[7c4bd59] | 1 | #!/bin/bash |
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| 2 | # |
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| 3 | # @Author: Anne Philipp |
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| 4 | # |
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| 5 | # @Date: October, 4 2018 |
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| 6 | # |
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| 7 | # @Description: |
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| 8 | # This script defines the available command-line parameters |
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| 9 | # for running flex_extract and combines them for the execution |
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| 10 | # of the Python program. It also does some checks to |
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| 11 | # guarantee necessary parameters were set and consistent. |
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| 12 | # |
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| 13 | # @Licence: |
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| 14 | # (C) Copyright 2014-2020. |
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| 15 | # |
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| 16 | # SPDX-License-Identifier: CC-BY-4.0 |
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| 17 | # |
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| 18 | # This work is licensed under the Creative Commons Attribution 4.0 |
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| 19 | # International License. To view a copy of this license, visit |
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| 20 | # http://creativecommons.org/licenses/by/4.0/ or send a letter to |
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| 21 | # Creative Commons, PO Box 1866, Mountain View, CA 94042, USA. |
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| 22 | # |
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| 23 | # ----------------------------------------------------------------- |
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| 24 | # AVAILABLE COMMANDLINE ARGUMENTS TO SET |
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| 25 | # |
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| 26 | # THE USER HAS TO SPECIFY THESE PARAMETERS: |
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| 27 | |
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| 28 | QUEUE='ecs' |
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| 29 | START_DATE=None |
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| 30 | END_DATE=None |
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| 31 | DATE_CHUNK=None |
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| 32 | JOB_CHUNK=3 |
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| 33 | BASETIME=None |
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| 34 | STEP=None |
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| 35 | LEVELIST=None |
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| 36 | AREA=None |
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| 37 | INPUTDIR=None |
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| 38 | OUTPUTDIR=None |
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| 39 | PP_ID=None |
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| 40 | JOB_TEMPLATE='submitscript.template' |
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| 41 | CONTROLFILE='CONTROL_EA5' |
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| 42 | DEBUG=0 |
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| 43 | REQUEST=2 |
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| 44 | PUBLIC=0 |
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| 45 | |
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[7d77efa] | 46 | flex_extract_path=${HOME}/flex_extract_v7.1.3/ |
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| 47 | |
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[7c4bd59] | 48 | # ----------------------------------------------------------------- |
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| 49 | # |
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[7d77efa] | 50 | |
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[7c4bd59] | 51 | # AFTER THIS LINE THE USER DOES NOT HAVE TO CHANGE ANYTHING !!! |
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| 52 | # |
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| 53 | # ----------------------------------------------------------------- |
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| 54 | |
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[7d77efa] | 55 | export PATH=${PATH}:${flex_extract_path}/Source/Python |
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| 56 | |
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[7c4bd59] | 57 | # PATH TO SUBMISSION SCRIPT |
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[7d77efa] | 58 | pyscript=submit.py |
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[7c4bd59] | 59 | |
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| 60 | # INITIALIZE EMPTY PARAMETERLIST |
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| 61 | parameterlist="" |
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| 62 | |
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| 63 | # CHECK IF ON ECMWF SERVER; |
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| 64 | if [[ $EC_CLUSTER == "ecs"* ]] || [[ $EC_CLUSTER == "aa"* ]] || [[ $EC_CLUSTER == "ab"* ]] || [[ $EC_CLUSTER == "ac"* ]] || [[ $EC_CLUSTER == "ad"* ]]; then |
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| 65 | # LOAD PYTHON3 AND ECACCESS MODULES |
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| 66 | module load python3 ecaccess |
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| 67 | fi |
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| 68 | |
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| 69 | # CHECK FOR MORE PARAMETER |
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| 70 | if [ -n "$START_DATE" ]; then |
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| 71 | parameterlist+=" --start_date=$START_DATE" |
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| 72 | fi |
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| 73 | if [ -n "$END_DATE" ]; then |
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| 74 | parameterlist+=" --end_date=$END_DATE" |
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| 75 | fi |
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| 76 | if [ -n "$DATE_CHUNK" ]; then |
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| 77 | parameterlist+=" --date_chunk=$DATE_CHUNK" |
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| 78 | fi |
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| 79 | if [ -n "$JOB_CHUNK" ]; then |
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| 80 | parameterlist+=" --job_chunk=$JOB_CHUNK" |
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| 81 | fi |
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| 82 | if [ -n "$BASETIME" ]; then |
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| 83 | parameterlist+=" --basetime=$BASETIME" |
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| 84 | fi |
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| 85 | if [ -n "$STEP" ]; then |
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| 86 | parameterlist+=" --step=$STEP" |
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| 87 | fi |
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| 88 | if [ -n "$LEVELIST" ]; then |
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| 89 | parameterlist+=" --levelist=$LEVELIST" |
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| 90 | fi |
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| 91 | if [ -n "$AREA" ]; then |
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| 92 | parameterlist+=" --area=$AREA" |
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| 93 | fi |
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| 94 | if [ -n "$INPUTDIR" ]; then |
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| 95 | parameterlist+=" --inputdir=$INPUTDIR" |
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| 96 | fi |
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| 97 | if [ -n "$OUTPUTDIR" ]; then |
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| 98 | parameterlist+=" --outputdir=$OUTPUTDIR" |
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| 99 | fi |
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| 100 | if [ -n "$PP_ID" ]; then |
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| 101 | parameterlist+=" --ppid=$PP_ID" |
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| 102 | fi |
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| 103 | if [ -n "$JOB_TEMPLATE" ]; then |
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| 104 | parameterlist+=" --job_template=$JOB_TEMPLATE" |
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| 105 | fi |
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| 106 | if [ -n "$QUEUE" ]; then |
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| 107 | parameterlist+=" --queue=$QUEUE" |
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| 108 | fi |
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| 109 | if [ -n "$CONTROLFILE" ]; then |
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| 110 | parameterlist+=" --controlfile=$CONTROLFILE" |
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| 111 | fi |
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| 112 | if [ -n "$DEBUG" ]; then |
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| 113 | parameterlist+=" --debug=$DEBUG" |
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| 114 | fi |
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| 115 | if [ -n "$REQUEST" ]; then |
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| 116 | parameterlist+=" --request=$REQUEST" |
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| 117 | fi |
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| 118 | if [ -n "$PUBLIC" ]; then |
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| 119 | parameterlist+=" --public=$PUBLIC" |
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| 120 | fi |
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| 121 | |
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| 122 | # ----------------------------------------------------------------- |
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| 123 | # CALL SCRIPT WITH DETERMINED COMMANDLINE ARGUMENTS |
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| 124 | |
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| 125 | $pyscript $parameterlist |
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| 126 | |
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