Changeset eca358d in flex_extract.git

Timestamp:

Feb 1, 2020, 9:32:17 PM (4 years ago)

Author:

Anne Philipp <anne.philipp@…>

Branches:

master, ctbto, dev

Children:

072cbea

Parents:

53d3b2a

Message:

updated online documentation with links on index page

Files:

• Documentation/html/Documentation/Api/api_python.html (modified) (35 diffs)
• Documentation/html/Documentation/Input/run.html (modified) (2 diffs)
• Documentation/html/Documentation/Input/setup.html (modified) (1 diff)
• Documentation/html/_modules/ControlFile.html (modified) (11 diffs)
• Documentation/html/_modules/EcFlexpart.html (modified) (27 diffs)
• Documentation/html/_modules/GribUtil.html (modified) (9 diffs)
• Documentation/html/_modules/MarsRetrieval.html (modified) (3 diffs)
• Documentation/html/_modules/UioFiles.html (modified) (10 diffs)
• Documentation/html/_modules/checks.html (modified) (12 diffs)
• Documentation/html/_modules/disaggregation.html (modified) (8 diffs)
• Documentation/html/_modules/get_mars_data.html (modified) (4 diffs)
• Documentation/html/_modules/install.html (modified) (18 diffs)
• Documentation/html/_modules/prepare_flexpart.html (modified) (5 diffs)
• Documentation/html/_modules/submit.html (modified) (1 diff)
• Documentation/html/_modules/tools.html (modified) (9 diffs)
• Documentation/html/_sources/index.rst.txt (modified) (4 diffs)
• Documentation/html/genindex.html (modified) (1 diff)
• Documentation/html/index.html (modified) (4 diffs)
• Documentation/html/objects.inv (modified) (previous)
• Documentation/html/searchindex.js (modified) (1 diff)
• For_developers/Sphinx/source/index.rst (modified) (4 diffs)

Documentation/html/Documentation/Api/api_python.html

@@ -189 +189 @@
 <div class="contents local topic" id="contents">
 <ul class="simple">
-<li><a class="reference internal" href="#programs" id="id1">Programs</a><ul>
-<li><a class="reference internal" href="#module-install" id="id2">install</a></li>
-<li><a class="reference internal" href="#module-submit" id="id3">submit</a></li>
+<li><a class="reference internal" href="#programs" id="id3">Programs</a><ul>
+<li><a class="reference internal" href="#module-install" id="id4">install</a></li>
+<li><a class="reference internal" href="#module-submit" id="id5">submit</a></li>
 </ul>
 </li>
-<li><a class="reference internal" href="#classes" id="id4">Classes</a><ul>
-<li><a class="reference internal" href="#module-ControlFile" id="id5">ControlFile</a></li>
-<li><a class="reference internal" href="#module-EcFlexpart" id="id6">EcFlexpart</a></li>
-<li><a class="reference internal" href="#module-GribUtil" id="id7">GribUtil</a></li>
-<li><a class="reference internal" href="#module-MarsRetrieval" id="id8">MarsRetrieval</a></li>
-<li><a class="reference internal" href="#module-UioFiles" id="id9">UioFiles</a></li>
+<li><a class="reference internal" href="#classes" id="id6">Classes</a><ul>
+<li><a class="reference internal" href="#module-ControlFile" id="id7">ControlFile</a></li>
+<li><a class="reference internal" href="#module-EcFlexpart" id="id8">EcFlexpart</a></li>
+<li><a class="reference internal" href="#module-GribUtil" id="id9">GribUtil</a></li>
+<li><a class="reference internal" href="#module-MarsRetrieval" id="id10">MarsRetrieval</a></li>
+<li><a class="reference internal" href="#module-UioFiles" id="id11">UioFiles</a></li>
 </ul>
 </li>
-<li><a class="reference internal" href="#modules" id="id10">Modules</a><ul>
-<li><a class="reference internal" href="#module-get_mars_data" id="id11">get_mars_data</a></li>
-<li><a class="reference internal" href="#module-prepare_flexpart" id="id12">prepare_flexpart</a></li>
-<li><a class="reference internal" href="#module-tools" id="id13">tools</a></li>
-<li><a class="reference internal" href="#module-checks" id="id14">checks</a></li>
-<li><a class="reference internal" href="#module-disaggregation" id="id15">disaggregation</a></li>
+<li><a class="reference internal" href="#modules" id="id12">Modules</a><ul>
+<li><a class="reference internal" href="#module-get_mars_data" id="id13">get_mars_data</a></li>
+<li><a class="reference internal" href="#module-prepare_flexpart" id="id14">prepare_flexpart</a></li>
+<li><a class="reference internal" href="#module-tools" id="id15">tools</a></li>
+<li><a class="reference internal" href="#module-checks" id="id16">checks</a></li>
+<li><a class="reference internal" href="#module-disaggregation" id="id17">disaggregation</a></li>
 </ul>
 </li>
@@ -213 +213 @@
 </div>
 <div class="section" id="programs">
-<h2><a class="toc-backref" href="#id1">Programs</a><a class="headerlink" href="#programs" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id3">Programs</a><a class="headerlink" href="#programs" title="Permalink to this headline">¶</a></h2>
 <div class="section" id="module-install">
-<span id="install"></span><h3><a class="toc-backref" href="#id2">install</a><a class="headerlink" href="#module-install" title="Permalink to this headline">¶</a></h3>
+<span id="install"></span><h3><a class="toc-backref" href="#id4">install</a><a class="headerlink" href="#module-install" title="Permalink to this headline">¶</a></h3>
 <p>This script installs the flex_extract program.</p>
 <p>Depending on the selected installation environment (locally or on the
@@ -319 +319 @@
 <dl class="function">
 <dt id="install.mk_compilejob">
-<code class="descclassname">install.</code><code class="descname">mk_compilejob</code><span class="sig-paren">(</span><em>makefile</em>, <em>target</em>, <em>ecuid</em>, <em>ecgid</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_compilejob"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_compilejob" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">install.</code><code class="descname">mk_compilejob</code><span class="sig-paren">(</span><em>makefile</em>, <em>ecuid</em>, <em>ecgid</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_compilejob"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_compilejob" title="Permalink to this definition">¶</a></dt>
 <dd><p>Modifies the original job template file so that it is specified
 for the user and the environment were it will be applied. Result
@@ -330 +330 @@
 <li><strong>makefile</strong> (<em>str</em>) – Name of the makefile which should be used to compile FORTRAN
 CONVERT2 program.</li>
-<li><strong>target</strong> (<em>str</em>) – The target where the installation should be done, e.g. the queue.</li>
 <li><strong>ecuid</strong> (<em>str</em>) – The user id on ECMWF server.</li>
 <li><strong>ecgid</strong> (<em>str</em>) – The group id on ECMWF server.</li>
@@ -385 +384 @@
 <dl class="function">
 <dt id="install.mk_job_template">
-<code class="descclassname">install.</code><code class="descname">mk_job_template</code><span class="sig-paren">(</span><em>ecuid</em>, <em>ecgid</em>, <em>gateway</em>, <em>destination</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_job_template"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_job_template" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">install.</code><code class="descname">mk_job_template</code><span class="sig-paren">(</span><em>ecuid</em>, <em>ecgid</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_job_template"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_job_template" title="Permalink to this definition">¶</a></dt>
 <dd><p>Modifies the original job template file so that it is specified
 for the user and the environment were it will be applied. Result
@@ -396 +395 @@
 <li><strong>ecuid</strong> (<em>str</em>) – The user id on ECMWF server.</li>
 <li><strong>ecgid</strong> (<em>str</em>) – The group id on ECMWF server.</li>
-<li><strong>gateway</strong> (<em>str</em>) – The gateway server the user is using.</li>
-<li><strong>destination</strong> (<em>str</em>) – The remote destination which is used to transfer files
-from ECMWF server to local gateway server.</li>
 <li><strong>fp_root</strong> (<em>str</em>) – Path to the root directory of FLEXPART environment or flex_extract
 environment.</li>
@@ -449 +445 @@
 </div>
 <div class="section" id="module-submit">
-<span id="submit"></span><h3><a class="toc-backref" href="#id3">submit</a><a class="headerlink" href="#module-submit" title="Permalink to this headline">¶</a></h3>
+<span id="submit"></span><h3><a class="toc-backref" href="#id5">submit</a><a class="headerlink" href="#module-submit" title="Permalink to this headline">¶</a></h3>
 <p>This script allows the user to extract meteorological fields from the ECMWF.</p>
 <p>It prepares the settings for retrieving the data from ECMWF servers and
@@ -530 +526 @@
 </div>
 <div class="section" id="classes">
-<h2><a class="toc-backref" href="#id4">Classes</a><a class="headerlink" href="#classes" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id6">Classes</a><a class="headerlink" href="#classes" title="Permalink to this headline">¶</a></h2>
 <div class="section" id="module-ControlFile">
-<span id="controlfile"></span><h3><a class="toc-backref" href="#id5">ControlFile</a><a class="headerlink" href="#module-ControlFile" title="Permalink to this headline">¶</a></h3>
+<span id="controlfile"></span><h3><a class="toc-backref" href="#id7">ControlFile</a><a class="headerlink" href="#module-ControlFile" title="Permalink to this headline">¶</a></h3>
 <dl class="class">
 <dt id="ControlFile.ControlFile">
@@ -541 +537 @@
 from the MARS archive for driving FLEXPART are set in a CONTROL file.
 Some specific parameters like the start and end dates can be overwritten
-by the command line parameters, but in generel all parameters needed
+by the command line parameters, but in generall all parameters needed
 for a complete set of fields for FLEXPART can be set in the CONTROL file.</p>
 <dl class="attribute">
@@ -1207 +1203 @@
 
