[0aaeb04] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | # ON ECGB: |
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| 4 | # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server |
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| 5 | # start with sbatch NAME_OF_THIS_FILE directly on machine |
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| 6 | |
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| 7 | #SBATCH --workdir=/scratch/ms/$usergroup/$username |
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| 8 | #SBATCH --qos=normal |
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| 9 | #SBATCH --job-name=flex_ecmwf |
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| 10 | #SBATCH --output=flex_ecmwf.%j.out |
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| 11 | #SBATCH --error=flex_ecmwf.%j.out |
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| 12 | #SBATCH --mail-type=FAIL |
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| 13 | #SBATCH --time=12:00:00 |
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| 14 | |
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| 15 | ## CRAY specific batch requests |
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| 16 | ##PBS -N flex_ecmwf |
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| 17 | ##PBS -q ns |
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| 18 | ##PBS -S /usr/bin/ksh |
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[c5074d2] | 19 | ##PBS -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${Jobname}.$${Job_ID}.out |
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[0aaeb04] | 20 | # job output is in .ecaccess_DO_NOT_REMOVE |
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| 21 | ##PBS -j oe |
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| 22 | ##PBS -V |
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| 23 | ##PBS -l EC_threads_per_task=1 |
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| 24 | ##PBS -l EC_memory_per_task=3200MB |
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| 25 | |
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| 26 | set -x |
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| 27 | export VERSION=$version_number |
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[c5074d2] | 28 | case $${HOST} in |
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[0aaeb04] | 29 | *ecg*) |
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[c97d8ec] | 30 | module unload grib_api |
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[b02a07e] | 31 | module unload eccodes |
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[79729d5] | 32 | module unload python |
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[0aaeb04] | 33 | module unload emos |
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[8463d78] | 34 | module load python3/3.6.8-01 |
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[e44fdb9] | 35 | module load eccodes/2.13.0 |
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[b02a07e] | 36 | module load emos/455-r64 |
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[0aaeb04] | 37 | export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts |
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| 38 | export MAKEFILE=$makefile |
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| 39 | ;; |
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| 40 | *cca*) |
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[79729d5] | 41 | module unload python |
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[0aaeb04] | 42 | module switch PrgEnv-cray PrgEnv-intel |
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[79729d5] | 43 | module load python3 |
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[e44fdb9] | 44 | module load eccodes/2.13.0 |
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[8463d78] | 45 | module load emos/455-r64 |
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[c5074d2] | 46 | echo $${GROUP} |
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| 47 | echo $${HOME} |
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| 48 | echo $${HOME} | awk -F / '{print $1, $2, $3, $4}' |
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| 49 | export GROUP=`echo $${HOME} | awk -F / '{print $4}'` |
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| 50 | export SCRATCH=/scratch/ms/$${GROUP}/$${USER} |
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[0aaeb04] | 51 | export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts |
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| 52 | export MAKEFILE=$makefile |
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| 53 | ;; |
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| 54 | esac |
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| 55 | |
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[c5074d2] | 56 | mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} |
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| 57 | cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} # if FLEXPART_ROOT is not set this means cd to the home directory |
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| 58 | tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar |
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[e44fdb9] | 59 | cd Source/Fortran |
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[0aaeb04] | 60 | \rm *.o *.mod $fortran_program |
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[c5074d2] | 61 | make -f $${MAKEFILE} >flexcompile 2>flexcompile |
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[0aaeb04] | 62 | |
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| 63 | ls -l $fortran_program >>flexcompile |
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[c5074d2] | 64 | if [ $$? -eq 0 ]; then |
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[0aaeb04] | 65 | echo 'SUCCESS!' >>flexcompile |
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[c5074d2] | 66 | mail -s flexcompile.$${HOST}.$$$$ $${USER} <flexcompile |
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[0aaeb04] | 67 | else |
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| 68 | echo Environment: >>flexcompile |
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| 69 | env >> flexcompile |
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[c5074d2] | 70 | mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER} <flexcompile |
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| 71 | fi |
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