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64                7.1
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88              <p class="caption"><span class="caption-text">Table of Contents:</span></p>
89<ul>
90<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
91<li class="toctree-l1"><a class="reference internal" href="../quick_start.html">Quick Start</a></li>
92<li class="toctree-l1"><a class="reference internal" href="../ecmwf_data.html">ECMWF Data</a></li>
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94<li class="toctree-l1"><a class="reference internal" href="../evaluation.html">Evaluation</a></li>
95<li class="toctree-l1"><a class="reference internal" href="../dev_guide.html">Developer Guide</a></li>
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161           
162  <h1>Source code for install</h1><div class="highlight"><pre>
163<span></span><span class="ch">#!/usr/bin/env python</span>
164<span class="c1"># -*- coding: utf-8 -*-</span>
165<span class="c1">#*******************************************************************************</span>
166<span class="c1"># @Author: Leopold Haimberger (University of Vienna)</span>
167<span class="c1">#</span>
168<span class="c1"># @Date: November 2015</span>
169<span class="c1">#</span>
170<span class="c1"># @Change History:</span>
171<span class="c1">#</span>
172<span class="c1">#    February 2018 - Anne Philipp (University of Vienna):</span>
173<span class="c1">#        - applied PEP8 style guide</span>
174<span class="c1">#        - added documentation</span>
175<span class="c1">#        - moved install_args_and_control in here</span>
176<span class="c1">#        - splitted code in smaller functions</span>
177<span class="c1">#        - delete convert build files in here instead of compile job script</span>
178<span class="c1">#        - changed static path names to variables from config file</span>
179<span class="c1">#        - splitted install function into several smaller pieces</span>
180<span class="c1">#        - use of tarfile package in python</span>
181<span class="c1">#</span>
182<span class="c1"># @License:</span>
183<span class="c1">#    (C) Copyright 2014-2019.</span>
184<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
185<span class="c1">#</span>
186<span class="c1">#    This work is licensed under the Creative Commons Attribution 4.0</span>
187<span class="c1">#    International License. To view a copy of this license, visit</span>
188<span class="c1">#    http://creativecommons.org/licenses/by/4.0/ or send a letter to</span>
189<span class="c1">#    Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</span>
190<span class="c1">#</span>
191<span class="c1"># @Methods:</span>
192<span class="c1">#    main</span>
193<span class="c1">#    get_install_cmdline_args</span>
194<span class="c1">#    install_via_gateway</span>
195<span class="c1">#    check_install_conditions</span>
196<span class="c1">#    mk_tarball</span>
197<span class="c1">#    un_tarball</span>
198<span class="c1">#    mk_env_vars</span>
199<span class="c1">#    mk_compilejob</span>
200<span class="c1">#    mk_job_template</span>
201<span class="c1">#    del_convert_build</span>
202<span class="c1">#    mk_convert_build</span>
203<span class="c1">#</span>
204<span class="c1">#*******************************************************************************</span>
205<span class="sd">&#39;&#39;&#39;This script installs the flex_extract program.</span>
206
207<span class="sd">Depending on the selected installation environment (locally or on the</span>
208<span class="sd">ECMWF server ecgate or cca) the program extracts the commandline</span>
209<span class="sd">arguments and the CONTROL file parameter and prepares the corresponding</span>
210<span class="sd">environment.</span>
211<span class="sd">The necessary files are collected in a tar-ball and placed</span>
212<span class="sd">at the target location. There its untared, the environment variables will</span>
213<span class="sd">be set and the Fortran code will be compiled.</span>
214<span class="sd">If the ECMWF environment is selected a job script is prepared and submitted</span>
215<span class="sd">for the remaining configurations after putting the tar-ball to the</span>
216<span class="sd">target ECMWF server.</span>
217
218<span class="sd">Type: install.py --help</span>
219<span class="sd">to get information about command line parameters.</span>
220<span class="sd">Read the documentation for usage instructions.</span>
221<span class="sd">&#39;&#39;&#39;</span>
222
223<span class="c1"># ------------------------------------------------------------------------------</span>
224<span class="c1"># MODULES</span>
225<span class="c1"># ------------------------------------------------------------------------------</span>
226<span class="kn">from</span> <span class="nn">__future__</span> <span class="k">import</span> <span class="n">print_function</span>
227
228<span class="kn">import</span> <span class="nn">os</span>
229<span class="kn">import</span> <span class="nn">sys</span>
230<span class="kn">import</span> <span class="nn">glob</span>
231<span class="kn">import</span> <span class="nn">subprocess</span>
232<span class="kn">import</span> <span class="nn">inspect</span>
233<span class="kn">import</span> <span class="nn">tarfile</span>
234<span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span>
235
236<span class="c1"># software specific classes and modules from flex_extract</span>
237<span class="kn">import</span> <span class="nn">_config</span>
238<span class="kn">from</span> <span class="nn">Classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span>
239<span class="kn">from</span> <span class="nn">Classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
240<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">make_dir</span><span class="p">,</span> <span class="n">put_file_to_ecserver</span><span class="p">,</span> <span class="n">submit_job_to_ecserver</span><span class="p">,</span>
241                        <span class="n">silent_remove</span><span class="p">,</span> <span class="n">execute_subprocess</span><span class="p">,</span> <span class="n">none_or_str</span><span class="p">)</span>
242
243<span class="c1"># ------------------------------------------------------------------------------</span>
244<span class="c1"># FUNCTIONS</span>
245<span class="c1"># ------------------------------------------------------------------------------</span>
246<div class="viewcode-block" id="main"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.main">[docs]</a><span class="k">def</span> <span class="nf">main</span><span class="p">():</span>
247    <span class="sd">&#39;&#39;&#39;Controls the installation process. Calls the installation function</span>
248<span class="sd">    if target is specified.</span>
249
250<span class="sd">    Parameters</span>
