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Ticket Resolution Summary Owner Reporter
#290 fixed How can i get trajectory output from FLEXPART 10.4 xu_ru
Description

Hi, everyone, I have run a case using CEAR-20 datasets, but i can only get grid_con* result, not the 'trajectory' file. I have checked again and again for the settings in COMMAND file. But i can not find how to set the parameters to get trajectory. Is there anyone who knows how to obtain the trajectory output file.

#289 fixed Why the output file is rectangle (the extent is same as the release box) pesei xu_ru
Description

Hi, everyone. It seems i have successufly execute a simple case as the 'Congratulations’has appeared (FLEXPART10.4). However, the grid_conc* file is rectangle, not the same as previous study that spread far away. The COMMAND file and RELEASE file set correctly.

#288 fixed Installation and examples for flexpart-wrf v.3.3.2 ignacio fkleinert
Description

I am trying to install flexpart-wrf v3.3.2 but have some difficulties to run the examples provided in the source code. I plan to use the hybrid MPI-OpenMP version on a HPC system. To familiarise my self with wrf-flexpart (I do not have worked with flexpart-wrf nor flexpart before), I started with the serial version. After including the NetCDF-Fortran path makefilie.mom I used make -f makefile.mom serial to compile the serial version. The executable flexwrf33_gnu_serial is succeesfully created, however I got the following warnings during compilation:

netcdf_output_mod.F90:1619:70:

 1617 |         do jy=0,grid_ny-1
      |                         2                                             
 1618 |           do ix=0,grid_nx-1
 1619 |             grid3(ix,jy,kz,kp,nage)= 1.e12*grid(ix,jy,kz)/grid_vol(ix,jy,kz)/outnum*  &
      |                                                                      1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
netcdf_output_mod.F90:1619:67:

 1618 |           do ix=0,grid_nx-1
      |                           2                                        
 1619 |             grid3(ix,jy,kz,kp,nage)= 1.e12*grid(ix,jy,kz)/grid_vol(ix,jy,kz)/outnum*  &
      |                                                                   1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2)
random.f90:68:14:

   68 | 1   v1=2.*ran3(idum)-1.
      |              1
Warning: Missing actual argument for argument ‘inext’ at (1)
random.f90:69:14:

   69 |     v2=2.*ran3(idum)-1.
      |              1
Warning: Missing actual argument for argument ‘inext’ at (1)
verttransform.f90:769:24:

  769 |       do 100 ix=0,nxmin1
      |                        1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
verttransform_nests.f90:442:27:

  442 |        do 100 ix=0,nxn(l)-1
      |                           1
Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1)
readinput.f90:118:0:

  118 |   if (path(numpath+2*(i-1)+1)(1:5).ne.'=====') then
      | 
Warning: ‘__builtin_memcmp_eq’ reading 5 bytes from a region of size 0 [-Wstringop-overflow=]

Are there any fixes for this?

After compilation, I tried to run one of the examples in examples/. As I could not find any data/ directory related to v3.3.2, I downloaded the 'WRF input files' (Wrfdata/), from flexpart-wrf version 3.1. Moreover, I adopted the following lines in flexwrf.input.forward1:

  • In the 'Former Pathnames File' section (all paths are absolute paths)
    • Output directory (directory already exists)
    • Path to meteo input data (Wrfdata)
    • Location of the AVAILABLE2 file
  • In the 'Former Command File' section:
    • Set SFC_OPTION to zero (as mentioned in #271)