 <dl class="attribute">
-<dt id="ControlFile.ControlFile.grib2flexpart">
-<code class="descname">grib2flexpart</code><a class="headerlink" href="#ControlFile.ControlFile.grib2flexpart" title="Permalink to this definition">¶</a></dt>
-<dd><p>Switch to select generation of preprocessed FLEXPART files “.fp”.
-If it is selected, the program grib2flexpart will try
-to convert the flex_extract output files into “.fp” format.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Type:</th><td class="field-body">int 0</td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
-<dl class="attribute">
 <dt id="ControlFile.ControlFile.ecstorage">
 <code class="descname">ecstorage</code><a class="headerlink" href="#ControlFile.ControlFile.ecstorage" title="Permalink to this definition">¶</a></dt>
@@ -1557 +1537 @@
 <dd><p>List of the names of logical switches which controls the flow
 of the program. Default list is [‘gauss’, ‘omega’, ‘omegadiff’, ‘eta’,
-‘etadiff’, ‘dpdeta’, ‘cwc’, ‘wrf’, ‘grib2flexpart’, ‘ecstorage’,
+‘etadiff’, ‘dpdeta’, ‘cwc’, ‘wrf’, ‘ecstorage’,
 ‘ectrans’, ‘debug’, ‘request’, ‘public’, ‘purefc’, ‘rrint’, ‘doubleelda’]</p>
 <table class="docutils field-list" frame="void" rules="none">
@@ -1642 +1622 @@
 </div>
 <div class="section" id="module-EcFlexpart">
-<span id="ecflexpart"></span><h3><a class="toc-backref" href="#id6">EcFlexpart</a><a class="headerlink" href="#module-EcFlexpart" title="Permalink to this headline">¶</a></h3>
+<span id="ecflexpart"></span><h3><a class="toc-backref" href="#id8">EcFlexpart</a><a class="headerlink" href="#module-EcFlexpart" title="Permalink to this headline">¶</a></h3>
 <dl class="class">
 <dt id="EcFlexpart.EcFlexpart">
@@ -2211 +2191 @@
 </div>
 <div class="section" id="module-GribUtil">
-<span id="gributil"></span><h3><a class="toc-backref" href="#id7">GribUtil</a><a class="headerlink" href="#module-GribUtil" title="Permalink to this headline">¶</a></h3>
+<span id="gributil"></span><h3><a class="toc-backref" href="#id9">GribUtil</a><a class="headerlink" href="#module-GribUtil" title="Permalink to this headline">¶</a></h3>
 <dl class="class">
 <dt id="GribUtil.GribUtil">
@@ -2226 +2206 @@
 <dl class="method">
 <dt id="GribUtil.GribUtil.copy_dummy_msg">
-<code class="descname">copy_dummy_msg</code><span class="sig-paren">(</span><em>filename_in</em>, <em>selectWhere=True</em>, <em>keynames=[]</em>, <em>keyvalues=[]</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.copy_dummy_msg"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.copy_dummy_msg" title="Permalink to this definition">¶</a></dt>
+<code class="descname">copy_dummy_msg</code><span class="sig-paren">(</span><em>filename_in</em>, <em>keynames</em>, <em>keyvalues</em>, <em>selectwhere=True</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.copy_dummy_msg"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.copy_dummy_msg" title="Permalink to this definition">¶</a></dt>
 <dd><p>Add the content of another input grib file to the objects file but
 only messages corresponding to keys/values passed to the function.
@@ -2237 +2217 @@
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
 <li><strong>filename_in</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – Filename of the input file to read the grib messages from.</li>
-<li><strong>selectWhere</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">boolean</span></code>, optional) – Decides if to copy the keynames and values equal to (True) or
+<li><strong>selectwhere</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">boolean</span></code>, optional) – Decides if to copy the keynames and values equal to (True) or
 different to (False) the keynames/keyvalues list passed to the
 function. Default is True.</li>
-<li><strong>keynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keynames. Default is an empty list.</li>
-<li><strong>keyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keyvalues. Default is an empty list.</li>
+<li><strong>keynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keynames.</li>
+<li><strong>keyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keyvalues.</li>
 <li><strong>filemode</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Sets the mode for the output file. Default is “wb”.</li>
 </ul>
@@ -2252 +2232 @@
 <dl class="method">
 <dt id="GribUtil.GribUtil.get_keys">
-<code class="descname">get_keys</code><span class="sig-paren">(</span><em>keynames</em>, <em>wherekeynames=[]</em>, <em>wherekeyvalues=[]</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.get_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.get_keys" title="Permalink to this definition">¶</a></dt>
+<code class="descname">get_keys</code><span class="sig-paren">(</span><em>keynames</em>, <em>wherekeynames</em>, <em>wherekeyvalues</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.get_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.get_keys" title="Permalink to this definition">¶</a></dt>
 <dd><p>Get keyvalues for a given list of keynames a where statement
 can be given (list of key and list of values)</p>
@@ -2261 +2241 @@
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
 <li><strong>keynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keynames.</li>
-<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Default value is an empty list.</li>
-<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Default value is an empty list.</li>
+<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of key names for indexing grib message parameter.</li>
+<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of key values corresponding the key names.</li>
 </ul>
 </td>
@@ -2278 +2258 @@
 <dl class="method">
 <dt id="GribUtil.GribUtil.index">
-<code class="descname">index</code><span class="sig-paren">(</span><em>index_keys=['mars'], index_file='my.idx'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.index"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.index" title="Permalink to this definition">¶</a></dt>
+<code class="descname">index</code><span class="sig-paren">(</span><em>index_keys</em>, <em>index_file='my.idx'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.index"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.index" title="Permalink to this definition">¶</a></dt>
 <dd><p>Create index file from a list of files if it does not exist or
 read an index file.</p>
@@ -2286 +2266 @@
 <tbody valign="top">
 <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>index_keys</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Contains the list of key parameter names from
-which the index is to be created.
-Default is a list with a single entry string “mars”.</li>
+<li><strong>index_keys</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – Contains the list of key parameter names from
+which the index is to be created.</li>
 <li><strong>index_file</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Filename where the indices are stored.
 Default is “my.idx”.</li>
@@ -2306 +2285 @@
 <dl class="method">
 <dt id="GribUtil.GribUtil.set_keys">
-<code class="descname">set_keys</code><span class="sig-paren">(</span><em>fromfile</em>, <em>keynames</em>, <em>keyvalues</em>, <em>wherekeynames=[]</em>, <em>wherekeyvalues=[]</em>, <em>strict=False</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
+<code class="descname">set_keys</code><span class="sig-paren">(</span><em>fromfile</em>, <em>keynames</em>, <em>keyvalues</em>, <em>wherekeynames</em>, <em>wherekeyvalues</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
 <dd><p>Opens the file to read the grib messages and then write
 the selected messages (with wherekeys) to a new output file.
@@ -2320 +2299 @@
 <li><strong>keyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keyvalues to set in the selected messages.
 Default is an empty list.</li>
-<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keynames to select correct message.
-Default value is an empty list.</li>
-<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keyvalues for keynames to select correct message.
-Default value is an empty list.</li>
-<li><strong>strict</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">boolean</span></code>, optional) – Decides if everything from keynames and keyvalues
-is written out the grib file (False) or only those
-meeting the where statement (True). Default is False.</li>
+<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keynames to select correct message.</li>
+<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keyvalues for keynames to select correct message.</li>
 <li><strong>filemode</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Sets the mode for the output file. Default is “wb”.</li>
 </ul>
@@ -2339 +2313 @@
 </div>
 <div class="section" id="module-MarsRetrieval">
-<span id="marsretrieval"></span><h3><a class="toc-backref" href="#id8">MarsRetrieval</a><a class="headerlink" href="#module-MarsRetrieval" title="Permalink to this headline">¶</a></h3>
+<span id="marsretrieval"></span><h3><a class="toc-backref" href="#id10">MarsRetrieval</a><a class="headerlink" href="#module-MarsRetrieval" title="Permalink to this headline">¶</a></h3>
 <dl class="class">
 <dt id="MarsRetrieval.MarsRetrieval">
@@ -2692 +2666 @@
 </div>
 <div class="section" id="module-UioFiles">
-<span id="uiofiles"></span><h3><a class="toc-backref" href="#id9">UioFiles</a><a class="headerlink" href="#module-UioFiles" title="Permalink to this headline">¶</a></h3>
+<span id="uiofiles"></span><h3><a class="toc-backref" href="#id11">UioFiles</a><a class="headerlink" href="#module-UioFiles" title="Permalink to this headline">¶</a></h3>
 <dl class="class">
 <dt id="UioFiles.UioFiles">
@@ -2717 +2691 @@
 <dt id="UioFiles.UioFiles.pattern">
 <code class="descname">pattern</code><a class="headerlink" href="#UioFiles.UioFiles.pattern" title="Permalink to this definition">¶</a></dt>
-<dd><p>Regular expression pattern. For example: ‘*.grb’</p>
+<dd><p>Regular expression pattern. For example: ‘<a href="#id1"><span class="problematic" id="id2">*</span></a>.grb’</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -2753 +2727 @@
 </div>
 <div class="section" id="modules">
-<h2><a class="toc-backref" href="#id10">Modules</a><a class="headerlink" href="#modules" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id12">Modules</a><a class="headerlink" href="#modules" title="Permalink to this headline">¶</a></h2>
 <div class="section" id="module-get_mars_data">
-<span id="get-mars-data"></span><h3><a class="toc-backref" href="#id11">get_mars_data</a><a class="headerlink" href="#module-get_mars_data" title="Permalink to this headline">¶</a></h3>
+<span id="get-mars-data"></span><h3><a class="toc-backref" href="#id13">get_mars_data</a><a class="headerlink" href="#module-get_mars_data" title="Permalink to this headline">¶</a></h3>
 <p>This script extracts MARS data from ECMWF servers.</p>
 <p>At first, the necessary parameters from command line and CONTROL files are
@@ -2778 +2752 @@
 <dt id="get_mars_data.check_dates_for_nonflux_fc_times">
 <code class="descclassname">get_mars_data.</code><code class="descname">check_dates_for_nonflux_fc_times</code><span class="sig-paren">(</span><em>types</em>, <em>times</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/get_mars_data.html#check_dates_for_nonflux_fc_times"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#get_mars_data.check_dates_for_nonflux_fc_times" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Checks if the time 18UTC corresponds to forecast field.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>types</strong> (<em>list of str</em>) – List of field types.</li>
+<li><strong>times</strong> (<em>list of str</em><em> or </em><em>str</em>) – The time in hours of the field.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first"></p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">True or False</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
 