251<span class="sd">    ----------</span>
252
253<span class="sd">    Return</span>
254<span class="sd">    ------</span>
255<span class="sd">    &#39;&#39;&#39;</span>
256
257    <span class="n">args</span> <span class="o">=</span> <span class="n">get_install_cmdline_args</span><span class="p">()</span>
258    <span class="n">c</span> <span class="o">=</span> <span class="n">ControlFile</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">controlfile</span><span class="p">)</span>
259    <span class="n">c</span><span class="o">.</span><span class="n">assign_args_to_control</span><span class="p">(</span><span class="n">args</span><span class="p">)</span>
260    <span class="n">check_install_conditions</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
261
262    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">!=</span> <span class="s1">&#39;local&#39;</span><span class="p">:</span> <span class="c1"># ecgate or cca</span>
263        <span class="n">install_via_gateway</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
264    <span class="k">else</span><span class="p">:</span> <span class="c1"># local</span>
265        <span class="n">install_local</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
266
267    <span class="k">return</span></div>
268
269<div class="viewcode-block" id="get_install_cmdline_args"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.get_install_cmdline_args">[docs]</a><span class="k">def</span> <span class="nf">get_install_cmdline_args</span><span class="p">():</span>
270    <span class="sd">&#39;&#39;&#39;Decomposes the command line arguments and assigns them to variables.</span>
271<span class="sd">    Apply default values for non mentioned arguments.</span>
272
273<span class="sd">    Parameters</span>
274<span class="sd">    ----------</span>
275
276<span class="sd">    Return</span>
277<span class="sd">    ------</span>
278<span class="sd">    args : Namespace</span>
279<span class="sd">        Contains the commandline arguments from script/program call.</span>
280<span class="sd">    &#39;&#39;&#39;</span>
281    <span class="n">parser</span> <span class="o">=</span> <span class="n">ArgumentParser</span><span class="p">(</span><span class="n">description</span><span class="o">=</span><span class="s1">&#39;Install flex_extract software &#39;</span>
282                                        <span class="s1">&#39;locally or on ECMWF machines&#39;</span><span class="p">,</span>
283                            <span class="n">formatter_class</span><span class="o">=</span><span class="n">ArgumentDefaultsHelpFormatter</span><span class="p">)</span>
284
285    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">&#39;--target&#39;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s1">&#39;install_target&#39;</span><span class="p">,</span>
286                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
287                        <span class="n">help</span><span class="o">=</span><span class="s2">&quot;Valid targets: local | ecgate | cca , </span><span class="se">\</span>
288<span class="s2">                        the latter two are at ECMWF&quot;</span><span class="p">)</span>
289    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--makefile&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;makefile&quot;</span><span class="p">,</span>
290                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
291                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;Name of Makefile to use for compiling the &#39;</span>
292                        <span class="s1">&#39;Fortran program&#39;</span><span class="p">)</span>
293    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--ecuid&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;ecuid&quot;</span><span class="p">,</span>
294                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
295                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;The user id at ECMWF.&#39;</span><span class="p">)</span>
296    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--ecgid&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;ecgid&quot;</span><span class="p">,</span>
297                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
298                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;The group id at ECMWF.&#39;</span><span class="p">)</span>
299    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--gateway&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;gateway&quot;</span><span class="p">,</span>
300                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
301                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;The name of the local gateway server.&#39;</span><span class="p">)</span>
302    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--destination&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;destination&quot;</span><span class="p">,</span>
303                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
304                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;The ecaccess association, e.g. &#39;</span>
305                        <span class="s1">&#39;myUser@genericSftp&#39;</span><span class="p">)</span>
306
307    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--installdir&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;installdir&quot;</span><span class="p">,</span>
308                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
309                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;Root directory where &#39;</span>
310                        <span class="s1">&#39;flex_extract will be installed to.&#39;</span><span class="p">)</span>
311
312    <span class="c1"># arguments for job submission to ECMWF, only needed by submit.py</span>
313    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--job_template&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s1">&#39;job_template&#39;</span><span class="p">,</span>
314                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="s2">&quot;job.template&quot;</span><span class="p">,</span>
315                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;The rudimentary template file to create a batch &#39;</span>
316                        <span class="s1">&#39;job template for submission to ECMWF servers.&#39;</span><span class="p">)</span>
317
318    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">&quot;--controlfile&quot;</span><span class="p">,</span> <span class="n">dest</span><span class="o">=</span><span class="s2">&quot;controlfile&quot;</span><span class="p">,</span>
319                        <span class="nb">type</span><span class="o">=</span><span class="n">none_or_str</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="s1">&#39;CONTROL_EA5&#39;</span><span class="p">,</span>
