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30 | <h3>Navigation</h3> |
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31 | <ul> |
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32 | <li class="right" style="margin-right: 10px"> |
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33 | <a href="genindex.html" title="General Index" |
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34 | accesskey="I">index</a></li> |
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35 | <li class="right" > |
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36 | <a href="py-modindex.html" title="Python Module Index" |
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37 | >modules</a> |</li> |
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41 | <li class="nav-item nav-item-0"><a href="index.html">flex_extract_test 7.1 documentation</a> »</li> |
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42 | </ul> |
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43 | </div> |
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44 | |
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45 | <div class="document"> |
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46 | <div class="documentwrapper"> |
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47 | <div class="bodywrapper"> |
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48 | <div class="body" role="main"> |
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49 | |
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50 | <div class="section" id="module-Tools"> |
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51 | <span id="auto-generated-documentation"></span><h1>Auto Generated Documentation<a class="headerlink" href="#module-Tools" title="Permalink to this headline">¶</a></h1> |
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52 | <dl class="function"> |
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53 | <dt id="Tools.cleanup"> |
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54 | <code class="descclassname">Tools.</code><code class="descname">cleanup</code><span class="sig-paren">(</span><em>c</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#cleanup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.cleanup" title="Permalink to this definition">¶</a></dt> |
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55 | <dd><dl class="docutils"> |
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56 | <dt>@Description:</dt> |
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57 | <dd>Remove all files from intermediate directory |
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58 | (inputdir from control file).</dd> |
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59 | <dt>@Input:</dt> |
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60 | <dd><dl class="first last docutils"> |
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61 | <dt>c: instance of class Control</dt> |
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62 | <dd><p class="first">Contains all the parameters of control files, which are e.g.: |
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63 | DAY1(start_date), DAY2(end_date), DTIME, MAXSTEP, TYPE, TIME, |
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64 | STEP, CLASS(marsclass), STREAM, NUMBER, EXPVER, GRID, LEFT, |
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65 | LOWER, UPPER, RIGHT, LEVEL, LEVELIST, RESOL, GAUSS, ACCURACY, |
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66 | OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, SMOOTH, FORMAT, |
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67 | ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, ECFSDIR, |
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68 | MAILOPS, MAILFAIL, GRIB2FLEXPART, FLEXPARTDIR, BASETIME |
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69 | DATE_CHUNK, DEBUG, INPUTDIR, OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</p> |
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70 | <p class="last">For more information about format and content of the parameter |
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71 | see documentation.</p> |
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72 | </dd> |
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73 | </dl> |
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74 | </dd> |
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75 | <dt>@Return:</dt> |
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76 | <dd><nothing></dd> |
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77 | </dl> |
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78 | </dd></dl> |
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79 | |
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80 | <dl class="function"> |
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81 | <dt id="Tools.getListAsString"> |
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82 | <code class="descclassname">Tools.</code><code class="descname">getListAsString</code><span class="sig-paren">(</span><em>listobj</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#getListAsString"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.getListAsString" title="Permalink to this definition">¶</a></dt> |
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83 | <dd><p>@Description:</p> |
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84 | </dd></dl> |
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85 | |
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86 | <dl class="function"> |
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87 | <dt id="Tools.init128"> |
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88 | <code class="descclassname">Tools.</code><code class="descname">init128</code><span class="sig-paren">(</span><em>fn</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#init128"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.init128" title="Permalink to this definition">¶</a></dt> |
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89 | <dd><dl class="docutils"> |
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90 | <dt>@Description:</dt> |
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91 | <dd>Opens and reads the grib file with table 128 information.</dd> |
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92 | <dt>@Input:</dt> |
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93 | <dd><dl class="first last docutils"> |
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94 | <dt>fn: string</dt> |
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95 | <dd>Path to file of ECMWF grib table number 128.</dd> |
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96 | </dl> |
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97 | </dd> |
