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| 37 | <li class="nav-item nav-item-0"><a href="../index.html">flex_extract_test 7.1 documentation</a> »</li> |
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| 38 | <li class="nav-item nav-item-1"><a href="index.html" accesskey="U">Module code</a> »</li> |
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| 46 | |
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| 47 | <h1>Source code for Tools</h1><div class="highlight"><pre> |
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| 48 | <span></span><span class="ch">#!/usr/bin/env python</span> |
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| 49 | <span class="c1"># -*- coding: utf-8 -*-</span> |
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| 50 | <span class="c1">#************************************************************************</span> |
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| 51 | <span class="c1"># TODO AP</span> |
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| 52 | <span class="c1">#AP</span> |
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| 53 | <span class="c1"># -</span> |
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| 54 | <span class="c1">#************************************************************************</span> |
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| 55 | <span class="sd">"""</span> |
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| 56 | |
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| 57 | <span class="sd">"""</span> |
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| 58 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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| 59 | <span class="c1"># MODULES</span> |
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| 60 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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| 61 | <span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span> |
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| 62 | <span class="kn">import</span> <span class="nn">os</span> |
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| 63 | <span class="kn">import</span> <span class="nn">errno</span> |
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| 64 | <span class="kn">import</span> <span class="nn">sys</span> |
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| 65 | <span class="kn">import</span> <span class="nn">glob</span> |
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| 66 | <span class="kn">from</span> <span class="nn">numpy</span> <span class="k">import</span> <span class="o">*</span> |
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| 67 | <span class="kn">from</span> <span class="nn">gribapi</span> <span class="k">import</span> <span class="o">*</span> |
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| 68 | <span class="kn">import</span> <span class="nn">Control</span> |
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| 69 | |
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| 70 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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| 71 | <span class="c1"># FUNCTIONS</span> |
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| 72 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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| 73 | |
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| 74 | <div class="viewcode-block" id="interpret_args_and_control"><a class="viewcode-back" href="../code.html#Tools.interpret_args_and_control">[docs]</a><span class="k">def</span> <span class="nf">interpret_args_and_control</span><span class="p">():</span> |
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| 75 | <span class="sd">'''</span> |
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| 76 | <span class="sd"> @Description:</span> |
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| 77 | <span class="sd"> Assigns the command line arguments and reads control file</span> |
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| 78 | <span class="sd"> content. Apply default values for non mentioned arguments.</span> |
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| 79 | |
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| 80 | <span class="sd"> @Input:</span> |
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| 81 | <span class="sd"> <nothing></span> |
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| 82 | |
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| 83 | <span class="sd"> @Return:</span> |
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| 84 | <span class="sd"> args: instance of ArgumentParser</span> |
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| 85 | <span class="sd"> Contains the commandline arguments from script/program call.</span> |
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| 86 | |
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| 87 | <span class="sd"> c: instance of class Control</span> |
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| 88 | <span class="sd"> Contains all necessary information of a control file. The parameters</span> |
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| 89 | <span class="sd"> are: DAY1, DAY2, DTIME, MAXSTEP, TYPE, TIME, STEP, CLASS, STREAM,</span> |
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| 90 | <span class="sd"> NUMBER, EXPVER, GRID, LEFT, LOWER, UPPER, RIGHT, LEVEL, LEVELIST,</span> |
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| 91 | <span class="sd"> RESOL, GAUSS, ACCURACY, OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA,</span> |
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| 92 | <span class="sd"> SMOOTH, FORMAT, ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS,</span> |
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| 93 | <span class="sd"> ECFSDIR, MAILOPS, MAILFAIL, GRIB2FLEXPART, DEBUG, INPUTDIR,</span> |
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| 94 | <span class="sd"> OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</span> |
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| 95 | <span class="sd"> For more information about format and content of the parameter see</span> |
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| 96 | <span class="sd"> documentation.</span> |
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| 97 | |
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| 98 | <span class="sd"> '''</span> |
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| 99 | <span class="n">parser</span> <span class="o">=</span> <span class="n">ArgumentParser</span><span class="p">(</span><span class="n">description</span><span class="o">=</span><span class="s1">'Retrieve FLEXPART input from </span><span class="se">\</span> |