 <dl class="function">
@@ -2846 +2839 @@
 boundary conditions)</p>
 <p>Since for basetime the extraction contains the 12 hours upfront,
-if basetime is 0, the starting date has to be the day before and</p>
+if basetime is 0, the starting date has to be the day before</p>
 <table class="docutils field-list" frame="void" rules="none">
 <col class="field-name" />
@@ -2929 +2922 @@
 </div>
 <div class="section" id="module-prepare_flexpart">
-<span id="prepare-flexpart"></span><h3><a class="toc-backref" href="#id12">prepare_flexpart</a><a class="headerlink" href="#module-prepare_flexpart" title="Permalink to this headline">¶</a></h3>
+<span id="prepare-flexpart"></span><h3><a class="toc-backref" href="#id14">prepare_flexpart</a><a class="headerlink" href="#module-prepare_flexpart" title="Permalink to this headline">¶</a></h3>
 <p>This script prepares the final version of the grib files which are
 then used by FLEXPART.</p>
@@ -2982 +2975 @@
 </div>
 <div class="section" id="module-tools">
-<span id="tools"></span><h3><a class="toc-backref" href="#id13">tools</a><a class="headerlink" href="#module-tools" title="Permalink to this headline">¶</a></h3>
+<span id="tools"></span><h3><a class="toc-backref" href="#id15">tools</a><a class="headerlink" href="#module-tools" title="Permalink to this headline">¶</a></h3>
 <p>This module contains a collection of diverse tasks within flex_extract.</p>
 <dl class="function">
@@ -3491 +3484 @@
 </div>
 <div class="section" id="module-checks">
-<span id="checks"></span><h3><a class="toc-backref" href="#id14">checks</a><a class="headerlink" href="#module-checks" title="Permalink to this headline">¶</a></h3>
+<span id="checks"></span><h3><a class="toc-backref" href="#id16">checks</a><a class="headerlink" href="#module-checks" title="Permalink to this headline">¶</a></h3>
 <p>This module contains check methods for the CONTROL paramaters.</p>
 <dl class="function">
@@ -3846 +3839 @@
 <dl class="function">
 <dt id="checks.check_number">
-<code class="descclassname">checks.</code><code class="descname">check_number</code><span class="sig-paren">(</span><em>number</em>, <em>mailfail</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_number"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_number" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">checks.</code><code class="descname">check_number</code><span class="sig-paren">(</span><em>number</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_number"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_number" title="Permalink to this definition">¶</a></dt>
 <dd><p>Check for correct string format of ensemble member numbers.</p>
 <table class="docutils field-list" frame="void" rules="none">
@@ -3852 +3845 @@
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>number</strong> (<em>str</em>) – List of ensemble member forecast runs.</li>
-<li><strong>mailfail</strong> (<em>list of str</em>) – Contains all email addresses which should be notified.
-It might also contain just the ecmwf user name which will trigger
-mailing to the associated email address for this user.</li>
-</ul>
-</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first"><strong>number</strong> – String with list of ensemble member forecast runs. E.g. ‘01/02/03/04’</p>
-</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">str</p>
-</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>number</strong> (<em>str</em>) – List of ensemble member forecast runs.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><strong>number</strong> – String with list of ensemble member forecast runs. E.g. ‘01/02/03/04’</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">str</td>
 </tr>
 </tbody>
@@ -4005 +3990 @@
 <dl class="function">
 <dt id="checks.check_step">
-<code class="descclassname">checks.</code><code class="descname">check_step</code><span class="sig-paren">(</span><em>step</em>, <em>mailfail</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_step"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_step" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">checks.</code><code class="descname">check_step</code><span class="sig-paren">(</span><em>step</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_step"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_step" title="Permalink to this definition">¶</a></dt>
 <dd><p>Checks on step format and convert into a list of steps.</p>
 <p>If the steps were defined with “to” and “by” they are converted into
@@ -4014 +3999 @@
 <col class="field-body" />
 <tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>step</strong> (<em>list of str</em><em> or </em><em>str</em>) – Specifies the forecast time step from forecast base time.
-Valid values are hours (HH) from forecast base time.</li>
-<li><strong>mailfail</strong> (<em>list of str</em>) – Contains all email addresses which should be notified.
-It might also contain just the ecmwf user name which will trigger
-mailing to the associated email address for this user.</li>
-</ul>
-</td>
-</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first"><strong>step</strong> – List of forecast steps in format e.g. [001, 002, …]</p>
-</td>
-</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">list of str</p>
-</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>step</strong> (<em>list of str</em><em> or </em><em>str</em>) – Specifies the forecast time step from forecast base time.
+Valid values are hours (HH) from forecast base time.</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><strong>step</strong> – List of forecast steps in format e.g. [001, 002, …]</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">list of str</td>
 </tr>
 </tbody>
@@ -4079 +4056 @@
 </div>
 <div class="section" id="module-disaggregation">
-<span id="disaggregation"></span><h3><a class="toc-backref" href="#id15">disaggregation</a><a class="headerlink" href="#module-disaggregation" title="Permalink to this headline">¶</a></h3>
+<span id="disaggregation"></span><h3><a class="toc-backref" href="#id17">disaggregation</a><a class="headerlink" href="#module-disaggregation" title="Permalink to this headline">¶</a></h3>
 <p>Disaggregation of deaccumulated flux data from an ECMWF model FG field.</p>
 <dl class="docutils">