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98 | <dt>@Return:</dt> |
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99 | <dd><dl class="first last docutils"> |
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100 | <dt>table128: dictionary</dt> |
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101 | <dd>Contains the ECMWF grib table 128 information. |
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102 | The key is the parameter number and the value is the |
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103 | short name of the parameter.</dd> |
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104 | </dl> |
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105 | </dd> |
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106 | </dl> |
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107 | </dd></dl> |
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108 | |
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109 | <dl class="function"> |
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110 | <dt id="Tools.interpret_args_and_control"> |
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111 | <code class="descclassname">Tools.</code><code class="descname">interpret_args_and_control</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#interpret_args_and_control"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.interpret_args_and_control" title="Permalink to this definition">¶</a></dt> |
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112 | <dd><dl class="docutils"> |
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113 | <dt>@Description:</dt> |
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114 | <dd>Assigns the command line arguments and reads control file |
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115 | content. Apply default values for non mentioned arguments.</dd> |
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116 | <dt>@Input:</dt> |
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117 | <dd><nothing></dd> |
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118 | <dt>@Return:</dt> |
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119 | <dd><dl class="first last docutils"> |
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120 | <dt>args: instance of ArgumentParser</dt> |
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121 | <dd>Contains the commandline arguments from script/program call.</dd> |
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122 | <dt>c: instance of class Control</dt> |
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123 | <dd>Contains all necessary information of a control file. The parameters |
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124 | are: DAY1, DAY2, DTIME, MAXSTEP, TYPE, TIME, STEP, CLASS, STREAM, |
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125 | NUMBER, EXPVER, GRID, LEFT, LOWER, UPPER, RIGHT, LEVEL, LEVELIST, |
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126 | RESOL, GAUSS, ACCURACY, OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, |
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127 | SMOOTH, FORMAT, ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, |
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128 | ECFSDIR, MAILOPS, MAILFAIL, GRIB2FLEXPART, DEBUG, INPUTDIR, |
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129 | OUTPUTDIR, FLEXPART_ROOT_SCRIPTS |
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130 | For more information about format and content of the parameter see |
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131 | documentation.</dd> |
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132 | </dl> |
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133 | </dd> |
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134 | </dl> |
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135 | </dd></dl> |
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136 | |
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137 | <dl class="function"> |
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138 | <dt id="Tools.myerror"> |
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139 | <code class="descclassname">Tools.</code><code class="descname">myerror</code><span class="sig-paren">(</span><em>c</em>, <em>message='ERROR'</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#myerror"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.myerror" title="Permalink to this definition">¶</a></dt> |
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140 | <dd><dl class="docutils"> |
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141 | <dt>@Description:</dt> |
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142 | <dd>Prints a specified error message which can be passed to the function |
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143 | before exiting the program.</dd> |
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144 | <dt>@Input:</dt> |
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145 | <dd><dl class="first last docutils"> |
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146 | <dt>c: instance of class Control</dt> |
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147 | <dd><p class="first">Contains all the parameters of control files, which are e.g.: |
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148 | DAY1(start_date), DAY2(end_date), DTIME, MAXSTEP, TYPE, TIME, |
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149 | STEP, CLASS(marsclass), STREAM, NUMBER, EXPVER, GRID, LEFT, |
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150 | LOWER, UPPER, RIGHT, LEVEL, LEVELIST, RESOL, GAUSS, ACCURACY, |
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151 | OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, SMOOTH, FORMAT, |
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152 | ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, ECFSDIR, |
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153 | MAILOPS, MAILFAIL, GRIB2FLEXPART, FLEXPARTDIR, BASETIME |
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154 | DATE_CHUNK, DEBUG, INPUTDIR, OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</p> |
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155 | <p class="last">For more information about format and content of the parameter |
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156 | see documentation.</p> |
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157 | </dd> |
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158 | <dt>message: string, optional</dt> |
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159 | <dd>Error message. Default value is “ERROR”.</dd> |
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160 | </dl> |
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161 | </dd> |