320                        <span class="n">help</span><span class="o">=</span><span class="s2">&quot;The file with all CONTROL parameters.&quot;</span><span class="p">)</span>
321
322    <span class="n">args</span> <span class="o">=</span> <span class="n">parser</span><span class="o">.</span><span class="n">parse_args</span><span class="p">()</span>
323
324    <span class="k">return</span> <span class="n">args</span></div>
325
326
327<div class="viewcode-block" id="install_via_gateway"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.install_via_gateway">[docs]</a><span class="k">def</span> <span class="nf">install_via_gateway</span><span class="p">(</span><span class="n">c</span><span class="p">):</span>
328    <span class="sd">&#39;&#39;&#39;Prepare data transfer to remote gate and submit a job script which will</span>
329<span class="sd">    install everything on the remote gate.</span>
330
331<span class="sd">    Parameters</span>
332<span class="sd">    ----------</span>
333<span class="sd">    c : ControlFile</span>
334<span class="sd">        Contains all the parameters of CONTROL file and</span>
335<span class="sd">        command line.</span>
336
337<span class="sd">    Return</span>
338<span class="sd">    ------</span>
339
340<span class="sd">    &#39;&#39;&#39;</span>
341    <span class="kn">import</span> <span class="nn">tarfile</span>
342
343    <span class="n">tarball_name</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">&#39;.tar&#39;</span>
344    <span class="n">tar_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">,</span> <span class="n">tarball_name</span><span class="p">)</span>
345
346    <span class="n">mk_compilejob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span>
347                  <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
348
349    <span class="n">mk_job_template</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span>
350                    <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
351
352    <span class="n">mk_env_vars</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">)</span>
353
354    <span class="n">mk_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
355
356    <span class="n">put_file_to_ecserver</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">,</span> <span class="n">tarball_name</span><span class="p">,</span>
357                         <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">)</span>
358
359    <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span>
360                           <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">,</span>
361                                        <span class="n">_config</span><span class="o">.</span><span class="n">FILE_INSTALL_COMPILEJOB</span><span class="p">))</span>
362
363    <span class="n">silent_remove</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span>
364
365    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Job compilation script has been submitted to ecgate for &#39;</span> <span class="o">+</span>
366          <span class="s1">&#39;installation in &#39;</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">+</span>
367           <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">)</span>
368    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;You should get an email with subject &quot;flexcompile&quot; within &#39;</span> <span class="o">+</span>
369          <span class="s1">&#39;the next few minutes!&#39;</span><span class="p">)</span>
370
371    <span class="k">return</span></div>
372
373<div class="viewcode-block" id="install_local"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.install_local">[docs]</a><span class="k">def</span> <span class="nf">install_local</span><span class="p">(</span><span class="n">c</span><span class="p">):</span>
374    <span class="sd">&#39;&#39;&#39;Perform the actual installation on a local machine.</span>
375
376<span class="sd">    Parameters</span>
377<span class="sd">    ----------</span>
378<span class="sd">    c : ControlFile</span>
379<span class="sd">        Contains all the parameters of CONTROL file and</span>
380<span class="sd">        command line.</span>
381
382<span class="sd">    Return</span>
383<span class="sd">    ------</span>
384
385<span class="sd">    &#39;&#39;&#39;</span>
386    <span class="kn">import</span> <span class="nn">tarfile</span>
387
388    <span class="n">tar_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">,</span>
389                            <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">&#39;.tar&#39;</span><span class="p">)</span>
390
391    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="p">:</span>
392        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: installdir has not been specified&#39;</span><span class="p">)</span>
393        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;flex_extract will be installed in here by compiling the &#39;</span> <span class="o">+</span>
394              <span class="s1">&#39;Fortran source in &#39;</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">)</span>
395        <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">)</span>
396    <span class="k">else</span><span class="p">:</span> <span class="c1"># creates the target working directory for flex_extract</span>
397        <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expandvars</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">expanduser</span><span class="p">(</span>
398            <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">))</span>
399        <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">)</span> <span class="o">!=</span> \
400           <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">):</span>
401            <span class="n">mk_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
402            <span class="n">make_dir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
403                                   <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
404            <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
405                                   <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
406            <span class="n">un_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span>
407            <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
408                                   <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
409                                  <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">))</span>
410
411    <span class="c1"># Create Fortran executable - CONVERT2</span>
412    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Install &#39;</span> <span class="o">+</span>  <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">&#39; software at &#39;</span> <span class="o">+</span>