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| 100 | <span class="s1"> ECMWF MARS archive'</span><span class="p">,</span> |
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| 101 | <span class="n">formatter_class</span><span class="o">=</span><span class="n">ArgumentDefaultsHelpFormatter</span><span class="p">)</span> |
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| 102 | |
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| 103 | <span class="c1"># the most important arguments</span> |
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| 104 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--start_date"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"start_date"</span><span class="p">,</span> |
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| 105 | <span class="n">help</span><span class="o">=</span><span class="s2">"start date YYYYMMDD"</span><span class="p">)</span> |
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| 106 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--end_date"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"end_date"</span><span class="p">,</span> |
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| 107 | <span class="n">help</span><span class="o">=</span><span class="s2">"end_date YYYYMMDD"</span><span class="p">)</span> |
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| 108 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--date_chunk"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"date_chunk"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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| 109 | <span class="n">help</span><span class="o">=</span><span class="s2">"# of days to be retrieved at once"</span><span class="p">)</span> |
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| 110 | |
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| 111 | <span class="c1"># some arguments that override the default in the control file</span> |
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| 112 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--basetime"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"basetime"</span><span class="p">,</span> |
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| 113 | <span class="n">help</span><span class="o">=</span><span class="s2">"base such as 00/12 (for half day retrievals)"</span><span class="p">)</span> |
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| 114 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--step"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"step"</span><span class="p">,</span> |
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| 115 | <span class="n">help</span><span class="o">=</span><span class="s2">"steps such as 00/to/48"</span><span class="p">)</span> |
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| 116 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--levelist"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"levelist"</span><span class="p">,</span> |
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| 117 | <span class="n">help</span><span class="o">=</span><span class="s2">"Vertical levels to be retrieved, e.g. 30/to/60"</span><span class="p">)</span> |
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| 118 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--area"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"area"</span><span class="p">,</span> |
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| 119 | <span class="n">help</span><span class="o">=</span><span class="s2">"area defined as north/west/south/east"</span><span class="p">)</span> |
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| 120 | |
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| 121 | <span class="c1"># set the working directories</span> |
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| 122 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--inputdir"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"inputdir"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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| 123 | <span class="n">help</span><span class="o">=</span><span class="s2">"root directory for storing intermediate files"</span><span class="p">)</span> |
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| 124 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--outputdir"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"outputdir"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> |
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| 125 | <span class="n">help</span><span class="o">=</span><span class="s2">"root directory for storing output files"</span><span class="p">)</span> |
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| 126 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--flexpart_root_scripts"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"flexpart_root_scripts"</span><span class="p">,</span> |
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| 127 | <span class="n">help</span><span class="o">=</span><span class="s2">"FLEXPART root directory (to find grib2flexpart </span><span class="se">\</span> |
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| 128 | <span class="s2"> and COMMAND file)</span><span class="se">\n</span><span class="s2">\ Normally ECMWFDATA resides in </span><span class="se">\</span> |
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| 129 | <span class="s2"> the scripts directory of the FLEXPART distribution"</span><span class="p">)</span> |
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| 130 | |
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| 131 | <span class="c1"># this is only used by prepareFLEXPART.py to rerun a postprocessing step</span> |
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| 132 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--ppid"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"ppid"</span><span class="p">,</span> |
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| 133 | <span class="n">help</span><span class="o">=</span><span class="s2">"Specify parent process id for </span><span class="se">\</span> |
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| 134 | <span class="s2"> rerun of prepareFLEXPART"</span><span class="p">)</span> |
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| 135 | |
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| 136 | <span class="c1"># arguments for job submission to ECMWF, only needed by submit.py</span> |
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| 137 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--job_template"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s1">'job_template'</span><span class="p">,</span> |