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162 | <dt>@Return:</dt> |
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163 | <dd><nothing></dd> |
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164 | </dl> |
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165 | </dd></dl> |
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166 | |
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167 | <dl class="function"> |
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168 | <dt id="Tools.normalexit"> |
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169 | <code class="descclassname">Tools.</code><code class="descname">normalexit</code><span class="sig-paren">(</span><em>c</em>, <em>message='Done!'</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#normalexit"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.normalexit" title="Permalink to this definition">¶</a></dt> |
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170 | <dd><dl class="docutils"> |
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171 | <dt>@Description:</dt> |
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172 | <dd>Prints a specific exit message which can be passed to the function.</dd> |
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173 | <dt>@Input:</dt> |
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174 | <dd><dl class="first last docutils"> |
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175 | <dt>c: instance of class Control</dt> |
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176 | <dd><p class="first">Contains all the parameters of control files, which are e.g.: |
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177 | DAY1(start_date), DAY2(end_date), DTIME, MAXSTEP, TYPE, TIME, |
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178 | STEP, CLASS(marsclass), STREAM, NUMBER, EXPVER, GRID, LEFT, |
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179 | LOWER, UPPER, RIGHT, LEVEL, LEVELIST, RESOL, GAUSS, ACCURACY, |
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180 | OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, SMOOTH, FORMAT, |
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181 | ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, ECFSDIR, |
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182 | MAILOPS, MAILFAIL, GRIB2FLEXPART, FLEXPARTDIR, BASETIME |
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183 | DATE_CHUNK, DEBUG, INPUTDIR, OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</p> |
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184 | <p class="last">For more information about format and content of the parameter |
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185 | see documentation.</p> |
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186 | </dd> |
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187 | <dt>message: string, optional</dt> |
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188 | <dd>Message for exiting program. Default value is “Done!”.</dd> |
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189 | </dl> |
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190 | </dd> |
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191 | <dt>@Return:</dt> |
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192 | <dd><nothing></dd> |
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193 | </dl> |
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194 | </dd></dl> |
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195 | |
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196 | <dl class="function"> |
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197 | <dt id="Tools.product"> |
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198 | <code class="descclassname">Tools.</code><code class="descname">product</code><span class="sig-paren">(</span><em>*args</em>, <em>**kwds</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#product"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.product" title="Permalink to this definition">¶</a></dt> |
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199 | <dd><dl class="docutils"> |
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200 | <dt>@Description:</dt> |
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201 | <dd><p class="first">This method is taken from an example at the ECMWF wiki website. |
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202 | <a class="reference external" href="https://software.ecmwf.int/wiki/display/GRIB/index.py">https://software.ecmwf.int/wiki/display/GRIB/index.py</a>; 2018-03-16</p> |
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203 | <p>This method combines the single characters of the passed arguments |
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204 | with each other. So that each character of each argument value |
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205 | will be combined with each character of the other arguments as a tuple.</p> |
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206 | <p class="last">Example: |
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207 | product(‘ABCD’, ‘xy’) –> Ax Ay Bx By Cx Cy Dx Dy |
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208 | product(range(2), repeat = 3) –> 000 001 010 011 100 101 110 111</p> |
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209 | </dd> |
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210 | <dt>@Input:</dt> |
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211 | <dd><dl class="first last docutils"> |
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212 | <dt><a href="#id1"><span class="problematic" id="id2">*</span></a>args: tuple</dt> |
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213 | <dd>Positional arguments (arbitrary number).</dd> |
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214 | <dt><a href="#id3"><span class="problematic" id="id4">**</span></a>kwds: dictionary</dt> |
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215 | <dd>Contains all the keyword arguments from <a href="#id5"><span class="problematic" id="id6">*</span></a>args.</dd> |
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216 | </dl> |
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217 | </dd> |
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218 | <dt>@Return:</dt> |
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219 | <dd><dl class="first last docutils"> |
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220 | <dt>prod: tuple</dt> |
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221 | <dd>Return will be done with “yield”. A tuple of combined arguments. |
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222 | See example in description above.</dd> |