413          <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">+</span> <span class="s1">&#39; in directory &#39;</span> <span class="o">+</span>
414          <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
415
416    <span class="n">del_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)</span>
417    <span class="n">mk_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span>
418
419    <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">)</span>
420    <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isfile</span><span class="p">(</span><span class="n">tar_file</span><span class="p">):</span>
421        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span>
422
423    <span class="k">return</span></div>
424
425
426<div class="viewcode-block" id="check_install_conditions"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.check_install_conditions">[docs]</a><span class="k">def</span> <span class="nf">check_install_conditions</span><span class="p">(</span><span class="n">c</span><span class="p">):</span>
427    <span class="sd">&#39;&#39;&#39;Checks a couple of necessary attributes and conditions</span>
428<span class="sd">    for the installation such as if they exist and contain values.</span>
429<span class="sd">    Otherwise set default values.</span>
430
431<span class="sd">    Parameters</span>
432<span class="sd">    ----------</span>
433<span class="sd">    c : ControlFile</span>
434<span class="sd">        Contains all the parameters of CONTROL file and</span>
435<span class="sd">        command line.</span>
436
437
438<span class="sd">    Return</span>
439<span class="sd">    ------</span>
440
441<span class="sd">    &#39;&#39;&#39;</span>
442
443    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">and</span> \
444       <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">_config</span><span class="o">.</span><span class="n">INSTALL_TARGETS</span><span class="p">:</span>
445        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: unknown or missing installation target &#39;</span><span class="p">)</span>
446        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;target: &#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
447        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;please specify correct installation target &#39;</span> <span class="o">+</span>
448              <span class="nb">str</span><span class="p">(</span><span class="n">INSTALL_TARGETS</span><span class="p">))</span>
449        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;use -h or --help for help&#39;</span><span class="p">)</span>
450        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
451
452    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="ow">and</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">!=</span> <span class="s1">&#39;local&#39;</span><span class="p">:</span>
453        <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span> <span class="ow">or</span> \
454           <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span> <span class="ow">or</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">:</span>
455            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Please enter your ECMWF user id and group id as well &#39;</span> <span class="o">+</span>
456                  <span class="s1">&#39;as the </span><span class="se">\n</span><span class="s1">name of the local gateway and the ectrans &#39;</span> <span class="o">+</span>
457                  <span class="s1">&#39;destination &#39;</span><span class="p">)</span>
458            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;with command line options --ecuid --ecgid </span><span class="se">\</span>
459<span class="s1">                   --gateway --destination&#39;</span><span class="p">)</span>
460            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Try &quot;&#39;</span> <span class="o">+</span> <span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> \
461                  <span class="s1">&#39; -h&quot; to print usage information&#39;</span><span class="p">)</span>
462            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Please consult ecaccess documentation or ECMWF user </span><span class="se">\</span>
463<span class="s1">                   support for further details&#39;</span><span class="p">)</span>
464            <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
465
466        <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">:</span>
467            <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="s1">&#39;$</span><span class="si">{HOME}</span><span class="s1">&#39;</span>
468    <span class="k">else</span><span class="p">:</span> <span class="c1"># local</span>
469        <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">:</span>
470            <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span>
471
472    <span class="k">return</span></div>
473
474
475<div class="viewcode-block" id="mk_tarball"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_tarball">[docs]</a><span class="k">def</span> <span class="nf">mk_tarball</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="n">target</span><span class="p">):</span>
476    <span class="sd">&#39;&#39;&#39;Creates a tarball with all necessary files which need to be sent to the</span>
477<span class="sd">    installation directory.</span>
478<span class="sd">    It does not matter if this is local or remote.</span>
479<span class="sd">    Collects all python files, the Fortran source and makefiles,</span>
480<span class="sd">    the ECMWF_ENV file, the CONTROL files as well as the</span>
481<span class="sd">    template files.</span>
482
483<span class="sd">    Parameters</span>
484<span class="sd">    ----------</span>
485<span class="sd">    tarball_path : str</span>
486<span class="sd">        The complete path to the tar file which will contain all</span>
487<span class="sd">        relevant data for flex_extract.</span>
488
489<span class="sd">    target : str</span>
490<span class="sd">        The queue where the job is submitted to.</span>
491
492<span class="sd">    Return</span>
493<span class="sd">    ------</span>
494
495<span class="sd">    &#39;&#39;&#39;</span>
496    <span class="kn">from</span> <span class="nn">glob</span> <span class="k">import</span> <span class="n">glob</span>
497
498    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Create tarball ...&#39;</span><span class="p">)</span>
499
500    <span class="c1"># change to FLEXEXTRACT directory so that the tar can contain</span>
501    <span class="c1"># relative pathes to the files and directories</span>
502    <span class="n">ecd</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span>
503    <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">ecd</span><span class="p">)</span>
504
505    <span class="c1"># get lists of the files to be added to the tar file</span>