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| 138 | <span class="n">default</span><span class="o">=</span><span class="s2">"job.temp"</span><span class="p">,</span> |
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| 139 | <span class="n">help</span><span class="o">=</span><span class="s2">"job template file for submission to ECMWF"</span><span class="p">)</span> |
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| 140 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--queue"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"queue"</span><span class="p">,</span> |
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| 141 | <span class="n">help</span><span class="o">=</span><span class="s2">"queue for submission to ECMWF </span><span class="se">\</span> |
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| 142 | <span class="s2"> (e.g. ecgate or cca )"</span><span class="p">)</span> |
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| 143 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--controlfile"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"controlfile"</span><span class="p">,</span> |
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| 144 | <span class="n">default</span><span class="o">=</span><span class="s1">'CONTROL.temp'</span><span class="p">,</span> |
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| 145 | <span class="n">help</span><span class="o">=</span><span class="s2">"file with control parameters"</span><span class="p">)</span> |
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| 146 | <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"--debug"</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">"debug"</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> |
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| 147 | <span class="n">help</span><span class="o">=</span><span class="s2">"Debug mode - leave temporary files intact"</span><span class="p">)</span> |
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| 148 | |
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| 149 | <span class="n">args</span> <span class="o">=</span> <span class="n">parser</span><span class="o">.</span><span class="n">parse_args</span><span class="p">()</span> |
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| 150 | |
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| 151 | <span class="c1"># create instance of Control for specified controlfile</span> |
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| 152 | <span class="c1"># and assign the parameters (and default values if necessary)</span> |
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| 153 | <span class="k">try</span><span class="p">:</span> |
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| 154 | <span class="n">c</span> <span class="o">=</span> <span class="n">Control</span><span class="o">.</span><span class="n">Control</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">controlfile</span><span class="p">)</span> |
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| 155 | <span class="k">except</span> <span class="ne">IOError</span><span class="p">:</span> |
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| 156 | <span class="k">try</span><span class="p">:</span> |
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| 157 | <span class="n">c</span> <span class="o">=</span> <span class="n">Control</span><span class="o">.</span><span class="n">Control</span><span class="p">(</span><span class="n">localpythonpath</span> <span class="o">+</span> <span class="n">args</span><span class="o">.</span><span class="n">controlfile</span><span class="p">)</span> |
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| 158 | <span class="k">except</span><span class="p">:</span> |
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| 159 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Could not read control file "'</span> <span class="o">+</span> <span class="n">args</span><span class="o">.</span><span class="n">controlfile</span> <span class="o">+</span> <span class="s1">'"'</span><span class="p">)</span> |
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| 160 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Either it does not exist or its syntax is wrong.'</span><span class="p">)</span> |
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| 161 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Try "'</span> <span class="o">+</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> |
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| 162 | <span class="s1">' -h" to print usage information'</span><span class="p">)</span> |
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| 163 | <span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> |
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| 164 | |
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| 165 | <span class="c1"># check for having at least a starting date</span> |
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| 166 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">start_date</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">c</span><span class="p">,</span> <span class="s1">'start_date'</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
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| 167 | <span class="nb">print</span><span class="p">(</span><span class="s1">'start_date specified neither in command line nor </span><span class="se">\</span> |
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| 168 | <span class="s1"> in control file '</span> <span class="o">+</span> <span class="n">args</span><span class="o">.</span><span class="n">controlfile</span><span class="p">)</span> |
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| 169 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Try "'</span> <span class="o">+</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> |
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| 170 | <span class="s1">' -h" to print usage information'</span><span class="p">)</span> |
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| 171 | <span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> |
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| 172 | |
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| 173 | <span class="c1"># save all existing command line parameter to the Control instance</span> |
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| 174 | <span class="c1"># if parameter is not specified through the command line or CONTROL file</span> |
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| 175 | <span class="c1"># set default values</span> |