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223 | </dl> |
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224 | </dd> |
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225 | </dl> |
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226 | </dd></dl> |
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227 | |
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228 | <dl class="function"> |
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229 | <dt id="Tools.silentremove"> |
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230 | <code class="descclassname">Tools.</code><code class="descname">silentremove</code><span class="sig-paren">(</span><em>filename</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#silentremove"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.silentremove" title="Permalink to this definition">¶</a></dt> |
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231 | <dd><dl class="docutils"> |
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232 | <dt>@Description:</dt> |
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233 | <dd>Removes the file which name is passed to the function if |
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234 | it exists. The function does not fail if the file does not |
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235 | exist.</dd> |
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236 | <dt>@Input:</dt> |
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237 | <dd><dl class="first last docutils"> |
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238 | <dt>filename: string</dt> |
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239 | <dd>The name of the file to be removed without notification.</dd> |
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240 | </dl> |
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241 | </dd> |
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242 | <dt>@Return:</dt> |
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243 | <dd><nothing></dd> |
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244 | </dl> |
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245 | </dd></dl> |
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246 | |
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247 | <dl class="function"> |
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248 | <dt id="Tools.toparamId"> |
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249 | <code class="descclassname">Tools.</code><code class="descname">toparamId</code><span class="sig-paren">(</span><em>pars</em>, <em>table</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/Tools.html#toparamId"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#Tools.toparamId" title="Permalink to this definition">¶</a></dt> |
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250 | <dd><dl class="docutils"> |
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251 | <dt>@Description:</dt> |
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252 | <dd>Transform parameter names to parameter ids |
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253 | with ECMWF grib table 128.</dd> |
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254 | <dt>@Input:</dt> |
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255 | <dd><dl class="first last docutils"> |
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256 | <dt>pars: string</dt> |
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257 | <dd>Addpar argument from control file in the format of |
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258 | parameter names instead of ids. The parameter short |
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259 | names are sepearted with “/” and they are passed as |
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260 | one single string.</dd> |
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261 | <dt>table: dictionary</dt> |
---|
262 | <dd>Contains the ECMWF grib table 128 information. |
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263 | The key is the parameter number and the value is the |
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264 | short name of the parameter.</dd> |
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265 | </dl> |
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266 | </dd> |
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267 | <dt>@Return:</dt> |
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268 | <dd><dl class="first last docutils"> |
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269 | <dt>ipar: list of integer</dt> |
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270 | <dd>List of addpar parameters from control file transformed to |
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271 | parameter ids in the format of integer.</dd> |
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272 | </dl> |
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273 | </dd> |
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274 | </dl> |
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275 | </dd></dl> |
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276 | |
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277 | <dl class="class"> |
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278 | <dt id="Tools.Control"> |
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279 | <em class="property">class </em><code class="descclassname">Tools.</code><code class="descname">Control</code><a class="headerlink" href="#Tools.Control" title="Permalink to this definition">¶</a></dt> |
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280 | <dd><p>@Author: Leopold Haimberger (University of Vienna)</p> |
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281 | <p>@Date: November 2015</p> |
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282 | <dl class="docutils"> |
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283 | <dt>@ChangeHistory:</dt> |
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284 | <dd><dl class="first last docutils"> |
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285 | <dt>February 2018 - Anne Philipp (University of Vienna):</dt> |
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286 | <dd><ul class="first last simple"> |
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287 | <li>applied PEP8 style guide</li> |
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288 | <li>added documentation</li> |
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289 | <li>applied some minor modifications in programming style/structure</li> |
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290 | <li>moved Control class in a file for its own</li> |
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291 | </ul> |
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292 | </dd> |