Documentation/html/Documentation/Input/run.html

@@ -508 +508 @@
 
 <span class="nv">QUEUE</span><span class="o">=</span><span class="s1">&#39;ecgate&#39;</span>
-<span class="nv">START_DATE</span><span class="o">=</span>None
-<span class="nv">END_DATE</span><span class="o">=</span>None
+<span class="nv">START_DATE</span><span class="o">=</span><span class="m">20190101</span>
+<span class="nv">END_DATE</span><span class="o">=</span><span class="m">20190101</span>
 <span class="nv">DATE_CHUNK</span><span class="o">=</span>None
 <span class="nv">JOB_CHUNK</span><span class="o">=</span><span class="m">3</span>
@@ -521 +521 @@
 <span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">&#39;job.temp&#39;</span> 
 <span class="nv">CONTROLFILE</span><span class="o">=</span><span class="s1">&#39;CONTROL_EA5&#39;</span> 
-<span class="nv">DEBUG</span><span class="o">=</span><span class="m">0</span>
-<span class="nv">REQUEST</span><span class="o">=</span><span class="m">0</span>
+<span class="nv">DEBUG</span><span class="o">=</span><span class="m">1</span>
+<span class="nv">REQUEST</span><span class="o">=</span><span class="m">2</span>
 <span class="nv">PUBLIC</span><span class="o">=</span><span class="m">0</span>
 

Documentation/html/Documentation/Input/setup.html

@@ -367 +367 @@
 <span class="c1">#</span>
 <span class="nv">TARGET</span><span class="o">=</span><span class="s1">&#39;ecgate&#39;</span>
-<span class="nv">MAKEFILE</span><span class="o">=</span><span class="s1">&#39;makefile.eccodes&#39;</span>
+<span class="nv">MAKEFILE</span><span class="o">=</span><span class="s1">&#39;makefile_ecgate&#39;</span>
 <span class="nv">ECUID</span><span class="o">=</span><span class="s1">&#39;km4a&#39;</span>
 <span class="nv">ECGID</span><span class="o">=</span><span class="s1">&#39;at&#39;</span>

Documentation/html/_modules/ControlFile.html

@@ -200 +200 @@
 
 <span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">inspect</span>
 
 <span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
 <span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">&#39;../&#39;</span><span class="p">)</span>
 <span class="kn">import</span> <span class="nn">_config</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">silent_remove</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">my_error</span>
 <span class="kn">from</span> <span class="nn">Mods.checks</span> <span class="k">import</span> <span class="p">(</span><span class="n">check_grid</span><span class="p">,</span> <span class="n">check_area</span><span class="p">,</span> <span class="n">check_levels</span><span class="p">,</span> <span class="n">check_purefc</span><span class="p">,</span>
                          <span class="n">check_step</span><span class="p">,</span> <span class="n">check_mail</span><span class="p">,</span> <span class="n">check_queue</span><span class="p">,</span> <span class="n">check_pathes</span><span class="p">,</span>
@@ -215 +214 @@
                          <span class="n">check_logicals_type</span><span class="p">,</span> <span class="n">check_len_type_time_step</span><span class="p">,</span>
                          <span class="n">check_addpar</span><span class="p">,</span> <span class="n">check_job_chunk</span><span class="p">,</span> <span class="n">check_number</span><span class="p">)</span>
+<span class="c1">#pylint: enable=wrong-import-position</span>
 
 <span class="c1"># ------------------------------------------------------------------------------</span>
@@ -227 +227 @@
 <span class="sd">    from the MARS archive for driving FLEXPART are set in a CONTROL file.</span>
 <span class="sd">    Some specific parameters like the start and end dates can be overwritten</span>
-<span class="sd">    by the command line parameters, but in generel all parameters needed</span>
+<span class="sd">    by the command line parameters, but in generall all parameters needed</span>
 <span class="sd">    for a complete set of fields for FLEXPART can be set in the CONTROL file.</span>
 
@@ -400 +400 @@
 <span class="sd">        Default value is [&#39;${USER}&#39;].</span>
 
-<span class="sd">    grib2flexpart : int 0</span>
-<span class="sd">        Switch to select generation of preprocessed FLEXPART files &quot;.fp&quot;.</span>
-<span class="sd">        If it is selected, the program grib2flexpart will try</span>
-<span class="sd">        to convert the flex_extract output files into &quot;.fp&quot; format.</span>
-
 <span class="sd">    ecstorage : int</span>
 <span class="sd">        Switch to select storage of FLEXPART ready output files</span>
@@ -496 +491 @@
 <span class="sd">        List of the names of logical switches which controls the flow</span>
 <span class="sd">        of the program. Default list is [&#39;gauss&#39;, &#39;omega&#39;, &#39;omegadiff&#39;, &#39;eta&#39;,</span>
-<span class="sd">        &#39;etadiff&#39;, &#39;dpdeta&#39;, &#39;cwc&#39;, &#39;wrf&#39;, &#39;grib2flexpart&#39;, &#39;ecstorage&#39;,</span>
+<span class="sd">        &#39;etadiff&#39;, &#39;dpdeta&#39;, &#39;cwc&#39;, &#39;wrf&#39;, &#39;ecstorage&#39;,</span>
 <span class="sd">        &#39;ectrans&#39;, &#39;debug&#39;, &#39;request&#39;, &#39;public&#39;, &#39;purefc&#39;, &#39;rrint&#39;, &#39;doubleelda&#39;]</span>
 <span class="sd">    &#39;&#39;&#39;</span>
@@ -562 +557 @@
         <span class="bp">self</span><span class="o">.</span><span class="n">mailfail</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;$</span><span class="si">{USER}</span><span class="s1">&#39;</span><span class="p">]</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">mailops</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;$</span><span class="si">{USER}</span><span class="s1">&#39;</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">grib2flexpart</span> <span class="o">=</span> <span class="mi">0</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">ecstorage</span> <span class="o">=</span> <span class="mi">0</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">ectrans</span> <span class="o">=</span> <span class="mi">0</span>
@@ -587 +581 @@
 
