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58 | <div class="version"> |
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59 | 7.1 |
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60 | </div> |
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84 | <ul> |
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85 | <li class="toctree-l1"><a class="reference internal" href="../downloads.html">Downloads</a></li> |
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136 | <li><a href="index.html">Module code</a> »</li> |
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137 | |
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138 | <li>submit</li> |
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152 | |
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153 | <h1>Source code for submit</h1><div class="highlight"><pre> |
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154 | <span></span><span class="ch">#!/usr/bin/env python</span> |
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155 | <span class="c1"># -*- coding: utf-8 -*-</span> |
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156 | <span class="c1">#*******************************************************************************</span> |
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157 | <span class="c1"># @Author: Anne Fouilloux (University of Oslo)</span> |
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158 | <span class="c1">#</span> |
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159 | <span class="c1"># @Date: October 2014</span> |
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160 | <span class="c1">#</span> |
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161 | <span class="c1"># @Change History:</span> |
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162 | <span class="c1">#</span> |
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163 | <span class="c1"># November 2015 - Leopold Haimberger (University of Vienna):</span> |
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164 | <span class="c1"># - job submission on ecgate and cca</span> |
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165 | <span class="c1"># - job templates suitable for twice daily operational dissemination</span> |
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166 | <span class="c1">#</span> |
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167 | <span class="c1"># February 2018 - Anne Philipp (University of Vienna):</span> |
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168 | <span class="c1"># - applied PEP8 style guide</span> |
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169 | <span class="c1"># - added documentation</span> |
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170 | <span class="c1"># - minor changes in programming style (for consistence)</span> |
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171 | <span class="c1"># - changed path names to variables from config file</span> |
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172 | <span class="c1"># - added option for writing mars requests to extra file</span> |
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173 | <span class="c1"># additionally, as option without submitting the mars jobs</span> |
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174 | <span class="c1"># - splitted submit function to use genshi templates for the</span> |
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175 | <span class="c1"># job script and avoid code duplication</span> |
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176 | <span class="c1">#</span> |
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177 | <span class="c1"># @License:</span> |
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178 | <span class="c1"># (C) Copyright 2014-2019.</span> |
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179 | <span class="c1"># Anne Philipp, Leopold Haimberger</span> |
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180 | <span class="c1">#</span> |
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181 | <span class="c1"># This work is licensed under the Creative Commons Attribution 4.0</span> |
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182 | <span class="c1"># International License. To view a copy of this license, visit</span> |
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183 | <span class="c1"># http://creativecommons.org/licenses/by/4.0/ or send a letter to</span> |
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184 | <span class="c1"># Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</span> |
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185 | <span class="c1">#*******************************************************************************</span> |
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186 | <span class="sd">'''This script allows the user to extract meteorological fields from the ECMWF.</span> |
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187 | |
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188 | <span class="sd">It prepares the settings for retrieving the data from ECMWF servers and</span> |
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189 | <span class="sd">process the resulting files to prepare them for the use with FLEXPART or</span> |
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190 | <span class="sd">FLEXTRA.</span> |
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191 | |
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192 | <span class="sd">If it is supposed to work locally then it works through the necessary</span> |
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193 | <span class="sd">functions get_mars_data and prepare_flexpart. Otherwise it prepares</span> |
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194 | <span class="sd">a job script (korn shell) which will do the necessary work on the</span> |
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195 | <span class="sd">ECMWF server. This script will de submitted via the ecaccess command</span> |
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196 | <span class="sd">ecaccess-job-submit.</span> |
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197 | |
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198 | <span class="sd">This file can also be imported as a module which then contains the following</span> |
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199 | <span class="sd">functions:</span> |
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200 | |
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201 | <span class="sd"> * main - the main function of the script</span> |
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202 | <span class="sd"> * submit - calls mk_jobscript depending on operation mode and submits its</span> |
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203 | <span class="sd"> * mk_jobscript - creates the job script from a template</span> |
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204 | |
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205 | <span class="sd">Type: submit.py --help</span> |
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206 | <span class="sd">to get information about command line parameters.</span> |
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207 | <span class="sd">Read the documentation for usage instructions.</span> |
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208 | <span class="sd">'''</span> |
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209 | |
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210 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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211 | <span class="c1"># MODULES</span> |
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212 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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213 | <span class="kn">import</span> <span class="nn">os</span> |