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| 176 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">start_date</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
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| 177 | <span class="n">c</span><span class="o">.</span><span class="n">start_date</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">start_date</span> |
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| 178 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">end_date</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
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| 179 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">end_date</span> |
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| 180 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
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| 181 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">start_date</span> |
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| 182 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">date_chunk</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
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| 183 | <span class="n">c</span><span class="o">.</span><span class="n">date_chunk</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">date_chunk</span> |
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| 184 | |
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| 185 | <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">c</span><span class="p">,</span> <span class="s1">'debug'</span><span class="p">):</span> |
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| 186 | <span class="n">c</span><span class="o">.</span><span class="n">debug</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">debug</span> |
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| 187 | |
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| 188 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">inputdir</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 189 | <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">=</span> <span class="s1">'../work'</span> |
---|
| 190 | <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span> <span class="o">=</span> <span class="s1">'../work'</span> |
---|
| 191 | <span class="k">else</span><span class="p">:</span> |
---|
| 192 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">inputdir</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 193 | <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">inputdir</span> |
---|
| 194 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 195 | <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">inputdir</span> |
---|
| 196 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 197 | <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> |
---|
| 198 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">inputdir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 199 | <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> |
---|
| 200 | |
---|
| 201 | <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">c</span><span class="p">,</span> <span class="s1">'outputdir'</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span> <span class="ow">and</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 202 | <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> |
---|
| 203 | <span class="k">else</span><span class="p">:</span> |
---|
| 204 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 205 | <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">outputdir</span> |
---|
| 206 | |
---|
| 207 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">area</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 208 | <span class="n">afloat</span> <span class="o">=</span> <span class="s1">'.'</span> <span class="ow">in</span> <span class="n">args</span><span class="o">.</span><span class="n">area</span> |
---|
| 209 | <span class="n">l</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">area</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span> |
---|
| 210 | <span class="k">if</span> <span class="n">afloat</span><span class="p">:</span> |
---|
| 211 | <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">l</span><span class="p">)):</span> |
---|
| 212 | <span class="n">l</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">l</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="mi">1000</span><span class="p">))</span> |
---|
| 213 | <span class="n">c</span><span class="o">.</span><span class="n">upper</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">left</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">lower</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">right</span> <span class="o">=</span> <span class="n">l</span> |
---|
| 214 | |
---|
| 215 | <span class="c1"># NOTE: basetime activates the ''operational mode''</span> |
---|
| 216 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">basetime</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 217 | <span class="n">c</span><span class="o">.</span><span class="n">basetime</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">basetime</span> |
---|
| 218 | |
---|
| 219 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">step</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 220 | <span class="n">l</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">step</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span> |
---|
| 221 | <span class="k">if</span> <span class="s1">'to'</span> <span class="ow">in</span> <span class="n">args</span><span class="o">.</span><span class="n">step</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span> |
---|
| 222 | <span class="k">if</span> <span class="s1">'by'</span> <span class="ow">in</span> <span class="n">args</span><span class="o">.</span><span class="n">step</span><span class="o">.</span><span class="n">lower</span><span class="p">():</span> |
---|
| 223 | <span class="n">ilist</span> <span class="o">=</span> <span class="n">arange</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">l</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="nb">int</span><span class="p">(</span><span class="n">l</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">l</span><span class="p">[</span><span class="mi">4</span><span class="p">]))</span> |
---|
| 224 | <span class="n">c</span><span class="o">.</span><span class="n">step</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'</span><span class="si">{:0>3}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">ilist</span><span class="p">]</span> |
---|
| 225 | <span class="k">else</span><span class="p">:</span> |
---|