         <span class="bp">self</span><span class="o">.</span><span class="n">logicals</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;gauss&#39;</span><span class="p">,</span> <span class="s1">&#39;omega&#39;</span><span class="p">,</span> <span class="s1">&#39;omegadiff&#39;</span><span class="p">,</span> <span class="s1">&#39;eta&#39;</span><span class="p">,</span> <span class="s1">&#39;etadiff&#39;</span><span class="p">,</span>
-                         <span class="s1">&#39;dpdeta&#39;</span><span class="p">,</span> <span class="s1">&#39;cwc&#39;</span><span class="p">,</span> <span class="s1">&#39;wrf&#39;</span><span class="p">,</span> <span class="s1">&#39;grib2flexpart&#39;</span><span class="p">,</span> <span class="s1">&#39;ecstorage&#39;</span><span class="p">,</span>
+                         <span class="s1">&#39;dpdeta&#39;</span><span class="p">,</span> <span class="s1">&#39;cwc&#39;</span><span class="p">,</span> <span class="s1">&#39;wrf&#39;</span><span class="p">,</span> <span class="s1">&#39;ecstorage&#39;</span><span class="p">,</span>
                          <span class="s1">&#39;ectrans&#39;</span><span class="p">,</span> <span class="s1">&#39;debug&#39;</span><span class="p">,</span> <span class="s1">&#39;oper&#39;</span><span class="p">,</span> <span class="s1">&#39;request&#39;</span><span class="p">,</span> <span class="s1">&#39;public&#39;</span><span class="p">,</span>
                          <span class="s1">&#39;purefc&#39;</span><span class="p">,</span> <span class="s1">&#39;rrint&#39;</span><span class="p">,</span> <span class="s1">&#39;doubleelda&#39;</span><span class="p">]</span>
@@ -764 +758 @@
 
         <span class="bp">self</span><span class="o">.</span><span class="n">outputdir</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="n">check_pathes</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span>
-             <span class="bp">self</span><span class="o">.</span><span class="n">outputdir</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">flexextractdir</span><span class="p">)</span>
+                                                       <span class="bp">self</span><span class="o">.</span><span class="n">outputdir</span><span class="p">,</span>
+                                                       <span class="bp">self</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
+                                                       <span class="bp">self</span><span class="o">.</span><span class="n">flexextractdir</span><span class="p">)</span>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">start_date</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="n">check_dates</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">start_date</span><span class="p">,</span>
@@ -773 +769 @@
         <span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">check_levels</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">)</span>
 
-        <span class="bp">self</span><span class="o">.</span><span class="n">step</span> <span class="o">=</span> <span class="n">check_step</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">mailfail</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step</span> <span class="o">=</span> <span class="n">check_step</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">)</span>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">maxstep</span> <span class="o">=</span> <span class="n">check_maxstep</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">maxstep</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">)</span>
@@ -811 +807 @@
         <span class="bp">self</span><span class="o">.</span><span class="n">job_chunk</span> <span class="o">=</span> <span class="n">check_job_chunk</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">job_chunk</span><span class="p">)</span>
 
-        <span class="bp">self</span><span class="o">.</span><span class="n">number</span> <span class="o">=</span> <span class="n">check_number</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">number</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">mailfail</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">number</span> <span class="o">=</span> <span class="n">check_number</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">number</span><span class="p">)</span>
 
         <span class="k">return</span></div>
@@ -857 +853 @@
 
         <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">l</span><span class="p">)</span></div></div>
-
 </pre></div>
 

Documentation/html/_modules/EcFlexpart.html

@@ -215 +215 @@
 <span class="c1">#pylint: disable=consider-using-enumerate</span>
 <span class="c1"># this is not useful in this case</span>
+<span class="c1">#pylint: disable=unsubscriptable-object</span>
+<span class="c1"># this error is a bug</span>
+<span class="c1">#pylint: disable=ungrouped-imports</span>
+<span class="c1"># not necessary that we group the imports</span>
 <span class="c1"># ------------------------------------------------------------------------------</span>
 <span class="c1"># MODULES</span>
@@ -224 +228 @@
 <span class="kn">import</span> <span class="nn">glob</span>
 <span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">subprocess</span>
 <span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
 
 <span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
 <span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">&#39;../&#39;</span><span class="p">)</span>
 <span class="kn">import</span> <span class="nn">_config</span>
 <span class="kn">from</span> <span class="nn">Classes.GribUtil</span> <span class="k">import</span> <span class="n">GribUtil</span>
 <span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">init128</span><span class="p">,</span> <span class="n">to_param_id</span><span class="p">,</span> <span class="n">silent_remove</span><span class="p">,</span> <span class="n">product</span><span class="p">,</span>
-                        <span class="n">my_error</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">,</span> <span class="n">get_informations</span><span class="p">,</span> <span class="n">get_dimensions</span><span class="p">,</span>
+                        <span class="n">my_error</span><span class="p">,</span> <span class="n">get_informations</span><span class="p">,</span> <span class="n">get_dimensions</span><span class="p">,</span>
                         <span class="n">execute_subprocess</span><span class="p">,</span> <span class="n">to_param_id_with_tablenumber</span><span class="p">,</span>
                         <span class="n">generate_retrieval_period_boundary</span><span class="p">)</span>
@@ -238 +242 @@
 <span class="kn">from</span> <span class="nn">Classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
 <span class="kn">import</span> <span class="nn">Mods.disaggregation</span> <span class="k">as</span> <span class="nn">disaggregation</span>
-
+<span class="c1">#pylint: enable=wrong-import-position</span>
 <span class="c1"># ------------------------------------------------------------------------------</span>
 <span class="c1"># CLASS</span>
@@ -479 +483 @@
 
 <span class="sd">        &#39;&#39;&#39;</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">purefc</span><span class="p">:</span>
+            <span class="c1"># need to retrieve forecasts for step 000 in case of pure forecast</span>
+            <span class="n">steps</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{}</span><span class="s1">/to/</span><span class="si">{}</span><span class="s1">/by/</span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">accmaxstep</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">steps</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{}</span><span class="s1">/to/</span><span class="si">{}</span><span class="s1">/by/</span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">,</span>
+                                            <span class="bp">self</span><span class="o">.</span><span class="n">accmaxstep</span><span class="p">,</span>
+                                            <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">)</span>
+
         <span class="bp">self</span><span class="o">.</span><span class="n">types</span><span class="p">[</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">acctype</span><span class="p">)]</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;times&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">acctime</span><span class="p">),</span>
-                                         <span class="s1">&#39;steps&#39;</span><span class="p">:</span> <span class="s1">&#39;</span><span class="si">{}</span><span class="s1">/to/</span><span class="si">{}</span><span class="s1">/by/</span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
-                                             <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">,</span>
-                                             <span class="bp">self</span><span class="o">.</span><span class="n">accmaxstep</span><span class="p">,</span>
-                                             <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">)}</span>
+                                         <span class="s1">&#39;steps&#39;</span><span class="p">:</span> <span class="n">steps</span><span class="p">}</span>
         <span class="k">return</span>
 
@@ -563 +572 @@
         <span class="k">else</span><span class="p">:</span>  <span class="c1"># GAUSS and ETA</span>
             <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Warning: Collecting etadot and parameters for gaussian grid &#39;</span>
-                           <span class="s1">&#39;is a very costly parameter combination, &#39;</span>
-                           <span class="s1">&#39;use this combination only for debugging!&#39;</span><span class="p">)</span>
+                  <span class="s1">&#39;is a very costly parameter combination, &#39;</span>
+                  <span class="s1">&#39;use this combination only for debugging!&#39;</span><span class="p">)</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">[</span><span class="s1">&#39;GG__SL&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;Q&#39;</span><span class="p">,</span> <span class="s1">&#39;ML&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">,</span>
                                      <span class="s1">&#39;</span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">((</span><span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">resol</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)]</span>
@@ -577 +586 @@
 
