | mail -s "ERROR! flexcompile.$HOST.$$" $USER <flexcompile |
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68 | fi |
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