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214 | <span class="kn">import</span> <span class="nn">sys</span> |
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215 | <span class="kn">import</span> <span class="nn">subprocess</span> |
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216 | <span class="kn">import</span> <span class="nn">inspect</span> |
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217 | <span class="kn">import</span> <span class="nn">collections</span> |
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218 | <span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span> |
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219 | |
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220 | <span class="c1"># software specific classes and modules from flex_extract</span> |
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221 | <span class="kn">import</span> <span class="nn">_config</span> |
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222 | <span class="kn">from</span> <span class="nn">mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">normal_exit</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span> |
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223 | <span class="n">submit_job_to_ecserver</span><span class="p">,</span> <span class="n">read_ecenv</span><span class="p">)</span> |
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224 | <span class="kn">from</span> <span class="nn">mods.get_mars_data</span> <span class="k">import</span> <span class="n">get_mars_data</span> |
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225 | <span class="kn">from</span> <span class="nn">mods.prepare_flexpart</span> <span class="k">import</span> <span class="n">prepare_flexpart</span> |
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226 | <span class="kn">from</span> <span class="nn">classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span> |
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227 | |
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228 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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229 | <span class="c1"># METHODS</span> |
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230 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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231 | |
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232 | <div class="viewcode-block" id="main"><a class="viewcode-back" href="../api.html#submit.main">[docs]</a><span class="k">def</span> <span class="nf">main</span><span class="p">():</span> |
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233 | <span class="sd">'''Get the arguments from script call and from CONTROL file.</span> |
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234 | <span class="sd"> Decides from the argument "queue" if the local version</span> |
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235 | <span class="sd"> is done "queue=None" or the gateway version with "queue=ecgate"</span> |
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236 | <span class="sd"> or "queue=cca".</span> |
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237 | |
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238 | <span class="sd"> Parameters</span> |
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239 | <span class="sd"> ----------</span> |
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240 | |
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241 | <span class="sd"> Return</span> |
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242 | <span class="sd"> ------</span> |
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243 | |
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244 | <span class="sd"> '''</span> |
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245 | |
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246 | <span class="n">args</span> <span class="o">=</span> <span class="n">get_cmdline_args</span><span class="p">()</span> |
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247 | <span class="n">c</span> <span class="o">=</span> <span class="n">ControlFile</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">controlfile</span><span class="p">)</span> |
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248 | |
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249 | <span class="n">env_parameter</span> <span class="o">=</span> <span class="n">read_ecenv</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span> |
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250 | <span class="n">c</span><span class="o">.</span><span class="n">assign_args_to_control</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> |
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251 | <span class="n">c</span><span class="o">.</span><span class="n">assign_envs_to_control</span><span class="p">(</span><span class="n">env_parameter</span><span class="p">)</span> |
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252 | <span class="n">c</span><span class="o">.</span><span class="n">check_conditions</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">queue</span><span class="p">)</span> |
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253 | |
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254 | <span class="c1"># on local side</span> |
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255 | <span class="c1"># on ECMWF server this would also be the local side</span> |
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256 | <span class="n">called_from_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">()</span> |
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257 | <span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">queue</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
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258 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="s1">'/'</span><span class="p">:</span> |
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259 | <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">called_from_dir</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">)</span> |
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260 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="s1">'/'</span><span class="p">:</span> |
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261 | <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">called_from_dir</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span><span class="p">)</span> |
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262 | <span class="n">get_mars_data</span><span class="p">(</span><span class="n">c</span><span class="p">)</span> |
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263 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">request</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">c</span><span class="o">.</span><span class="n">request</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span> |
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264 | <span class="n">prepare_flexpart</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">ppid</span><span class="p">,</span> <span class="n">c</span><span class="p">)</span> |
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265 | <span class="n">exit_message</span> <span class="o">=</span> <span class="s1">'FLEX_EXTRACT IS DONE!'</span> |
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266 | <span class="k">else</span><span class="p">:</span> |
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267 | <span class="n">exit_message</span> <span class="o">=</span> <span class="s1">'PRINTING MARS_REQUESTS DONE!'</span> |
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268 | <span class="c1"># send files to ECMWF server</span> |
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269 | <span class="k">else</span><span class="p">:</span> |
