[d69b677] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | # ON ECGB: |
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| 4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server |
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| 5 | # start with sbatch NAME_OF_THIS_FILE directly on machine |
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| 6 | |
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[c5074d2] | 7 | #SBATCH --workdir=/scratch/ms/$usergroup/$username |
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[d69b677] | 8 | #SBATCH --qos=normal |
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| 9 | #SBATCH --job-name=flex_ecmwf |
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| 10 | #SBATCH --output=flex_ecmwf.%j.out |
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| 11 | #SBATCH --error=flex_ecmwf.%j.out |
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| 12 | #SBATCH --mail-type=FAIL |
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| 13 | #SBATCH --time=12:00:00 |
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| 14 | |
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| 15 | ## CRAY specific batch requests |
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| 16 | ##PBS -N flex_ecmwf |
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| 17 | ##PBS -q np |
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| 18 | ##PBS -S /usr/bin/ksh |
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[b02a07e] | 19 | ## -o /scratch/ms/$usergroup/$username/flex_ecmwf.$$$${PBS_JOBID}.out |
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[d69b677] | 20 | ## job output is in .ecaccess_DO_NOT_REMOVE |
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| 21 | ##PBS -j oe |
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| 22 | ##PBS -V |
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| 23 | ##PBS -l EC_threads_per_task=24 |
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| 24 | ##PBS -l EC_memory_per_task=32000MB |
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| 25 | |
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| 26 | set -x |
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[c5074d2] | 27 | export VERSION=$version_number |
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[b02a07e] | 28 | case $$$${HOST} in |
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[d69b677] | 29 | *ecg*) |
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| 30 | module unload grib_api |
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[c97d8ec] | 31 | module unload eccodes |
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[79729d5] | 32 | module unload python |
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[d69b677] | 33 | module unload emos |
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[8463d78] | 34 | module load python3/3.6.8-01 |
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[e44fdb9] | 35 | module load eccodes/2.13.0 |
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[b02a07e] | 36 | module load emos/455-r64 |
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| 37 | export PATH=$$$${PATH}:$fp_root_path |
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[d69b677] | 38 | ;; |
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| 39 | *cca*) |
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[79729d5] | 40 | module unload python |
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[d69b677] | 41 | module switch PrgEnv-cray PrgEnv-intel |
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[79729d5] | 42 | module load python3 |
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[e44fdb9] | 43 | module load eccodes/2.13.0 |
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[8463d78] | 44 | module load emos/455-r64 |
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[b02a07e] | 45 | export SCRATCH=$$$${TMPDIR} |
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| 46 | export PATH=$$$${PATH}:$fp_root_path |
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[d69b677] | 47 | ;; |
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| 48 | esac |
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| 49 | |
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[b02a07e] | 50 | cd $$$${SCRATCH} |
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| 51 | mkdir -p python$$$$$$$$ |
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| 52 | cd python$$$$$$$$ |
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[d69b677] | 53 | |
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[25b14be] | 54 | export CONTROL=CONTROL |
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[d69b677] | 55 | |
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[b02a07e] | 56 | cat >$$$${CONTROL}<<EOF |
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| 57 | $$control_content |
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[d69b677] | 58 | EOF |
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| 59 | |
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| 60 | |
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[b02a07e] | 61 | submit.py --controlfile=$$$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1 |
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[d69b677] | 62 | |
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| 63 | if [ $? -eq 0 ] ; then |
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| 64 | l=0 |
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[b02a07e] | 65 | for muser in `grep -i MAILOPS $$$${CONTROL}`; do |
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| 66 | if [ $$$${l} -gt 0 ] ; then |
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| 67 | mail -s flex.$$$${HOST}.$$$$$$$$ $$$${muser} <prot |
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[d69b677] | 68 | fi |
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[b02a07e] | 69 | l=$(($$$${l}+1)) |
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[d69b677] | 70 | done |
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| 71 | else |
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| 72 | l=0 |
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[b02a07e] | 73 | for muser in `grep -i MAILFAIL $$$${CONTROL}`; do |
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| 74 | if [ $$$${l} -gt 0 ] ; then |
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| 75 | mail -s "ERROR! flex.$$$${HOST}.$$$$$$$$" $$$${muser} <prot |
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[d69b677] | 76 | fi |
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[b02a07e] | 77 | l=$(($$$${l}+1)) |
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[d69b677] | 78 | done |
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| 79 | fi |
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| 80 | |
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