| 226 | <span class="n">myerror</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">args</span><span class="o">.</span><span class="n">step</span> <span class="o">+</span> <span class="s1">':</span><span class="se">\n</span><span class="s1">'</span> <span class="o">+</span> |
---|
| 227 | <span class="s1">'please use "by" as well if "to" is used'</span><span class="p">)</span> |
---|
| 228 | <span class="k">else</span><span class="p">:</span> |
---|
| 229 | <span class="n">c</span><span class="o">.</span><span class="n">step</span> <span class="o">=</span> <span class="n">l</span> |
---|
| 230 | |
---|
| 231 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">levelist</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 232 | <span class="n">c</span><span class="o">.</span><span class="n">levelist</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">levelist</span> |
---|
| 233 | <span class="k">if</span> <span class="s1">'to'</span> <span class="ow">in</span> <span class="n">c</span><span class="o">.</span><span class="n">levelist</span><span class="p">:</span> |
---|
| 234 | <span class="n">c</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">levelist</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="mi">2</span><span class="p">]</span> |
---|
| 235 | <span class="k">else</span><span class="p">:</span> |
---|
| 236 | <span class="n">c</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">levelist</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> |
---|
| 237 | |
---|
| 238 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">flexpart_root_scripts</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span> |
---|
| 239 | <span class="n">c</span><span class="o">.</span><span class="n">flexpart_root_scripts</span> <span class="o">=</span> <span class="n">args</span><span class="o">.</span><span class="n">flexpart_root_scripts</span> |
---|
| 240 | |
---|
| 241 | <span class="k">return</span> <span class="n">args</span><span class="p">,</span> <span class="n">c</span></div> |
---|
| 242 | |
---|
| 243 | |
---|
| 244 | <div class="viewcode-block" id="cleanup"><a class="viewcode-back" href="../code.html#Tools.cleanup">[docs]</a><span class="k">def</span> <span class="nf">cleanup</span><span class="p">(</span><span class="n">c</span><span class="p">):</span> |
---|
| 245 | <span class="sd">'''</span> |
---|
| 246 | <span class="sd"> @Description:</span> |
---|
| 247 | <span class="sd"> Remove all files from intermediate directory</span> |
---|
| 248 | <span class="sd"> (inputdir from control file).</span> |
---|
| 249 | |
---|
| 250 | <span class="sd"> @Input:</span> |
---|
| 251 | <span class="sd"> c: instance of class Control</span> |
---|
| 252 | <span class="sd"> Contains all the parameters of control files, which are e.g.:</span> |
---|
| 253 | <span class="sd"> DAY1(start_date), DAY2(end_date), DTIME, MAXSTEP, TYPE, TIME,</span> |
---|
| 254 | <span class="sd"> STEP, CLASS(marsclass), STREAM, NUMBER, EXPVER, GRID, LEFT,</span> |
---|
| 255 | <span class="sd"> LOWER, UPPER, RIGHT, LEVEL, LEVELIST, RESOL, GAUSS, ACCURACY,</span> |
---|
| 256 | <span class="sd"> OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, SMOOTH, FORMAT,</span> |
---|
| 257 | <span class="sd"> ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, ECFSDIR,</span> |
---|
| 258 | <span class="sd"> MAILOPS, MAILFAIL, GRIB2FLEXPART, FLEXPARTDIR, BASETIME</span> |
---|
| 259 | <span class="sd"> DATE_CHUNK, DEBUG, INPUTDIR, OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</span> |
---|
| 260 | |
---|
| 261 | <span class="sd"> For more information about format and content of the parameter</span> |
---|
| 262 | <span class="sd"> see documentation.</span> |
---|
| 263 | |
---|
| 264 | <span class="sd"> @Return:</span> |
---|
| 265 | <span class="sd"> <nothing></span> |
---|
| 266 | <span class="sd"> '''</span> |
---|
| 267 | |
---|
| 268 | <span class="nb">print</span><span class="p">(</span><span class="s2">"cleanup"</span><span class="p">)</span> |
---|
| 269 | |
---|
| 270 | <span class="n">cleanlist</span> <span class="o">=</span> <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">+</span> <span class="s2">"/*"</span><span class="p">)</span> |
---|
| 271 | <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">cleanlist</span><span class="p">:</span> |
---|
| 272 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">prefix</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">cl</span><span class="p">:</span> |
---|
| 273 | <span class="n">silentremove</span><span class="p">(</span><span class="n">cl</span><span class="p">)</span> |
---|
| 274 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">ecapi</span> <span class="ow">is</span> <span class="kc">False</span> <span class="ow">and</span> <span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ectrans</span> <span class="o">==</span> <span class="s1">'1'</span> <span class="ow">or</span> <span class="n">c</span><span class="o">.</span><span class="n">ecstorage</span> <span class="o">==</span> <span class="s1">'1'</span><span class="p">):</span> |
---|
| 275 | <span class="n">silentremove</span><span class="p">(</span><span class="n">cl</span><span class="p">)</span> |
---|
| 276 | |
---|
| 277 | <span class="nb">print</span><span class="p">(</span><span class="s2">"Done"</span><span class="p">)</span> |
---|
| 278 | |
---|
| 279 | <span class="k">return</span></div> |
---|
| 280 | |
---|
| 281 | |
---|
| 282 | <div class="viewcode-block" id="myerror"><a class="viewcode-back" href="../code.html#Tools.myerror">[docs]</a><span class="k">def</span> <span class="nf">myerror</span><span class="p">(</span><span class="n">c</span><span class="p">,</span> <span class="n">message</span><span class="o">=</span><span class="s1">'ERROR'</span><span class="p">):</span> |
---|
| 283 | <span class="sd">'''</span> |
---|
| 284 | <span class="sd"> @Description:</span> |
---|
| 285 | <span class="sd"> Prints a specified error message which can be passed to the function</span> |
---|
| 286 | <span class="sd"> before exiting the program.</span> |
---|
| 287 | |
---|
| 288 | <span class="sd"> @Input:</span> |
---|
| 289 | <span class="sd"> c: instance of class Control</span> |
---|
| 290 | <span class="sd"> Contains all the parameters of control files, which are e.g.:</span> |
---|
| 291 | <span class="sd"> DAY1(start_date), DAY2(end_date), DTIME, MAXSTEP, TYPE, TIME,</span> |
---|
| 292 | <span class="sd"> STEP, CLASS(marsclass), STREAM, NUMBER, EXPVER, GRID, LEFT,</span> |
---|
| 293 | <span class="sd"> LOWER, UPPER, RIGHT, LEVEL, LEVELIST, RESOL, GAUSS, ACCURACY,</span> |
---|
| 294 | <span class="sd"> OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, SMOOTH, FORMAT,</span> |
---|