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270 | <span class="n">submit</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">job_template</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">args</span><span class="o">.</span><span class="n">queue</span><span class="p">)</span> |
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271 | <span class="n">exit_message</span> <span class="o">=</span> <span class="s1">'FLEX_EXTRACT JOB SCRIPT IS SUBMITED!'</span> |
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272 | |
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273 | <span class="n">normal_exit</span><span class="p">(</span><span class="n">exit_message</span><span class="p">)</span> |
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274 | |
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275 | <span class="k">return</span></div> |
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276 | |
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277 | <div class="viewcode-block" id="submit"><a class="viewcode-back" href="../api.html#submit.submit">[docs]</a><span class="k">def</span> <span class="nf">submit</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">queue</span><span class="p">):</span> |
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278 | <span class="sd">'''Prepares the job script and submits it to the specified queue.</span> |
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279 | |
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280 | <span class="sd"> Parameters</span> |
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281 | <span class="sd"> ----------</span> |
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282 | <span class="sd"> jtemplate : str</span> |
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283 | <span class="sd"> Job template file from sub-directory "_templates" for</span> |
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284 | <span class="sd"> submission to ECMWF. It contains all necessary</span> |
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285 | <span class="sd"> module and variable settings for the ECMWF environment as well as</span> |
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286 | <span class="sd"> the job call and mail report instructions.</span> |
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287 | <span class="sd"> Default is "job.temp".</span> |
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288 | |
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289 | <span class="sd"> c : ControlFile</span> |
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290 | <span class="sd"> Contains all the parameters of CONTROL file and</span> |
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291 | <span class="sd"> command line.</span> |
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292 | |
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293 | <span class="sd"> queue : str</span> |
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294 | <span class="sd"> Name of queue for submission to ECMWF (e.g. ecgate or cca )</span> |
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295 | |
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296 | <span class="sd"> Return</span> |
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297 | <span class="sd"> ------</span> |
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298 | |
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299 | <span class="sd"> '''</span> |
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300 | |
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301 | <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">:</span> |
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302 | <span class="c1"># --------- create on demand job script ------------------------------------</span> |
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303 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">purefc</span><span class="p">:</span> |
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304 | <span class="nb">print</span><span class="p">(</span><span class="s1">'---- Pure forecast mode! ----'</span><span class="p">)</span> |
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305 | <span class="k">else</span><span class="p">:</span> |
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306 | <span class="nb">print</span><span class="p">(</span><span class="s1">'---- On-demand mode! ----'</span><span class="p">)</span> |
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307 | |
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308 | <span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span> |
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309 | <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'.ksh'</span><span class="p">)</span> |
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310 | |
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311 | <span class="c1"># divide time periode into specified number of job chunks</span> |
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312 | <span class="c1"># to have multiple job scripts</span> |
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313 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">job_chunk</span><span class="p">:</span> |
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314 | <span class="n">start</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">start_date</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span> |
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315 | <span class="n">end</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span> |
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316 | <span class="n">chunk</span> <span class="o">=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">days</span><span class="o">=</span><span class="n">c</span><span class="o">.</span><span class="n">job_chunk</span><span class="p">)</span> |
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317 | |
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318 | <span class="k">while</span> <span class="n">start</span> <span class="o"><=</span> <span class="n">end</span><span class="p">:</span> |
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319 | <span class="k">if</span> <span class="p">(</span><span class="n">start</span> <span class="o">+</span> <span class="n">chunk</span><span class="p">)</span> <span class="o"><=</span> <span class="n">end</span><span class="p">:</span> |
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320 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="p">(</span><span class="n">start</span> <span class="o">+</span> <span class="n">chunk</span><span class="p">)</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">)</span> |
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321 | <span class="k">else</span><span class="p">:</span> |
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322 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="n">end</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">)</span> |
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323 | |
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324 | <span class="n">clist</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> |
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325 | |
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326 | <span class="n">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">)</span> |
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327 | |
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328 | <span class="n">job_id</span> <span class="o">=</span> <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">queue</span><span class="p">,</span> <span class="n">job_file</span><span class="p">)</span> |
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329 | <span class="nb">print</span><span class="p">(</span><span class="s1">'The job id is: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">job_id</span><span class="o">.</span><span class="n">strip</span><span class="p">()))</span> |