506    <span class="k">if</span> <span class="n">target</span> <span class="o">==</span> <span class="s1">&#39;local&#39;</span><span class="p">:</span>
507        <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[]</span>
508        <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
509                   <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
510                                     <span class="s1">&#39;run_local.sh&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
511    <span class="k">else</span><span class="p">:</span>
512        <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_ECMWF_ENV</span><span class="p">]</span>
513        <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
514                       <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
515                                         <span class="s1">&#39;run.sh&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
516
517    <span class="n">pyfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
518               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
519    <span class="n">pytestfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
520               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHONTEST_SRC</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
521    <span class="n">controlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
522                    <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_CONTROLFILES</span><span class="p">,</span>
523                                      <span class="s1">&#39;CONTROL*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
524    <span class="n">testfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
525                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span> <span class="p">,</span> <span class="s1">&#39;*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
526    <span class="n">tempfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
527                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*.temp&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
528    <span class="n">nlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
529                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*.nl&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
530    <span class="n">gribtable</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
531                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*grib*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
532    <span class="n">ffiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
533              <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.f*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
534    <span class="n">hfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
535              <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.h&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
536    <span class="n">makefiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
537                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;Makefile*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
538    <span class="n">jobdir</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">]</span>
539
540    <span class="c1"># concatenate single lists to one for a better looping</span>
541    <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">nlfiles</span> <span class="o">+</span> \
542               <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ECMWF_ENV_FILE</span> <span class="o">+</span> \
543               <span class="n">runfile</span> <span class="o">+</span> <span class="n">jobdir</span> <span class="o">+</span> <span class="n">testfiles</span> <span class="o">+</span>\
544               <span class="p">[</span><span class="s1">&#39;CODE_OF_CONDUCT.md&#39;</span><span class="p">,</span> <span class="s1">&#39;LICENSE.md&#39;</span><span class="p">,</span> <span class="s1">&#39;README.md&#39;</span><span class="p">]</span>
545
546    <span class="c1"># create installation tar-file</span>
547    <span class="n">exclude_files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.ksh&quot;</span><span class="p">]</span>
548    <span class="k">try</span><span class="p">:</span>
549        <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="s2">&quot;w:gz&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span>
550            <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">filelist</span><span class="p">:</span>
551                <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">file</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
552                               <span class="nb">filter</span><span class="o">=</span><span class="k">lambda</span> <span class="n">tarinfo</span><span class="p">:</span> <span class="kc">None</span>
553                                      <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">tarinfo</span><span class="o">.</span><span class="n">name</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
554                                         <span class="ow">in</span> <span class="n">exclude_files</span>
555                                      <span class="k">else</span> <span class="n">tarinfo</span><span class="p">)</span>
556    <span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
557        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to create the tar-file &#39;</span> <span class="o">+</span>
558                     <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
559
560    <span class="k">return</span></div>
561
562
563<div class="viewcode-block" id="un_tarball"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.un_tarball">[docs]</a><span class="k">def</span> <span class="nf">un_tarball</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">):</span>
564    <span class="sd">&#39;&#39;&#39;Extracts the given tarball into current directory.</span>
565
566<span class="sd">    Parameters</span>
567<span class="sd">    ----------</span>
568<span class="sd">    tarball_path : str</span>
569<span class="sd">        The complete path to the tar file which will contain all</span>
570<span class="sd">        relevant data for flex_extract.</span>
571
572<span class="sd">    Return</span>
573<span class="sd">    ------</span>
574
575<span class="sd">    &#39;&#39;&#39;</span>
576
577    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Untar ...&#39;</span><span class="p">)</span>
578
579    <span class="k">try</span><span class="p">:</span>
580        <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span>
581            <span class="n">tar_handle</span><span class="o">.</span><span class="n">extractall</span><span class="p">()</span>
582    <span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
583        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file &#39;</span> <span class="o">+</span>
