dev
Last change
on this file since d9afe04 was
d9afe04,
checked in by Anne Tipka <anne.tipka@…>, 19 months ago
|
corrected setting up module environment in shell script templates
|
-
Property mode set to
100644
|
File size:
1.6 KB
|
Line | |
---|
1 | #!/bin/bash |
---|
2 | |
---|
3 | # ON ECS or HPC: |
---|
4 | # start with ecaccess-job-submit -queueName <QUEUE_NAME> <NAME_OF_THIS_FILE> on gateway server |
---|
5 | # start with sbatch <NAME_OF_THIS_FILE> directly on machine |
---|
6 | |
---|
7 | #SBATCH --chdir=/scratch/$username |
---|
8 | #SBATCH --qos=el |
---|
9 | #SBATCH --job-name=flex_extract |
---|
10 | #SBATCH --output=flex_extract.%j.out |
---|
11 | #SBATCH --error=flex_extract.%j.out |
---|
12 | #SBATCH --mail-type=FAIL |
---|
13 | #SBATCH --mail-user=$username |
---|
14 | #SBATCH --time=24:00:00 |
---|
15 | ## job output is in .ecaccess_DO_NOT_REMOVE |
---|
16 | |
---|
17 | set -x |
---|
18 | export VERSION=$version_number |
---|
19 | case $$$${EC_CLUSTER} in |
---|
20 | *ecs*) |
---|
21 | module purge |
---|
22 | module load prgenv/gnu gcc/8.4.1 |
---|
23 | module load python3 |
---|
24 | module load ecmwf-toolbox |
---|
25 | module load ecaccess |
---|
26 | export PATH=$$$${PATH}:$fp_root_path |
---|
27 | ;; |
---|
28 | *hpc*) |
---|
29 | module purge |
---|
30 | module load prgenv/gnu gcc/8.4.1 |
---|
31 | module load python3 |
---|
32 | module load ecmwf-toolbox |
---|
33 | module load ecaccess |
---|
34 | export SCRATCH=$$$${TMPDIR} |
---|
35 | export PATH=$$$${PATH}:$fp_root_path |
---|
36 | ;; |
---|
37 | esac |
---|
38 | |
---|
39 | cd $$$${SCRATCH} |
---|
40 | mkdir -p extract$$$$$$$$ |
---|
41 | cd extract$$$$$$$$ |
---|
42 | |
---|
43 | export CONTROL=CONTROL |
---|
44 | |
---|
45 | cat >$$$${CONTROL}<<EOF |
---|
46 | $$control_content |
---|
47 | EOF |
---|
48 | |
---|
49 | |
---|
50 | submit.py --controlfile=$$$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1 |
---|
51 | |
---|
52 | if [ $? -eq 0 ] ; then |
---|
53 | l=0 |
---|
54 | for muser in `grep -i MAILOPS $$$${CONTROL}`; do |
---|
55 | if [ $$$${l} -gt 0 ] ; then |
---|
56 | mail -s flex.$$$${HOST}.$$$$$$$$ $$$${muser} <prot |
---|
57 | sleep 1 |
---|
58 | fi |
---|
59 | l=$(($$$${l}+1)) |
---|
60 | done |
---|
61 | else |
---|
62 | l=0 |
---|
63 | for muser in `grep -i MAILFAIL $$$${CONTROL}`; do |
---|
64 | if [ $$$${l} -gt 0 ] ; then |
---|
65 | mail -s "ERROR! flex.$$$${HOST}.$$$$$$$$" $$$${muser} <prot |
---|
66 | sleep 1 |
---|
67 | fi |
---|
68 | l=$(($$$${l}+1)) |
---|
69 | done |
---|
70 | fi |
---|
71 | |
---|
Note: See
TracBrowser
for help on using the repository browser.