| 295 | <span class="sd"> ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, ECFSDIR,</span> |
---|
| 296 | <span class="sd"> MAILOPS, MAILFAIL, GRIB2FLEXPART, FLEXPARTDIR, BASETIME</span> |
---|
| 297 | <span class="sd"> DATE_CHUNK, DEBUG, INPUTDIR, OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</span> |
---|
| 298 | |
---|
| 299 | <span class="sd"> For more information about format and content of the parameter</span> |
---|
| 300 | <span class="sd"> see documentation.</span> |
---|
| 301 | |
---|
| 302 | <span class="sd"> message: string, optional</span> |
---|
| 303 | <span class="sd"> Error message. Default value is "ERROR".</span> |
---|
| 304 | |
---|
| 305 | <span class="sd"> @Return:</span> |
---|
| 306 | <span class="sd"> <nothing></span> |
---|
| 307 | <span class="sd"> '''</span> |
---|
| 308 | <span class="c1"># uncomment if user wants email notification directly from python</span> |
---|
| 309 | <span class="c1">#try:</span> |
---|
| 310 | <span class="c1">#target = c.mailfail</span> |
---|
| 311 | <span class="c1">#except AttributeError:</span> |
---|
| 312 | <span class="c1">#target = os.getenv('USER')</span> |
---|
| 313 | |
---|
| 314 | <span class="c1">#if(type(target) is not list):</span> |
---|
| 315 | <span class="c1">#target = [target]</span> |
---|
| 316 | |
---|
| 317 | <span class="nb">print</span><span class="p">(</span><span class="n">message</span><span class="p">)</span> |
---|
| 318 | |
---|
| 319 | <span class="c1"># uncomment if user wants email notification directly from python</span> |
---|
| 320 | <span class="c1">#for t in target:</span> |
---|
| 321 | <span class="c1">#p = subprocess.Popen(['mail','-s ECMWFDATA v7.0 ERROR', os.path.expandvars(t)],</span> |
---|
| 322 | <span class="c1"># stdin = subprocess.PIPE, stdout = subprocess.PIPE,</span> |
---|
| 323 | <span class="c1"># stderr = subprocess.PIPE, bufsize = 1)</span> |
---|
| 324 | <span class="c1">#tr = '\n'.join(traceback.format_stack())</span> |
---|
| 325 | <span class="c1">#pout = p.communicate(input = message+'\n\n'+tr)[0]</span> |
---|
| 326 | <span class="c1">#print 'Email sent to '+os.path.expandvars(t) # +' '+pout.decode()</span> |
---|
| 327 | |
---|
| 328 | <span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span> |
---|
| 329 | |
---|
| 330 | <span class="k">return</span></div> |
---|
| 331 | |
---|
| 332 | |
---|
| 333 | <div class="viewcode-block" id="normalexit"><a class="viewcode-back" href="../code.html#Tools.normalexit">[docs]</a><span class="k">def</span> <span class="nf">normalexit</span><span class="p">(</span><span class="n">c</span><span class="p">,</span> <span class="n">message</span><span class="o">=</span><span class="s1">'Done!'</span><span class="p">):</span> |
---|
| 334 | <span class="sd">'''</span> |
---|
| 335 | <span class="sd"> @Description:</span> |
---|
| 336 | <span class="sd"> Prints a specific exit message which can be passed to the function.</span> |
---|
| 337 | |
---|
| 338 | <span class="sd"> @Input:</span> |
---|
| 339 | <span class="sd"> c: instance of class Control</span> |
---|
| 340 | <span class="sd"> Contains all the parameters of control files, which are e.g.:</span> |
---|
| 341 | <span class="sd"> DAY1(start_date), DAY2(end_date), DTIME, MAXSTEP, TYPE, TIME,</span> |
---|
| 342 | <span class="sd"> STEP, CLASS(marsclass), STREAM, NUMBER, EXPVER, GRID, LEFT,</span> |
---|
| 343 | <span class="sd"> LOWER, UPPER, RIGHT, LEVEL, LEVELIST, RESOL, GAUSS, ACCURACY,</span> |
---|
| 344 | <span class="sd"> OMEGA, OMEGADIFF, ETA, ETADIFF, DPDETA, SMOOTH, FORMAT,</span> |
---|
| 345 | <span class="sd"> ADDPAR, WRF, CWC, PREFIX, ECSTORAGE, ECTRANS, ECFSDIR,</span> |
---|
| 346 | <span class="sd"> MAILOPS, MAILFAIL, GRIB2FLEXPART, FLEXPARTDIR, BASETIME</span> |
---|
| 347 | <span class="sd"> DATE_CHUNK, DEBUG, INPUTDIR, OUTPUTDIR, FLEXPART_ROOT_SCRIPTS</span> |
---|
| 348 | |
---|
| 349 | <span class="sd"> For more information about format and content of the parameter</span> |
---|
| 350 | <span class="sd"> see documentation.</span> |
---|
| 351 | |
---|
| 352 | <span class="sd"> message: string, optional</span> |
---|
| 353 | <span class="sd"> Message for exiting program. Default value is "Done!".</span> |
---|
| 354 | |
---|
| 355 | <span class="sd"> @Return:</span> |
---|
| 356 | <span class="sd"> <nothing></span> |
---|
| 357 | |
---|
| 358 | <span class="sd"> '''</span> |
---|
| 359 | <span class="c1"># Uncomment if user wants notification directly from python</span> |
---|
| 360 | <span class="c1">#try:</span> |
---|
| 361 | <span class="c1">#target = c.mailops</span> |
---|
| 362 | <span class="c1">#if(type(target) is not list):</span> |
---|
| 363 | <span class="c1">#target = [target]</span> |
---|
| 364 | <span class="c1">#for t in target:</span> |
---|
| 365 | <span class="c1">#p = subprocess.Popen(['mail','-s ECMWFDATA v7.0 normal exit',</span> |
---|
| 366 | <span class="c1"># os.path.expandvars(t)],</span> |
---|
| 367 | <span class="c1"># stdin = subprocess.PIPE,</span> |
---|
| 368 | <span class="c1"># stdout = subprocess.PIPE,</span> |
---|
| 369 | <span class="c1"># stderr = subprocess.PIPE, bufsize = 1)</span> |
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| 370 | <span class="c1">#pout = p.communicate(input = message+'\n\n')[0]</span> |
---|
| 371 | <span class="c1">#print pout.decode()</span> |
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| 372 | <span class="c1">#except:</span> |
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| 373 | <span class="c1">#pass</span> |
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| 374 | |
---|
| 375 | <span class="nb">print</span><span class="p">(</span><span class="n">message</span><span class="p">)</span> |
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| 376 | |
---|
| 377 | <span class="k">return</span></div> |
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| 378 | |
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| 379 | |
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| 380 | <div class="viewcode-block" id="product"><a class="viewcode-back" href="../code.html#Tools.product">[docs]</a><span class="k">def</span> <span class="nf">product</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwds</span><span class="p">):</span> |
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| 381 | <span class="sd">'''</span> |
---|
| 382 | <span class="sd"> @Description:</span> |
---|
| 383 | <span class="sd"> This method is taken from an example at the ECMWF wiki website.</span> |
---|
| 384 | <span class="sd"> https://software.ecmwf.int/wiki/display/GRIB/index.py; 2018-03-16</span> |
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| 385 | |
---|
| 386 | <span class="sd"> This method combines the single characters of the passed arguments</span> |