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293 | </dl> |
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294 | </dd> |
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295 | <dt>@License:</dt> |
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296 | <dd><ol class="first upperalpha simple" start="3"> |
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297 | <li>Copyright 2015-2018.</li> |
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298 | </ol> |
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299 | <p class="last">This software is licensed under the terms of the Apache Licence Version 2.0 |
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300 | which can be obtained at <a class="reference external" href="http://www.apache.org/licenses/LICENSE-2.0">http://www.apache.org/licenses/LICENSE-2.0</a>.</p> |
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301 | </dd> |
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302 | <dt>@Requirements:</dt> |
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303 | <dd>A standard python 2.6 or 2.7 installation</dd> |
---|
304 | <dt>@Description:</dt> |
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305 | <dd>The Control files are the steering part of the FLEXPART extraction |
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306 | software. All necessary parameters needed to retrieve the data fields |
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307 | from the MARS archive for driving FLEXPART are set in a Control file. |
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308 | Some specific parameters like the start and end dates can be overwritten |
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309 | by the command line parameters, but in generel all parameters needed |
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310 | for a complete set of fields for FLEXPART can be set in the Control files.</dd> |
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311 | </dl> |
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312 | <dl class="class"> |
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313 | <dt id="Tools.Control.Control"> |
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314 | <em class="property">class </em><code class="descname">Control</code><span class="sig-paren">(</span><em>filename</em><span class="sig-paren">)</span><a class="headerlink" href="#Tools.Control.Control" title="Permalink to this definition">¶</a></dt> |
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315 | <dd><p>Class containing the information of the ECMWFDATA control file.</p> |
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316 | <p>Contains all the parameters of control files, which are e.g.: |
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317 | DAY1(start_date), DAY2(end_date), DTIME, MAXSTEP, TYPE, TIME, |
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318 | STEP, CLASS(marsclass), STREAM, NUMBER, EXPVER, GRID, LEFT, |
---|
319 | LOWER, UPPER, RIGHT, LEVEL, LEVELIST, RESOL, GAUSS, ACCURACY, |
---|
320 | OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, SMOOTH, FORMAT, |
---|
321 | ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, ECFSDIR, |
---|
322 | MAILOPS, MAILFAIL, GRIB2FLEXPART, FLEXPARTDIR, |
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323 | BASETIME, DATE_CHUNK, DEBUG, INPUTDIR, OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</p> |
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324 | <p>For more information about format and content of the parameter |
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325 | see documentation.</p> |
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326 | <dl class="method"> |
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327 | <dt id="Tools.Control.Control.tolist"> |
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328 | <code class="descname">tolist</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#Tools.Control.Control.tolist" title="Permalink to this definition">¶</a></dt> |
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329 | <dd><dl class="docutils"> |
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330 | <dt>@Description:</dt> |
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331 | <dd>Just generates a list of strings containing the attributes and |
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332 | assigned values except the attributes “_expanded”, “exedir”, |
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333 | “ecmwfdatadir” and “flexpart_root_scripts”.</dd> |
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334 | <dt>@Input:</dt> |
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335 | <dd><dl class="first last docutils"> |
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336 | <dt>self: instance of Control class</dt> |
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337 | <dd>Description see class documentation.</dd> |
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338 | </dl> |
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339 | </dd> |
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340 | <dt>@Return:</dt> |
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341 | <dd><dl class="first last docutils"> |
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342 | <dt>l: list</dt> |
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343 | <dd>A sorted list of the all Control class attributes with |
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344 | their values except the attributes “_expanded”, “exedir”, |
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345 | “ecmwfdatadir” and “flexpart_root_scripts”.</dd> |
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346 | </dl> |
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347 | </dd> |
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348 | </dl> |
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349 | </dd></dl> |
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350 | |
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351 | </dd></dl> |
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352 | |
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353 | <dl class="attribute"> |
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354 | <dt id="Tools.Control.Tools"> |
---|
355 | <code class="descname">Tools</code><em class="property"> = <module 'Tools' from '/nas16/tmc/Anne/Interpolation/flexextract/flexextract/python/Tools.pyc'></em><a class="headerlink" href="#Tools.Control.Tools" title="Permalink to this definition">¶</a></dt> |
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356 | <dd></dd></dl> |
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357 | |
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