         <span class="c1"># ADDITIONAL FIELDS FOR FLEXPART-WRF MODEL (IF QUESTIONED)</span>
-        <span class="c1"># -----------------------------------------------------------------------</span>
+        <span class="c1"># ----------------------------------------------------------------------</span>
         <span class="k">if</span> <span class="n">wrf</span><span class="p">:</span>
             <span class="c1"># @WRF</span>
@@ -872 +881 @@
                     <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dates</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
                     <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;target&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mk_targetname</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span>
-                                            <span class="n">pk</span><span class="p">,</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">])</span>
+                                                                    <span class="n">pk</span><span class="p">,</span>
+                                                                    <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">])</span>
                 <span class="k">elif</span> <span class="n">pk</span> <span class="o">==</span> <span class="s1">&#39;OG_OROLSM__SL&#39;</span> <span class="ow">and</span> <span class="n">oro</span><span class="p">:</span>
                     <span class="k">continue</span>
@@ -914 +924 @@
                         <span class="k">if</span> <span class="s1">&#39;acc&#39;</span> <span class="ow">in</span> <span class="n">pk</span><span class="p">:</span>
                             <span class="n">startdate</span> <span class="o">=</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                            <span class="n">enddate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">elimit</span> <span class="o">-</span> <span class="n">t24h</span><span class="p">,</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)</span>
+                            <span class="n">enddate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">elimit</span> <span class="o">-</span> <span class="n">t24h</span><span class="p">,</span> <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)</span>
                             <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;/&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">startdate</span><span class="p">,</span>
                                                                 <span class="s1">&#39;to&#39;</span><span class="p">,</span>
@@ -938 +948 @@
 
                     <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">basetime</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> \
-                            <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">elimit</span> <span class="o">-</span> <span class="n">t24h</span><span class="p">,</span> <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)</span>
+<span class="c1">#                        retr_param_dict[&#39;date&#39;] = \</span>
+<span class="c1">#                            datetime.strftime(elimit - t24h, &#39;%Y%m%d&#39;)</span>
 
                         <span class="n">timesave</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;time&#39;</span><span class="p">])</span>
 
-                        <span class="k">if</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span> <span class="ow">in</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;time&#39;</span><span class="p">]</span> <span class="ow">and</span>
-                            <span class="n">pk</span> <span class="o">!=</span> <span class="s1">&#39;OG_OROLSM__SL&#39;</span> <span class="ow">and</span>
-                            <span class="s1">&#39;acc&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">pk</span> <span class="p">)</span> <span class="p">:</span>
+                        <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="s1">&#39;/&#39;</span> <span class="ow">in</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;time&#39;</span><span class="p">],</span>
+                                <span class="n">pk</span> <span class="o">!=</span> <span class="s1">&#39;OG_OROLSM__SL&#39;</span><span class="p">,</span>
+                                <span class="s1">&#39;acc&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">pk</span><span class="p">]):</span>
                             <span class="n">times</span> <span class="o">=</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;time&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>
                             <span class="n">steps</span> <span class="o">=</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;step&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>
@@ -956 +966 @@
                                     <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">times</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
 
-                        <span class="k">if</span> <span class="p">(</span><span class="n">pk</span> <span class="o">!=</span> <span class="s1">&#39;OG_OROLSM__SL&#39;</span> <span class="ow">and</span>
-                            <span class="nb">int</span><span class="p">(</span><span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;step&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span>
-                            <span class="nb">int</span><span class="p">(</span><span class="n">timesave</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+                        <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">pk</span> <span class="o">!=</span> <span class="s1">&#39;OG_OROLSM__SL&#39;</span><span class="p">,</span>
+                                <span class="nb">int</span><span class="p">(</span><span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;step&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span>
+                                <span class="nb">int</span><span class="p">(</span><span class="n">timesave</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">]):</span>
 
                             <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> \
@@ -972 +982 @@
                     <span class="k">else</span><span class="p">:</span>
                         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;ERROR: Basetime has an invalid value &#39;</span>
-                                                 <span class="s1">&#39;-&gt; </span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">basetime</span><span class="p">)))</span>
+                                         <span class="s1">&#39;-&gt; </span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">basetime</span><span class="p">)))</span>
 
         <span class="k">if</span> <span class="n">request</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">request</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
@@ -1022 +1032 @@
 
             <span class="n">stream</span> <span class="o">=</span> <span class="n">namelist_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
-                <span class="n">maxl</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">maxl</span><span class="p">),</span>
-                <span class="n">maxb</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">maxb</span><span class="p">),</span>
-                <span class="n">mlevel</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">),</span>
-                <span class="n">mlevelist</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">),</span>
-                <span class="n">mnauf</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">resol</span><span class="p">),</span>
-                <span class="n">metapar</span> <span class="o">=</span> <span class="s1">&#39;77&#39;</span><span class="p">,</span>
-                <span class="n">rlo0</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">1</span><span class="p">]),</span>
-                <span class="n">rlo1</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">3</span><span class="p">]),</span>
-                <span class="n">rla0</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">2</span><span class="p">]),</span>
-                <span class="n">rla1</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span>
-                <span class="n">momega</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omega</span><span class="p">),</span>
-                <span class="n">momegadiff</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omegadiff</span><span class="p">),</span>
-                <span class="n">mgauss</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">gauss</span><span class="p">),</span>
-                <span class="n">msmooth</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">smooth</span><span class="p">),</span>
-                <span class="n">meta</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">eta</span><span class="p">),</span>
-                <span class="n">metadiff</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">etadiff</span><span class="p">),</span>
-                <span class="n">mdpdeta</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dpdeta</span><span class="p">)</span>
+                <span class="n">maxl</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">maxl</span><span class="p">),</span>
+                <span class="n">maxb</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">maxb</span><span class="p">),</span>
+                <span class="n">mlevel</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">),</span>
+                <span class="n">mlevelist</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">),</span>
+                <span class="n">mnauf</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">resol</span><span class="p">),</span>
+                <span class="n">metapar</span><span class="o">=</span><span class="s1">&#39;77&#39;</span><span class="p">,</span>
+                <span class="n">rlo0</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">1</span><span class="p">]),</span>
+                <span class="n">rlo1</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">3</span><span class="p">]),</span>
+                <span class="n">rla0</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">2</span><span class="p">]),</span>
+                <span class="n">rla1</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span>
+                <span class="n">momega</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omega</span><span class="p">),</span>
+                <span class="n">momegadiff</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omegadiff</span><span class="p">),</span>
+                <span class="n">mgauss</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">gauss</span><span class="p">),</span>
+                <span class="n">msmooth</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">smooth</span><span class="p">),</span>
+                <span class="n">meta</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">eta</span><span class="p">),</span>
+                <span class="n">metadiff</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">etadiff</span><span class="p">),</span>
+                <span class="n">mdpdeta</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dpdeta</span><span class="p">)</span>
             <span class="p">)</span>
         <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
@@ -1090 +1100 @@
 <span class="sd">        &#39;&#39;&#39;</span>
         <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-        <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
+        <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
                              <span class="n">codes_get_values</span><span class="p">,</span> <span class="n">codes_set_values</span><span class="p">,</span> <span class="n">codes_set</span><span class="p">,</span>
                              <span class="n">codes_write</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span>
@@ -1215 +1225 @@
             <span class="n">step</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">&#39;step&#39;</span><span class="p">)</span> <span class="c1"># integer</span>
             <span class="n">ctime</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{:0&gt;2}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">time</span><span class="p">)</span>
-            <span class="n">cstep</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{:0&gt;3}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">step</span><span class="p">)</span>
 
