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66                7.1.2
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91<ul class="current">
92<li class="toctree-l1"><a class="reference internal" href="../ecmwf_data.html">ECMWF Data</a></li>
93<li class="toctree-l1 current"><a class="reference internal" href="../installation.html">Installation</a><ul class="current">
94<li class="toctree-l2"><a class="reference internal" href="../installation.html#registration-at-ecmwf">Registration at ECMWF</a></li>
95<li class="toctree-l2"><a class="reference internal" href="../installation.html#accept-licences-for-public-datasets">Accept licences for public datasets</a></li>
96<li class="toctree-l2"><a class="reference internal" href="../installation.html#download-flex-extract">Download <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code></a></li>
97<li class="toctree-l2"><a class="reference internal" href="../installation.html#dependencies">Dependencies</a></li>
98<li class="toctree-l2 current"><a class="reference internal" href="../installation.html#installation-of-flex-extract">Installation of <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code></a><ul class="current">
99<li class="toctree-l3 current"><a class="current reference internal" href="#">Remote mode installation</a><ul>
100<li class="toctree-l4"><a class="reference internal" href="#remote-mode-dependencies">Remote mode - dependencies</a></li>
101<li class="toctree-l4"><a class="reference internal" href="#prepare-remote-environment">Prepare remote environment</a></li>
102<li class="toctree-l4"><a class="reference internal" href="#remote-installation">Remote installation</a></li>
103</ul>
104</li>
105<li class="toctree-l3"><a class="reference internal" href="gateway.html">Gateway mode installation</a></li>
106<li class="toctree-l3"><a class="reference internal" href="local.html">Local mode installation</a></li>
107</ul>
108</li>
109<li class="toctree-l2"><a class="reference internal" href="../installation.html#flex-extract-in-combination-with-flexpart"><code class="docutils literal notranslate"><span class="pre">Flex_extract</span></code> in combination with <code class="docutils literal notranslate"><span class="pre">FLEXPART</span></code></a></li>
110<li class="toctree-l2"><a class="reference internal" href="../installation.html#test-installation">Test installation</a></li>
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187  <div class="section" id="remote-mode-installation">
188<h1>Remote mode installation<a class="headerlink" href="#remote-mode-installation" title="Permalink to this headline"></a></h1>
189<div class="toctree-wrapper compound">
190</div>
191<div class="section" id="remote-mode-dependencies">
192<span id="ref-req-remote"></span><span id="ref-remote-mode"></span><h2>Remote mode - dependencies<a class="headerlink" href="#remote-mode-dependencies" title="Permalink to this headline"></a></h2>
193<p>The following software is required, and already available at the ECMWF servers:</p>
194<table class="docutils align-default">
195<colgroup>
196<col style="width: 61%" />
197<col style="width: 39%" />
198</colgroup>
199<tbody>
200<tr class="row-odd"><td><p>Python code</p></td>
201<td><p>Fortran code</p></td>
202</tr>
203<tr class="row-even"><td><ul class="simple">
204<li><p><a class="reference external" href="https://www.python.org/downloads/">Python3</a></p></li>
205<li><p><a class="reference external" href="http://www.numpy.org/">numpy</a></p></li>
206<li><p><a class="reference external" href="https://genshi.edgewall.org/">genshi</a></p></li>
207<li><p><a class="reference external" href="https://packages.debian.org/sid/python3-eccodes">eccodes for python</a></p></li>
208</ul>
209</td>
210<td><ul class="simple">
211<li><p><a class="reference external" href="https://gcc.gnu.org/wiki/GFortran">gfortran</a></p></li>
212<li><p><a class="reference external" href="http://www.fftw.org">fftw3</a></p></li>
213<li><p><a class="reference external" href="https://software.ecmwf.int/wiki/display/ECC">eccodes</a></p></li>
214<li><p><a class="reference external" href="https://software.ecmwf.int/wiki/display/EMOS/Emoslib">emoslib</a></p></li>
215</ul>
216</td>
217</tr>
218</tbody>
219</table>
220</div>
221<div class="section" id="prepare-remote-environment">
222<span id="ref-prep-remote"></span><h2>Prepare remote environment<a class="headerlink" href="#prepare-remote-environment" title="Permalink to this headline"></a></h2>
223<p>ECMWF servers provide all libraries via a module system. Loading the required modules is already built into <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code> and no user action is needed.</p>
224</div>
225<div class="section" id="remote-installation">
226<span id="ref-install-remote"></span><h2>Remote installation<a class="headerlink" href="#remote-installation" title="Permalink to this headline"></a></h2>
227<p>First, log in on one of the ECMWF servers, such as <em>ecgate</em> or <em>cca/ccb</em>.