584                     <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
585    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
586        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
587        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
588
589        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file &#39;</span> <span class="o">+</span>
590                 <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
591
592    <span class="k">return</span></div>
593
594<div class="viewcode-block" id="mk_env_vars"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_env_vars">[docs]</a><span class="k">def</span> <span class="nf">mk_env_vars</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">gateway</span><span class="p">,</span> <span class="n">destination</span><span class="p">):</span>
595    <span class="sd">&#39;&#39;&#39;Creates a file named ECMWF_ENV which contains the</span>
596<span class="sd">    necessary environmental variables at ECMWF servers.</span>
597<span class="sd">    It is based on the template ECMWF_ENV.template.</span>
598
599<span class="sd">    Parameters</span>
600<span class="sd">    ----------</span>
601<span class="sd">    ecuid : str</span>
602<span class="sd">        The user id on ECMWF server.</span>
603
604<span class="sd">    ecgid : str</span>
605<span class="sd">        The group id on ECMWF server.</span>
606
607<span class="sd">    gateway : str</span>
608<span class="sd">        The gateway server the user is using.</span>
609
610<span class="sd">    destination : str</span>
611<span class="sd">        The remote destination which is used to transfer files</span>
612<span class="sd">        from ECMWF server to local gateway server.</span>
613
614<span class="sd">    Return</span>
615<span class="sd">    ------</span>
616
617<span class="sd">    &#39;&#39;&#39;</span>
618    <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span>
619    <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span>  <span class="n">TemplateLoader</span>
620    <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span> <span class="n">UndefinedError</span>
621
622    <span class="k">try</span><span class="p">:</span>
623        <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
624        <span class="n">ecmwfvars_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_USER_ENVVARS</span><span class="p">,</span>
625                                         <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
626
627        <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
628                                             <span class="n">user_group</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
629                                             <span class="n">gateway_name</span> <span class="o">=</span> <span class="n">gateway</span><span class="p">,</span>
630                                             <span class="n">destination_name</span> <span class="o">=</span> <span class="n">destination</span>
631                                             <span class="p">)</span>
632    <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
633        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
634
635        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
636                 <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span>
637    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
638        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
639        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
640
641        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
642                 <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span>
643
644    <span class="k">try</span><span class="p">:</span>
645        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
646            <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
647    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
648        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
649        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
650
651        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to write &#39;</span> <span class="o">+</span>
652                 <span class="n">_config</span><span class="o">.</span><span class="n">PATH_ECMWF_ENV</span><span class="p">)</span>
653
654    <span class="k">return</span></div>
655
656<div class="viewcode-block" id="mk_compilejob"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_compilejob">[docs]</a><span class="k">def</span> <span class="nf">mk_compilejob</span><span class="p">(</span><span class="n">makefile</span><span class="p">,</span> <span class="n">target</span><span class="p">,</span> <span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
657    <span class="sd">&#39;&#39;&#39;Modifies the original job template file so that it is specified</span>
658<span class="sd">    for the user and the environment were it will be applied. Result</span>
659<span class="sd">    is stored in a new file &quot;job.temp&quot; in the python directory.</span>
660
661<span class="sd">    Parameters</span>
662<span class="sd">    ----------</span>
663<span class="sd">    makefile : str</span>
664<span class="sd">        Name of the makefile which should be used to compile FORTRAN</span>
665<span class="sd">        CONVERT2 program.</span>
666
667<span class="sd">    target : str</span>
668<span class="sd">        The target where the installation should be done, e.g. the queue.</span>
669
670<span class="sd">    ecuid : str</span>
671<span class="sd">        The user id on ECMWF server.</span>
672
673<span class="sd">    ecgid : str</span>
674<span class="sd">        The group id on ECMWF server.</span>
675
676<span class="sd">    fp_root : str</span>
677<span class="sd">       Path to the root directory of FLEXPART environment or flex_extract</span>
678<span class="sd">       environment.</span>
679
680<span class="sd">    Return</span>
681<span class="sd">    ------</span>
682
683<span class="sd">    &#39;&#39;&#39;</span>
684    <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span>
685    <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span>  <span class="n">TemplateLoader</span>
686    <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span>  <span class="n">UndefinedError</span>
687
688    <span class="k">if</span> <span class="n">fp_root</span> <span class="o">==</span> <span class="s1">&#39;../&#39;</span><span class="p">:</span>
689        <span class="n">fp_root</span> <span class="o">=</span> <span class="s1">&#39;$HOME&#39;</span>
690
691    <span class="k">try</span><span class="p">:</span>
692        <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
693        <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">,</span>