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330 | |
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331 | <span class="n">start</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">chunk</span> |
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332 | <span class="n">c</span><span class="o">.</span><span class="n">start_date</span> <span class="o">=</span> <span class="n">start</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">)</span> |
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333 | <span class="c1"># submit a single job script</span> |
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334 | <span class="k">else</span><span class="p">:</span> |
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335 | <span class="n">clist</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> |
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336 | |
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337 | <span class="n">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">)</span> |
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338 | |
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339 | <span class="n">job_id</span> <span class="o">=</span> <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">queue</span><span class="p">,</span> <span class="n">job_file</span><span class="p">)</span> |
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340 | <span class="nb">print</span><span class="p">(</span><span class="s1">'The job id is: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">job_id</span><span class="o">.</span><span class="n">strip</span><span class="p">()))</span> |
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341 | |
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342 | <span class="k">else</span><span class="p">:</span> |
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343 | <span class="c1"># --------- create operational job script ----------------------------------</span> |
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344 | <span class="nb">print</span><span class="p">(</span><span class="s1">'---- Operational mode! ----'</span><span class="p">)</span> |
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345 | |
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346 | <span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span> |
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347 | <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'oper.ksh'</span><span class="p">)</span> |
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348 | |
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349 | <span class="n">c</span><span class="o">.</span><span class="n">start_date</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_YEAR}</span><span class="s1">$</span><span class="si">{MSJ_MONTH}</span><span class="s1">$</span><span class="si">{MSJ_DAY}</span><span class="s1">'</span> |
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350 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_YEAR}</span><span class="s1">$</span><span class="si">{MSJ_MONTH}</span><span class="s1">$</span><span class="si">{MSJ_DAY}</span><span class="s1">'</span> |
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351 | <span class="n">c</span><span class="o">.</span><span class="n">base_time</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_BASETIME}</span><span class="s1">'</span> |
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352 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">maxstep</span> <span class="o">></span> <span class="mi">24</span><span class="p">:</span> |
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353 | <span class="n">c</span><span class="o">.</span><span class="n">time</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_BASETIME}</span><span class="s1"> </span><span class="si">{MSJ_BASETIME}</span><span class="s1">'</span> |
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354 | |
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355 | <span class="n">clist</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> |
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356 | |
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357 | <span class="n">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">)</span> |
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358 | |
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359 | <span class="n">job_id</span> <span class="o">=</span> <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">queue</span><span class="p">,</span> <span class="n">job_file</span><span class="p">)</span> |
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360 | <span class="nb">print</span><span class="p">(</span><span class="s1">'The job id is: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">job_id</span><span class="o">.</span><span class="n">strip</span><span class="p">()))</span> |
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361 | |
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362 | <span class="nb">print</span><span class="p">(</span><span class="s1">'You should get an email per job with subject flex.hostname.pid'</span><span class="p">)</span> |
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363 | |
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364 | <span class="k">return</span></div> |
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365 | |
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366 | <div class="viewcode-block" id="mk_jobscript"><a class="viewcode-back" href="../api.html#submit.mk_jobscript">[docs]</a><span class="k">def</span> <span class="nf">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">):</span> |
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367 | <span class="sd">'''Creates the job script from template.</span> |
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368 | |
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369 | <span class="sd"> Parameters</span> |
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370 | <span class="sd"> ----------</span> |
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371 | <span class="sd"> jtemplate : str</span> |
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372 | <span class="sd"> Job template file from sub-directory "_templates" for</span> |
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373 | <span class="sd"> submission to ECMWF. It contains all necessary</span> |
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374 | <span class="sd"> module and variable settings for the ECMWF environment as well as</span> |
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375 | <span class="sd"> the job call and mail report instructions.</span> |
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376 | <span class="sd"> Default is "job.temp".</span> |
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377 | |
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378 | <span class="sd"> job_file : str</span> |
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379 | <span class="sd"> Path to the job script file.</span> |
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380 | |
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381 | <span class="sd"> clist : list of str</span> |
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382 | <span class="sd"> Contains all necessary parameters for ECMWF CONTROL file.</span> |
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383 | |
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384 | <span class="sd"> Return</span> |
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385 | <span class="sd"> ------</span> |
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386 | |
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387 | <span class="sd"> '''</span> |
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388 | <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span> |