228Substitute <em>&lt;ecuid&gt;</em> with your ECMWF user name:</p>
229<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>ssh -X &lt;ecuid&gt;@ecaccess.ecmwf.int
230</pre></div>
231</div>
232<p>This will lead to the following output on the command line, asking for your password:</p>
233<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>Authorized access only.
234
235***************************************************************
236   For further information, read the ECaccess documentation at:
237
238   https://software.ecmwf.int/wiki/display/ECAC/ECaccess+Home
239
240   You can also use ECaccess to load &amp; download files from your
241   EChome, ECscratch or ECfs directories using the ECaccess FTP
242   server:
243
244   ftp://uid@ecaccess.ecmwf.int/
245
246   Please note you must use your UID and ActivID code to login!
247***************************************************************
248
249&lt;ecuid&gt;@&lt;ipname/address&gt;&#39;s password: ***
250Select hostname (ecgate, cca, ccb) [ecgate]: ecgate
251
252[&lt;ecuid&gt;@ecgb11 ~]$
253</pre></div>
254</div>
255<p>Substitute the <em>&lt;localuser&gt;</em> and <em>&lt;localmachine.tld&gt;</em> placeholders with your local user name and the IP name or address of your local machine.
256Untar the file and change into the <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code> root directory.</p>
257<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>scp &lt;localuser&gt;@&lt;localmachine.tld&gt;:&lt;/path/to/tarfile/&gt;flex_extract_vX.X.tar.gz  <span class="nv">$HOME</span>/
258<span class="nb">cd</span> <span class="nv">$HOME</span>
259tar xvf flex_extract_vX.X.tar.gz
260<span class="nb">cd</span> flex_extract_vX.X
261</pre></div>
262</div>
263<p>Execute the <code class="docutils literal notranslate"><span class="pre">setup.sh</span></code> script from the <code class="docutils literal notranslate"><span class="pre">flex_extract</span></code>’s root directory.
264Before executing it, it is necessary to adapt some parameters from <code class="docutils literal notranslate"><span class="pre">setup.sh</span></code>
265described in <a class="reference internal" href="../Documentation/Input/setup.html"><span class="doc">The installation script - setup.sh</span></a>.</p>
266<p>Open <code class="docutils literal notranslate"><span class="pre">setup.sh</span></code> with your preferred editor (e.g., nano) and adapt the values:</p>
267<table class="docutils align-default">
268<colgroup>
269<col style="width: 50%" />
270<col style="width: 50%" />
271</colgroup>
272<tbody>
273<tr class="row-odd"><td><p>Use this for target = <strong>ectrans</strong></p></td>
274<td><p>Use this for target = <strong>cca</strong> or <strong>ccb</strong></p></td>
275</tr>
276<tr class="row-even"><td><div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>...