694                                       <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
695
696        <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
697            <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
698            <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
699            <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
700            <span class="n">fp_root_scripts</span> <span class="o">=</span> <span class="n">fp_root</span><span class="p">,</span>
701            <span class="n">makefile</span> <span class="o">=</span> <span class="n">makefile</span><span class="p">,</span>
702            <span class="n">fortran_program</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span>
703        <span class="p">)</span>
704    <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
705        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
706
707        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
708                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">)</span>
709    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
710        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
711        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
712
713        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
714                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_COMPILEJOB</span><span class="p">)</span>
715
716    <span class="k">try</span><span class="p">:</span>
717        <span class="n">compilejob</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span>
718                                  <span class="n">_config</span><span class="o">.</span><span class="n">FILE_INSTALL_COMPILEJOB</span><span class="p">)</span>
719
720        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">compilejob</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
721            <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
722    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
723        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
724        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
725
726        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to write &#39;</span> <span class="o">+</span>
727                 <span class="n">compilejob</span><span class="p">)</span>
728
729    <span class="k">return</span></div>
730
731<div class="viewcode-block" id="mk_job_template"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_job_template">[docs]</a><span class="k">def</span> <span class="nf">mk_job_template</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">gateway</span><span class="p">,</span> <span class="n">destination</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
732    <span class="sd">&#39;&#39;&#39;Modifies the original job template file so that it is specified</span>
733<span class="sd">    for the user and the environment were it will be applied. Result</span>
734<span class="sd">    is stored in a new file.</span>
735
736<span class="sd">    Parameters</span>
737<span class="sd">    ----------</span>
738<span class="sd">    ecuid : str</span>
739<span class="sd">        The user id on ECMWF server.</span>
740
741<span class="sd">    ecgid : str</span>
742<span class="sd">        The group id on ECMWF server.</span>
743
744<span class="sd">    gateway : str</span>
745<span class="sd">        The gateway server the user is using.</span>
746
747<span class="sd">    destination : str</span>
748<span class="sd">        The remote destination which is used to transfer files</span>
749<span class="sd">        from ECMWF server to local gateway server.</span>
750
751<span class="sd">    fp_root : str</span>
752<span class="sd">       Path to the root directory of FLEXPART environment or flex_extract</span>
753<span class="sd">       environment.</span>
754
755<span class="sd">    Return</span>
756<span class="sd">    ------</span>
757
758<span class="sd">    &#39;&#39;&#39;</span>
759    <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span>
760    <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span>  <span class="n">TemplateLoader</span>
761    <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span>  <span class="n">UndefinedError</span>
762
763    <span class="n">fp_root_path_to_python</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">fp_root</span><span class="p">,</span>
764                                          <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
765                                          <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">)</span>
766    <span class="k">if</span> <span class="s1">&#39;$&#39;</span> <span class="ow">in</span> <span class="n">fp_root_path_to_python</span><span class="p">:</span>
767        <span class="n">ind</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;$&#39;</span><span class="p">)</span>
768        <span class="n">fp_root_path_to_python</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">ind</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;$&#39;</span> <span class="o">+</span> \
769                                 <span class="n">fp_root_path_to_python</span><span class="p">[</span><span class="n">ind</span><span class="p">:]</span>
770
771    <span class="k">try</span><span class="p">:</span>
772        <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
773        <span class="n">compile_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">,</span>
774                                       <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
775
776        <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
777            <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
778            <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
779            <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
780            <span class="n">fp_root_path</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">,</span>
781        <span class="p">)</span>
782    <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
783        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
784
785        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
786                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">)</span>
787    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
788        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
789        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
790
791        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to generate template &#39;</span> <span class="o">+</span>
792                 <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_INSTALL_JOB</span><span class="p">)</span>
793
794
795    <span class="k">try</span><span class="p">:</span>
796        <span class="n">tempjobfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span>