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389 | <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span> <span class="n">TemplateLoader</span> |
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390 | <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span> <span class="n">UndefinedError</span> |
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391 | |
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392 | <span class="c1"># load template and insert control content as list</span> |
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393 | <span class="k">try</span><span class="p">:</span> |
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394 | <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span> |
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395 | <span class="n">control_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> |
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396 | <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span> |
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397 | |
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398 | <span class="n">stream</span> <span class="o">=</span> <span class="n">control_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">control_content</span><span class="o">=</span><span class="n">clist</span><span class="p">)</span> |
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399 | <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
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400 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span> |
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401 | |
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402 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate jobscript'</span><span class="p">)</span> |
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403 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
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404 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
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405 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
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406 | |
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407 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate jobscript'</span><span class="p">)</span> |
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408 | |
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409 | <span class="c1"># create jobscript file</span> |
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410 | <span class="k">try</span><span class="p">:</span> |
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411 | <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">job_file</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span> |
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412 | <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">'text'</span><span class="p">))</span> |
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413 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
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414 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
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415 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
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416 | |
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417 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to write '</span> <span class="o">+</span> <span class="n">job_file</span><span class="p">)</span> |
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418 | |
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419 | <span class="k">return</span></div> |
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420 | |
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421 | |
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422 | <span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">"__main__"</span><span class="p">:</span> |
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423 | <span class="n">main</span><span class="p">()</span> |
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424 | </pre></div> |
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425 | |
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426 | </div> |
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427 | |
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428 | </div> |
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429 | <footer> |
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430 | |
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431 | |
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432 | <hr/> |
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433 | |
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434 | <div role="contentinfo"> |
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435 | <p> |
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436 | © Copyright 2018, Anne Philipp and Leopold Haimberger |
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437 | |
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438 | </p> |
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439 | </div> |
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440 | Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. |
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441 | |
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442 | </footer> |
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443 | |
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444 | </div> |
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445 | </div> |
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446 | |
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447 | </section> |
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448 | |
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449 | </div> |
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450 | |
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451 | |
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452 | |
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453 | |
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454 | |
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455 | |
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456 | |
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457 | <script type="text/javascript" id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script> |
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458 | <script type="text/javascript" src="../_static/jquery.js"></script> |
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459 | <script type="text/javascript" src="../_static/underscore.js"></script> |
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460 | <script type="text/javascript" src="../_static/doctools.js"></script> |
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461 | |
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462 | |
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463 | |
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464 | |
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465 | <script type="text/javascript" src="../_static/js/theme.js"></script> |
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466 | |
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467 | <script type="text/javascript"> |
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468 | jQuery(function () { |
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469 | SphinxRtdTheme.Navigation.enable(true); |
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470 | }); |
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471 | </script> |
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472 | |
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473 | </body> |
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474 | </html> |
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