277<span class="c1"># -----------------------------------------</span>
278<span class="c1"># AVAILABLE COMMANDLINE ARGUMENTS TO SET</span>
279<span class="c1">#</span>
280<span class="c1"># THE USER HAS TO SPECIFY THESE PARAMETER</span>
281<span class="c1">#</span>
282<span class="nv">TARGET</span><span class="o">=</span><span class="s1">&#39;ecgate&#39;</span>
283<span class="nv">MAKEFILE</span><span class="o">=</span><span class="s1">&#39;makefile_ecgate&#39;</span>
284<span class="nv">ECUID</span><span class="o">=</span><span class="s1">&#39;&lt;username&gt;&#39;</span>
285<span class="nv">ECGID</span><span class="o">=</span><span class="s1">&#39;&lt;groupID&gt;&#39;</span>
286<span class="nv">GATEWAY</span><span class="o">=</span><span class="s1">&#39;&lt;gatewayname&gt;&#39;</span>
287<span class="nv">DESTINATION</span><span class="o">=</span><span class="s1">&#39;&lt;username&gt;@genericSftp&#39;</span>
288<span class="nv">INSTALLDIR</span><span class="o">=</span>None
289<span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">&#39;installscript.template&#39;</span>
290<span class="nv">CONTROLFILE</span><span class="o">=</span><span class="s1">&#39;CONTROL_EA5&#39;</span>
291...
292</pre></div>
293</div>
294</td>
295<td><div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>...
296<span class="c1"># -----------------------------------------</span>
297<span class="c1"># AVAILABLE COMMANDLINE ARGUMENTS TO SET</span>
298<span class="c1">#</span>
299<span class="c1"># THE USER HAS TO SPECIFY THESE PARAMETER</span>
300<span class="c1">#</span>
301<span class="nv">TARGET</span><span class="o">=</span><span class="s1">&#39;cca&#39;</span>
302<span class="nv">MAKEFILE</span><span class="o">=</span><span class="s1">&#39;makefile_cray&#39;</span>
303<span class="nv">ECUID</span><span class="o">=</span><span class="s1">&#39;&lt;username&gt;&#39;</span>
304<span class="nv">ECGID</span><span class="o">=</span><span class="s1">&#39;&lt;groupID&gt;&#39;</span>
305<span class="nv">GATEWAY</span><span class="o">=</span><span class="s1">&#39;&lt;gatewayname&gt;&#39;</span>
306<span class="nv">DESTINATION</span><span class="o">=</span><span class="s1">&#39;&lt;username&gt;@genericSftp&#39;</span>
307<span class="nv">INSTALLDIR</span><span class="o">=</span><span class="s1">&#39;&#39;</span>
308<span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">&#39;installscript.template&#39;</span>
309<span class="nv">CONTROLFILE</span><span class="o">=</span><span class="s1">&#39;CONTROL_EA5&#39;</span>
310...
311</pre></div>
312</div>
313</td>
314</tr>
315</tbody>
316</table>
317<p><span class="underline">Please substitute the values of ECUID and ECGID
318with your own ones (look at any of your files with ``ls -l’’ to see uid and gid).</span></p>
319<div class="admonition note">
320<p class="admonition-title">Note</p>
321<p>If a local gateway server is available, files can be transferred with <code class="docutils literal notranslate"><span class="pre">ECaccess</span></code> commands. In that case, a valid <em>GATEWAY</em> and <em>DESTINATION</em> have to be present in the <code class="docutils literal notranslate"><span class="pre">setup.sh</span></code> file (even if not used, the lines must not be deleted).</p>
322</div>
323<p>Afterwards, type:</p>
324<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>./setup.sh
325</pre></div>
326</div>
327<p>to start the installation. You should see the following on standard output.</p>
328<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Output of setup.sh</span>
329Create tarball ...
330Job compilation script has been submitted to ecgate <span class="k">for</span> installation in <span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_vX.X
331You should get an email with subject <span class="s2">&quot;flexcompile&quot;</span> within the next few minutes!
332</pre></div>
333</div>
334<p><code class="docutils literal notranslate"><span class="pre">Flex_extract</span></code> automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a “SUCCESS” statement in the last line:</p>
335<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./rwgrib2.f90
336gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./phgrreal.f90
337gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./grphreal.f90
338gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./ftrafo.f90
339gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./calc_etadot.f90
340gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./posnam.f90
341gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
342ln -sf calc_etadot_fast.out calc_etadot
343lrwxrwxrwx. <span class="m">1</span> &lt;username&gt; at <span class="m">20</span> Mar  <span class="m">8</span> <span class="m">14</span>:11 calc_etadot -&gt; calc_etadot_fast.out
344SUCCESS!
345</pre></div>
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