             <span class="n">t_date</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">cdate</span> <span class="o">+</span> <span class="n">ctime</span><span class="p">,</span> <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">%H&#39;</span><span class="p">)</span>
@@ -1294 +1303 @@
                     <span class="n">deac_vals</span><span class="p">[</span><span class="n">parId</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
                         <span class="p">(</span><span class="n">orig_vals</span><span class="p">[</span><span class="n">parId</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">orig_vals</span><span class="p">[</span><span class="n">parId</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span> <span class="o">/</span>
-                         <span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
+                        <span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
 
                 <span class="c1"># store precipitation if new disaggregation method is selected</span>
@@ -1494 +1503 @@
             <span class="k">for</span> <span class="n">inum</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">maxnum</span><span class="p">):</span>
                 <span class="k">for</span> <span class="n">ix</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ni</span><span class="o">*</span><span class="n">nj</span><span class="p">):</span>
-                    <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-                    <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+                    <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+                    <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="k">for</span> <span class="n">ix</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ni</span><span class="o">*</span><span class="n">nj</span><span class="p">):</span>
-                <span class="n">lsp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-                <span class="n">cp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+                <span class="n">lsp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+                <span class="n">cp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
 
         <span class="c1"># write to grib files (full/orig times to flux file and inbetween</span>
@@ -1564 +1573 @@
             <span class="c1"># write original time step to flux file as usual</span>
             <span class="n">fluxfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="n">fluxfilename</span><span class="p">))</span>
-            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span>
                               <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span>
-                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span><span class="s1">&#39;date&#39;</span><span class="p">,</span><span class="s1">&#39;time&#39;</span><span class="p">,</span><span class="s1">&#39;stepRange&#39;</span><span class="p">,</span><span class="s1">&#39;values&#39;</span><span class="p">],</span>
+                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span> <span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;time&#39;</span><span class="p">,</span>
+                                        <span class="s1">&#39;stepRange&#39;</span><span class="p">,</span> <span class="s1">&#39;values&#39;</span><span class="p">],</span>
                               <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
-                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="p">]],</span>
+                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]],</span>
                              <span class="p">)</span>
-            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span>
                               <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span>
-                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span><span class="s1">&#39;date&#39;</span><span class="p">,</span><span class="s1">&#39;time&#39;</span><span class="p">,</span><span class="s1">&#39;stepRange&#39;</span><span class="p">,</span><span class="s1">&#39;values&#39;</span><span class="p">],</span>
-                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
-                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="p">]]</span>
+                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span> <span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;time&#39;</span><span class="p">,</span>
+                                        <span class="s1">&#39;stepRange&#39;</span><span class="p">,</span> <span class="s1">&#39;values&#39;</span><span class="p">],</span>
+                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
+                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]]</span>
                              <span class="p">)</span>
 
             <span class="c1"># rr for first subgrid point is identified by step = 1</span>
-            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span>
                               <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span>
-                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span><span class="s1">&#39;date&#39;</span><span class="p">,</span><span class="s1">&#39;time&#39;</span><span class="p">,</span><span class="s1">&#39;stepRange&#39;</span><span class="p">,</span><span class="s1">&#39;values&#39;</span><span class="p">],</span>
-                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
-                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
-                              <span class="p">)</span>
-            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span> <span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;time&#39;</span><span class="p">,</span>
+                                        <span class="s1">&#39;stepRange&#39;</span><span class="p">,</span> <span class="s1">&#39;values&#39;</span><span class="p">],</span>
+                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
+                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
+                             <span class="p">)</span>
+            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span>
                               <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span>
-                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span><span class="s1">&#39;date&#39;</span><span class="p">,</span><span class="s1">&#39;time&#39;</span><span class="p">,</span><span class="s1">&#39;stepRange&#39;</span><span class="p">,</span><span class="s1">&#39;values&#39;</span><span class="p">],</span>
-                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
-                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
-                              <span class="p">)</span>
+                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span> <span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;time&#39;</span><span class="p">,</span>
+                                        <span class="s1">&#39;stepRange&#39;</span><span class="p">,</span> <span class="s1">&#39;values&#39;</span><span class="p">],</span>
+                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
+                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
+                             <span class="p">)</span>
 
             <span class="c1"># rr for second subgrid point is identified by step = 2</span>
-            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span>
                               <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span>
-                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span><span class="s1">&#39;date&#39;</span><span class="p">,</span><span class="s1">&#39;time&#39;</span><span class="p">,</span><span class="s1">&#39;stepRange&#39;</span><span class="p">,</span><span class="s1">&#39;values&#39;</span><span class="p">],</span>
-                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
-                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;2&#39;</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
-                              <span class="p">)</span>
-            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span> <span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;time&#39;</span><span class="p">,</span>
+                                        <span class="s1">&#39;stepRange&#39;</span><span class="p">,</span> <span class="s1">&#39;values&#39;</span><span class="p">],</span>
+                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
+                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;2&#39;</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
+                             <span class="p">)</span>
+            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span>
                               <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span>
-                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span><span class="s1">&#39;date&#39;</span><span class="p">,</span><span class="s1">&#39;time&#39;</span><span class="p">,</span><span class="s1">&#39;stepRange&#39;</span><span class="p">,</span><span class="s1">&#39;values&#39;</span><span class="p">],</span>
-                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
-                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;2&#39;</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
-                              <span class="p">)</span>
+                              <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;perturbationNumber&#39;</span><span class="p">,</span> <span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;time&#39;</span><span class="p">,</span>
+                                        <span class="s1">&#39;stepRange&#39;</span><span class="p">,</span> <span class="s1">&#39;values&#39;</span><span class="p">],</span>
+                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
+                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">&#39;2&#39;</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
+                             <span class="p">)</span>
 
             <span class="n">it</span> <span class="o">=</span> <span class="n">it</span> <span class="o">+</span> <span class="mi">3</span> <span class="c1"># jump to next original time step in rr fields</span>
@@ -1625 +1640 @@
 <span class="sd">        &#39;&#39;&#39;</span>
 
-        <span class="n">gribfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">inputdir</span><span class="p">,</span><span class="s1">&#39;rr_grib_dummy.grb&#39;</span><span class="p">))</span>
+        <span class="n">gribfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">inputdir</span><span class="p">,</span> <span class="s1">&#39;rr_grib_dummy.grb&#39;</span><span class="p">))</span>
 
         <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span>
-                      <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">)</span>
+                                <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">)</span>
 
         <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span>
-                      <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">)</span>
+                                <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">)</span>
 
         <span class="k">return</span>
@@ -1663 +1678 @@
 
 <span class="sd">        &#39;&#39;&#39;</span>
-        <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
+        <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
                              <span class="n">codes_get_values</span><span class="p">,</span> <span class="n">codes_set_values</span><span class="p">,</span> <span class="n">codes_set</span><span class="p">,</span>
                              <span class="n">codes_write</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span>
@@ -1745 +1760 @@
             <span class="n">cdate_hour</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">timestamp</span><span class="p">,</span> <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">%H&#39;</span><span class="p">)</span>
 
+            <span class="c1"># if basetime is used, adapt start/end date period</span>
+            <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">basetime</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                <span class="n">time_delta</span> <span class="o">=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">hours</span><span class="o">=</span><span class="mi">12</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
+                <span class="n">start_period</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
+                                               <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">%H&#39;</span><span class="p">)</span> <span class="o">-</span> <span class="n">time_delta</span>
+                <span class="n">end_period</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
+                                             <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">%H&#39;</span><span class="p">)</span>
+
             <span class="c1"># skip all temporary times</span>
             <span class="c1"># which are outside the retrieval period</span>
@@ -1751 +1774 @@
                 <span class="k">continue</span>
 