Running ./flexwrf33_gnu_serial flexwrf.input.forward1 yields

 the input file used is flexwrf.input.forward1                                                                                                                                                                               
 Pre-generating random numbers
 Calling readinput
 Opening 'flexwrf.input.forward1                                                                                                                                                                               ' for reading
 Reading pathnames
 option_verbose=         100
              ----------------               
  INFORMATION: SUBGRIDSCALE TERRAIN EFFECT IS
  NOT PARAMETERIZED DURING THIS SIMULATION.  
              ----------------               
 SFC_OPTION =           0
 nageclass           2
 Opening file: /p/project/deepacf/intelliaq/kleinert1/flexpart-wrf_ticket-test/Src_flexwrf_v3.3.2/examples/AVAILABLE2 for reading
 readinput() calling gridcheck()

test_xyindex_to_ll_wrf calling map_set -- map_proj_id, map_set_proj_code =    1    3

test_xyindex_to_ll_wrf -- lgrid, rmserr (km) =  0  1.22E-03



# of vertical levels in WRF data
    n_bottom_top & "true" nuvz:     59     59
    nwz &     "augmented" nuvz:     60     60

    nwzmax, nuvzmax, nzmax    :     61     61     61
    nconvlevmax, nconvlev     :     60     58
    nx, ny, nxmax, nymax      :    180    180    250    190

Mother domain:
  east-west   range:        0.0  2148000.0   Grid distance:    12000.0
  south-north range:        0.0  2148000.0   Grid distance:    12000.0

 readinput() calling gridcheck_nests()
 Reading OUTGRID

readoutgrid diagnostics
xtmp1, ytmp1 (in) -1.2300000000E+02  3.8000000000E+01
xtmp2, ytmp2 (in) -1.2000000000E+02  4.1500000000E+01
out_xm0, out_ym0   3.6903406250E+05  1.0307651250E+06
dxout,   dyout     1.4537512695E+04  1.0897026367E+04
 Reading OUTGRID nest

readoutgrid_nest diagnostics
xtmp1, ytmp1  (in) -1.2300000000E+02  3.8000000000E+01
xtmp2, ytmp2  (in) -1.2000000000E+02  4.1500000000E+01
out_xm0n, out_ym0n  3.6903406250E+05  1.0307651250E+06
dxoutn,   dyoutn    1.4537512695E+04  1.0897026367E+04
 Reading RECEPTORS
 Reading SPECIES
 option_verbose:         100
 option_verbose:         100
 Reading RELEASES
 nspec =            2
 emitvar =            0
 Reading species:           1 of           2
 Reading species:           2 of           2
  Releasepoints allocated:            2
 numpoint =           2
 release location=           1
 COMPOINT = "box1              NAME OF RELEASE LOCATI
 release location=           2
 COMPOINT = "box2                                    
 maxpart2      110000           0
 alloc part      110000      110000           0
 Main: Old IGBP data will be used for land use categories
  #### FLEXPART ERROR! FILE CONTAINING          ####
  #### RELATION LANDUSE,z0 DOES NOT EXIST       ####
  #### IT IS NEEDED FOR DRY DEPOSITION          ####
  #### COPY DATA FROM src_flexwrf_v3.0/data     ####
  #### IN YOUR CURRENT DIRECTORY                ####
  #### OR USE A DIFFERENT SPECIES               ####

which seems to be related to the dry deposition of Cs-137. The IGBP_int1.dat file is located in the Wrfdata/ directory (LU_OPTION is set to zero as given by default). I also copied this file as well as the executable into the examples/dir.

Is this error related to some changes between flexpart-wrf versions 3.1 and 3.3.2? Are the example input data from version 3.1 outdated, if so are there new example data?

For simplicity, I replaced the Cs-137 with a second air tracer to omit the deposition. This, however, results in a Richardson failure. In #242 daliaga supposed to uncomment some lines in readwind.f90, and readwind_nests.f90 which finally resulted in a complete serial forward model run after recompilation (make -f makefile.mom [clean, serial]). Both, the forward1 and die backward1 example showing the following warning WARNING: No (or incomplete) flux data contained in WRF output file wrfout_d02_2010-05-18_00.nc but did not crash. I am therefore unsure if this is related to #233.

Can you confirm that the steps mentioned above are adequate to test the installation of flexpart-wrf v3.3.2 for the serial and omp mode?

Before continuing with the hybrid-mode, I thought it might be good to clarify all the issues mentioned above to ensure that they won't cause any additional issues later on. I already saw that I might have to include the MPI_ROOT path into makefile.mom for compilation.

Thank you in advance for your answer and best regards!

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