---|
| 387 | <span class="sd"> with each other. So that each character of each argument value</span> |
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| 388 | <span class="sd"> will be combined with each character of the other arguments as a tuple.</span> |
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| 389 | |
---|
| 390 | <span class="sd"> Example:</span> |
---|
| 391 | <span class="sd"> product('ABCD', 'xy') --> Ax Ay Bx By Cx Cy Dx Dy</span> |
---|
| 392 | <span class="sd"> product(range(2), repeat = 3) --> 000 001 010 011 100 101 110 111</span> |
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| 393 | |
---|
| 394 | <span class="sd"> @Input:</span> |
---|
| 395 | <span class="sd"> *args: tuple</span> |
---|
| 396 | <span class="sd"> Positional arguments (arbitrary number).</span> |
---|
| 397 | |
---|
| 398 | <span class="sd"> **kwds: dictionary</span> |
---|
| 399 | <span class="sd"> Contains all the keyword arguments from *args.</span> |
---|
| 400 | |
---|
| 401 | <span class="sd"> @Return:</span> |
---|
| 402 | <span class="sd"> prod: tuple</span> |
---|
| 403 | <span class="sd"> Return will be done with "yield". A tuple of combined arguments.</span> |
---|
| 404 | <span class="sd"> See example in description above.</span> |
---|
| 405 | <span class="sd"> '''</span> |
---|
| 406 | |
---|
| 407 | <span class="n">pools</span> <span class="o">=</span> <span class="nb">map</span><span class="p">(</span><span class="nb">tuple</span><span class="p">,</span> <span class="n">args</span><span class="p">)</span> <span class="o">*</span> <span class="n">kwds</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'repeat'</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> |
---|
| 408 | <span class="n">result</span> <span class="o">=</span> <span class="p">[[]]</span> |
---|
| 409 | <span class="k">for</span> <span class="n">pool</span> <span class="ow">in</span> <span class="n">pools</span><span class="p">:</span> |
---|
| 410 | <span class="n">result</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="o">+</span> <span class="p">[</span><span class="n">y</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">result</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">pool</span><span class="p">]</span> |
---|
| 411 | <span class="k">for</span> <span class="n">prod</span> <span class="ow">in</span> <span class="n">result</span><span class="p">:</span> |
---|
| 412 | <span class="k">yield</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">prod</span><span class="p">)</span> |
---|
| 413 | |
---|
| 414 | <span class="k">return</span></div> |
---|
| 415 | |
---|
| 416 | |
---|
| 417 | <div class="viewcode-block" id="silentremove"><a class="viewcode-back" href="../code.html#Tools.silentremove">[docs]</a><span class="k">def</span> <span class="nf">silentremove</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span> |
---|
| 418 | <span class="sd">'''</span> |
---|
| 419 | <span class="sd"> @Description:</span> |
---|
| 420 | <span class="sd"> Removes the file which name is passed to the function if</span> |
---|
| 421 | <span class="sd"> it exists. The function does not fail if the file does not</span> |
---|
| 422 | <span class="sd"> exist.</span> |
---|
| 423 | |
---|
| 424 | <span class="sd"> @Input:</span> |
---|
| 425 | <span class="sd"> filename: string</span> |
---|
| 426 | <span class="sd"> The name of the file to be removed without notification.</span> |
---|
| 427 | |
---|
| 428 | <span class="sd"> @Return:</span> |
---|
| 429 | <span class="sd"> <nothing></span> |
---|
| 430 | <span class="sd"> '''</span> |
---|
| 431 | <span class="k">try</span><span class="p">:</span> |
---|
| 432 | <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span> |
---|
| 433 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
| 434 | <span class="c1"># this would be "except OSError, e:" before Python 2.6</span> |
---|
| 435 | <span class="k">if</span> <span class="n">e</span><span class="o">.</span><span class="n">errno</span> <span class="ow">is</span> <span class="ow">not</span> <span class="n">errno</span><span class="o">.</span><span class="n">ENOENT</span><span class="p">:</span> |
---|
| 436 | <span class="c1"># errno.ENOENT = no such file or directory</span> |
---|
| 437 | <span class="k">raise</span> <span class="c1"># re-raise exception if a different error occured</span> |
---|
| 438 | |
---|
| 439 | <span class="k">return</span></div> |
---|
| 440 | |
---|
| 441 | |
---|
| 442 | <div class="viewcode-block" id="init128"><a class="viewcode-back" href="../code.html#Tools.init128">[docs]</a><span class="k">def</span> <span class="nf">init128</span><span class="p">(</span><span class="n">fn</span><span class="p">):</span> |
---|
| 443 | <span class="sd">'''</span> |
---|
| 444 | <span class="sd"> @Description:</span> |
---|
| 445 | <span class="sd"> Opens and reads the grib file with table 128 information.</span> |
---|
| 446 | |
---|
| 447 | <span class="sd"> @Input:</span> |
---|
| 448 | <span class="sd"> fn: string</span> |
---|
| 449 | <span class="sd"> Path to file of ECMWF grib table number 128.</span> |
---|
| 450 | |
---|
| 451 | <span class="sd"> @Return:</span> |
---|
| 452 | <span class="sd"> table128: dictionary</span> |
---|
| 453 | <span class="sd"> Contains the ECMWF grib table 128 information.</span> |
---|
| 454 | <span class="sd"> The key is the parameter number and the value is the</span> |
---|
| 455 | <span class="sd"> short name of the parameter.</span> |
---|
| 456 | <span class="sd"> '''</span> |
---|
| 457 | <span class="n">table128</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span> |
---|
| 458 | <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fn</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span> |
---|
| 459 | <span class="n">fdata</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="p">)</span> |
---|
| 460 | <span class="k">for</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">fdata</span><span class="p">:</span> |
---|
| 461 | <span class="k">if</span> <span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="s1">'!'</span><span class="p">:</span> |
---|
| 462 | <span class="n">table128</span><span class="p">[</span><span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">3</span><span class="p">]]</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="mi">59</span><span class="p">:</span><span class="mi">64</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> |
---|
| 463 | |
---|
| 464 | <span class="k">return</span> <span class="n">table128</span></div> |
---|
| 465 | |
---|
| 466 | |
---|