797                                   <span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_JOB</span><span class="p">)</span>
798
799        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">tempjobfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
800            <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">))</span>
801    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
802        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
803        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
804
805        <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to write &#39;</span> <span class="o">+</span>
806                 <span class="n">tempjobfile</span><span class="p">)</span>
807
808    <span class="k">return</span></div>
809
810<div class="viewcode-block" id="del_convert_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.del_convert_build">[docs]</a><span class="k">def</span> <span class="nf">del_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span>
811    <span class="sd">&#39;&#39;&#39;Clean up the Fortran source directory and remove all</span>
812<span class="sd">    build files (e.g. \*.o, \*.mod and CONVERT2)</span>
813
814<span class="sd">    Parameters</span>
815<span class="sd">    ----------</span>
816<span class="sd">    src_path : str</span>
817<span class="sd">        Path to the fortran source directory.</span>
818
819<span class="sd">    Return</span>
820<span class="sd">    ------</span>
821
822<span class="sd">    &#39;&#39;&#39;</span>
823
824    <span class="n">modfiles</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="s1">&#39;*.mod&#39;</span><span class="p">)</span>
825    <span class="n">objfiles</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="s1">&#39;*.o&#39;</span><span class="p">)</span>
826    <span class="n">exefile</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)</span>
827
828    <span class="n">modfiles</span><span class="o">.</span><span class="n">delete_files</span><span class="p">()</span>
829    <span class="n">objfiles</span><span class="o">.</span><span class="n">delete_files</span><span class="p">()</span>
830    <span class="n">exefile</span><span class="o">.</span><span class="n">delete_files</span><span class="p">()</span>
831
832    <span class="k">return</span></div>
833
834<div class="viewcode-block" id="mk_convert_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_convert_build">[docs]</a><span class="k">def</span> <span class="nf">mk_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span>
835    <span class="sd">&#39;&#39;&#39;Compiles the Fortran code and generates the executable.</span>
836
837<span class="sd">    Parameters</span>
838<span class="sd">    ----------</span>
839<span class="sd">    src_path : str</span>
840<span class="sd">        Path to the fortran source directory.</span>
841
842<span class="sd">    makefile : str</span>
843<span class="sd">        The name of the makefile which should be used.</span>
844
845<span class="sd">    Return</span>
846<span class="sd">    ------</span>
847
848<span class="sd">    &#39;&#39;&#39;</span>
849
850    <span class="k">try</span><span class="p">:</span>
851        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Using makefile: &#39;</span> <span class="o">+</span> <span class="n">makefile</span><span class="p">)</span>
852        <span class="n">p</span> <span class="o">=</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">Popen</span><span class="p">([</span><span class="s1">&#39;make&#39;</span><span class="p">,</span> <span class="s1">&#39;-f&#39;</span><span class="p">,</span>
853                              <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">)],</span>
854                             <span class="n">stdin</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span>
855                             <span class="n">stdout</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span>
856                             <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span>
857                             <span class="n">bufsize</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
858        <span class="n">pout</span><span class="p">,</span> <span class="n">perr</span> <span class="o">=</span> <span class="n">p</span><span class="o">.</span><span class="n">communicate</span><span class="p">()</span>
859        <span class="nb">print</span><span class="p">(</span><span class="n">pout</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
860        <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">returncode</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
861            <span class="nb">print</span><span class="p">(</span><span class="n">perr</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
862            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Please edit &#39;</span> <span class="o">+</span> <span class="n">makefile</span> <span class="o">+</span>
863                  <span class="s1">&#39; or try another Makefile in the src directory.&#39;</span><span class="p">)</span>
864            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Most likely GRIB_API_INCLUDE_DIR, GRIB_API_LIB &#39;</span>
865                  <span class="s1">&#39;and EMOSLIB must be adapted.&#39;</span><span class="p">)</span>
866            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Available Makefiles:&#39;</span><span class="p">)</span>
867            <span class="nb">print</span><span class="p">(</span><span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="s1">&#39;Makefile*&#39;</span><span class="p">))</span>
868            <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;Compilation failed!&#39;</span><span class="p">)</span>
869    <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
870        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Makefile call failed:&#39;</span><span class="p">)</span>
871        <span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
872    <span class="k">else</span><span class="p">:</span>
873        <span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">&#39;ls&#39;</span><span class="p">,</span> <span class="s1">&#39;-l&#39;</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span>
874                            <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span> <span class="n">error_msg</span><span class="o">=</span>
875                           <span class="s1">&#39;FORTRAN EXECUTABLE COULD NOT BE FOUND!&#39;</span><span class="p">)</span>
876
877    <span class="k">return</span></div>
878
879
880<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
881    <span class="n">main</span><span class="p">()</span>
882</pre></div>
883
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888 
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895
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