| 467 | <div class="viewcode-block" id="toparamId"><a class="viewcode-back" href="../code.html#Tools.toparamId">[docs]</a><span class="k">def</span> <span class="nf">toparamId</span><span class="p">(</span><span class="n">pars</span><span class="p">,</span> <span class="n">table</span><span class="p">):</span> |
---|
| 468 | <span class="sd">'''</span> |
---|
| 469 | <span class="sd"> @Description:</span> |
---|
| 470 | <span class="sd"> Transform parameter names to parameter ids</span> |
---|
| 471 | <span class="sd"> with ECMWF grib table 128.</span> |
---|
| 472 | |
---|
| 473 | <span class="sd"> @Input:</span> |
---|
| 474 | <span class="sd"> pars: string</span> |
---|
| 475 | <span class="sd"> Addpar argument from control file in the format of</span> |
---|
| 476 | <span class="sd"> parameter names instead of ids. The parameter short</span> |
---|
| 477 | <span class="sd"> names are sepearted with "/" and they are passed as</span> |
---|
| 478 | <span class="sd"> one single string.</span> |
---|
| 479 | |
---|
| 480 | <span class="sd"> table: dictionary</span> |
---|
| 481 | <span class="sd"> Contains the ECMWF grib table 128 information.</span> |
---|
| 482 | <span class="sd"> The key is the parameter number and the value is the</span> |
---|
| 483 | <span class="sd"> short name of the parameter.</span> |
---|
| 484 | |
---|
| 485 | <span class="sd"> @Return:</span> |
---|
| 486 | <span class="sd"> ipar: list of integer</span> |
---|
| 487 | <span class="sd"> List of addpar parameters from control file transformed to</span> |
---|
| 488 | <span class="sd"> parameter ids in the format of integer.</span> |
---|
| 489 | <span class="sd"> '''</span> |
---|
| 490 | <span class="n">cpar</span> <span class="o">=</span> <span class="n">pars</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span> |
---|
| 491 | <span class="n">ipar</span> <span class="o">=</span> <span class="p">[]</span> |
---|
| 492 | <span class="k">for</span> <span class="n">par</span> <span class="ow">in</span> <span class="n">cpar</span><span class="p">:</span> |
---|
| 493 | <span class="n">found</span> <span class="o">=</span> <span class="kc">False</span> |
---|
| 494 | <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">table</span><span class="o">.</span><span class="n">iteritems</span><span class="p">():</span> |
---|
| 495 | <span class="k">if</span> <span class="n">par</span> <span class="o">==</span> <span class="n">k</span> <span class="ow">or</span> <span class="n">par</span> <span class="o">==</span> <span class="n">v</span><span class="p">:</span> |
---|
| 496 | <span class="n">ipar</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">k</span><span class="p">))</span> |
---|
| 497 | <span class="n">found</span> <span class="o">=</span> <span class="kc">True</span> |
---|
| 498 | <span class="k">break</span> |
---|
| 499 | <span class="k">if</span> <span class="n">found</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span> |
---|
| 500 | <span class="nb">print</span><span class="p">(</span><span class="s1">'Warning: par '</span> <span class="o">+</span> <span class="n">par</span> <span class="o">+</span> <span class="s1">' not found in table 128'</span><span class="p">)</span> |
---|
| 501 | |
---|
| 502 | <span class="k">return</span> <span class="n">ipar</span></div> |
---|
| 503 | |
---|
| 504 | <div class="viewcode-block" id="getListAsString"><a class="viewcode-back" href="../code.html#Tools.getListAsString">[docs]</a><span class="k">def</span> <span class="nf">getListAsString</span><span class="p">(</span><span class="n">listobj</span><span class="p">):</span> |
---|
| 505 | <span class="sd">'''</span> |
---|
| 506 | <span class="sd"> @Description:</span> |
---|
| 507 | <span class="sd"> '''</span> |
---|
| 508 | <span class="k">return</span> <span class="s2">", "</span><span class="o">.</span><span class="n">join</span><span class="p">(</span> <span class="nb">str</span><span class="p">(</span><span class="n">l</span><span class="p">)</span> <span class="k">for</span> <span class="n">l</span> <span class="ow">in</span> <span class="n">listobj</span><span class="p">)</span></div> |
---|
| 509 | </pre></div> |
---|
| 510 | |
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| 511 | </div> |
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| 512 | </div> |
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| 513 | </div> |
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| 514 | <div class="sphinxsidebar" role="navigation" aria-label="main navigation"> |
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| 517 | <h3>Quick search</h3> |
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| 518 | <form class="search" action="../search.html" method="get"> |
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| 519 | <div><input type="text" name="q" /></div> |
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| 523 | </form> |
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| 525 | <script type="text/javascript">$('#searchbox').show(0);</script> |
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| 526 | </div> |
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| 527 | </div> |
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| 528 | <div class="clearer"></div> |
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| 529 | </div> |
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| 530 | <div class="related" role="navigation" aria-label="related navigation"> |
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| 531 | <h3>Navigation</h3> |
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| 532 | <ul> |
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| 533 | <li class="right" style="margin-right: 10px"> |
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| 534 | <a href="../genindex.html" title="General Index" |
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| 535 | >index</a></li> |
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| 536 | <li class="right" > |
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| 537 | <a href="../py-modindex.html" title="Python Module Index" |
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| 538 | >modules</a> |</li> |
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| 539 | <li class="nav-item nav-item-0"><a href="../index.html">flex_extract_test 7.1 documentation</a> »</li> |
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| 540 | <li class="nav-item nav-item-1"><a href="index.html" >Module code</a> »</li> |
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| 541 | </ul> |
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| 542 | </div> |
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| 543 | <div class="footer" role="contentinfo"> |
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| 544 | © Copyright 2018, AP. |
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