-            <span class="c1"># if the timestamp is out of basetime start/end date period,</span>
-            <span class="c1"># skip this specific product</span>
-            <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">basetime</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">time_delta</span> <span class="o">=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">hours</span><span class="o">=</span><span class="mi">12</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
-                <span class="n">start_time</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
-                                                <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">%H&#39;</span><span class="p">)</span> <span class="o">-</span> <span class="n">time_delta</span>
-                <span class="n">end_time</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
-                                             <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">%H&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">timestamp</span> <span class="o">&lt;</span> <span class="n">start_time</span> <span class="ow">or</span> <span class="n">timestamp</span> <span class="o">&gt;</span> <span class="n">end_time</span><span class="p">:</span>
-                    <span class="k">continue</span>
 
             <span class="c1"># @WRF</span>
@@ -1782 +1795 @@
                 <span class="n">paramId</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">&#39;paramId&#39;</span><span class="p">)</span>
                 <span class="n">gridtype</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">&#39;gridType&#39;</span><span class="p">)</span>
-                <span class="n">levtype</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">&#39;typeOfLevel&#39;</span><span class="p">)</span>
                 <span class="k">if</span> <span class="n">paramId</span> <span class="o">==</span> <span class="mi">77</span><span class="p">:</span> <span class="c1"># ETADOT</span>
                     <span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fdict</span><span class="p">[</span><span class="s1">&#39;21&#39;</span><span class="p">])</span>
@@ -1866 +1878 @@
             <span class="c1"># Fortran program creates file fort.15 (with u,v,etadot,t,sp,q)</span>
             <span class="n">execute_subprocess</span><span class="p">([</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">exedir</span><span class="p">,</span>
-                                <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span>
+                                             <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span>
                                <span class="n">error_msg</span><span class="o">=</span><span class="s1">&#39;FORTRAN PROGRAM FAILED!&#39;</span><span class="p">)</span><span class="c1">#shell=True)</span>
 
@@ -1895 +1907 @@
             <span class="c1"># to the outputfile (final GRIB input files for FLEXPART)</span>
             <span class="n">orolsm</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">+</span>
-                                        <span class="s1">&#39;/OG_OROLSM__SL.*.&#39;</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">ppid</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+                                                <span class="s1">&#39;/OG_OROLSM__SL.*.&#39;</span> <span class="o">+</span>
+                                                <span class="n">c</span><span class="o">.</span><span class="n">ppid</span> <span class="o">+</span>
+                                                <span class="s1">&#39;*&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
             <span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">&#39;flux&#39;</span> <span class="o">+</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">suffix</span>
             <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">cwc</span><span class="p">:</span>
@@ -1945 +1959 @@
 <span class="sd">        &#39;&#39;&#39;</span>
         <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_grib_new_from_file</span><span class="p">,</span> <span class="n">codes_get_array</span><span class="p">,</span>
-                             <span class="n">codes_set_array</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span> <span class="n">codes_set_values</span><span class="p">,</span>
-                             <span class="n">codes_set</span><span class="p">,</span> <span class="n">codes_write</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">)</span>
+                             <span class="n">codes_set_array</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span>
+                             <span class="n">codes_set</span><span class="p">,</span> <span class="n">codes_write</span><span class="p">)</span>
 
         <span class="c1"># max number</span>
@@ -1952 +1966 @@
 
         <span class="c1"># get a list of all prepared output files with control forecast (CF)</span>
-        <span class="n">CF_filelist</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.N000&#39;</span><span class="p">)</span>
-        <span class="n">CF_filelist</span><span class="o">.</span><span class="n">files</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">CF_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">cffile</span> <span class="ow">in</span> <span class="n">CF_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">:</span>
+        <span class="n">cf_filelist</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.N000&#39;</span><span class="p">)</span>
+        <span class="n">cf_filelist</span><span class="o">.</span><span class="n">files</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">cf_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">)</span>
+
+        <span class="k">for</span> <span class="n">cffile</span> <span class="ow">in</span> <span class="n">cf_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">:</span>
             <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">cffile</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-                <span class="n">cfvalues</span><span class="o">=</span><span class="p">[]</span>
+                <span class="n">cfvalues</span> <span class="o">=</span> <span class="p">[]</span>
                 <span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
                     <span class="n">fid</span> <span class="o">=</span> <span class="n">codes_grib_new_from_file</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
@@ -2062 +2076 @@
 
         <span class="k">return</span></div></div>
-
 </pre></div>
 

Documentation/html/_modules/GribUtil.html

@@ -230 +230 @@
 
 
-<div class="viewcode-block" id="GribUtil.get_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.get_keys">[docs]</a>    <span class="k">def</span> <span class="nf">get_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[]):</span>
+<div class="viewcode-block" id="GribUtil.get_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.get_keys">[docs]</a>    <span class="k">def</span> <span class="nf">get_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="p">,</span> <span class="n">wherekeyvalues</span><span class="p">):</span>
         <span class="sd">&#39;&#39;&#39;Get keyvalues for a given list of keynames a where statement</span>
 <span class="sd">        can be given (list of key and list of values)</span>
@@ -239 +239 @@
 <span class="sd">            List of keynames.</span>
 
-<span class="sd">        wherekeynames : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd">            Default value is an empty list.</span>
-
-<span class="sd">        wherekeyvalues : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd">            Default value is an empty list.</span>
+<span class="sd">        wherekeynames : :obj:`list` of :obj:`string`</span>
+<span class="sd">            List of key names for indexing grib message parameter.</span>
+
+<span class="sd">        wherekeyvalues : :obj:`list` of :obj:`string`</span>
+<span class="sd">            List of key values corresponding the key names.</span>
 
 <span class="sd">        Return</span>
@@ -284 +284 @@
 
 
-<div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a>    <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[],</span>
-                 <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[],</span> <span class="n">strict</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">):</span>
+<div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a>    <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="p">,</span>
+                 <span class="n">wherekeyvalues</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">):</span>
         <span class="sd">&#39;&#39;&#39;Opens the file to read the grib messages and then write</span>
 <span class="sd">        the selected messages (with wherekeys) to a new output file.</span>
@@ -303 +303 @@
 <span class="sd">            Default is an empty list.</span>
 
-<span class="sd">        wherekeynames : :obj:`list` of :obj:`string`, optional</span>
+<span class="sd">        wherekeynames : :obj:`list` of :obj:`string`</span>
 <span class="sd">            List of keynames to select correct message.</span>
-<span class="sd">            Default value is an empty list.</span>
-
-<span class="sd">        wherekeyvalues : :obj:`list` of :obj:`string`, optional</span>
+
+<span class="sd">        wherekeyvalues : :obj:`list` of :obj:`string`</span>
 <span class="sd">            List of keyvalues for keynames to select correct message.</span>
-<span class="sd">            Default value is an empty list.</span>
-
-<span class="sd">        strict : :obj:`boolean`, optional</span>
-<span class="sd">            Decides if everything from keynames and keyvalues</span>
-<span class="sd">            is written out the grib file (False) or only those</span>
-<span class="sd">            meeting the where statement (True). Default is False.</span>
 
 <span class="sd">        filemode : :obj:`string`, optional</span>
@@ -362 +355 @@
         <span class="k">return</span></div>
 
-<div class="viewcode-block" id="GribUtil.copy_dummy_msg"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.copy_dummy_msg">[docs]</a>    <span class="k">def</span> <span class="nf">copy_dummy_msg</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename_in</span><span class="p">,</span> <span class="n">selectWhere</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
-                 <span class="n">keynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">keyvalues</span><span class="o">=</span><span class="p">[],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">):</span>
+<div class="viewcode-block" id="GribUtil.copy_dummy_msg"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.copy_dummy_msg">[docs]</a>    <span class="k">def</span> <span class="nf">copy_dummy_msg</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename_in</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span>
+                       <span class="n">selectwhere</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">):</span>
         <span class="sd">&#39;&#39;&#39;Add the content of another input grib file to the objects file but</span>
 <span class="sd">        only messages corresponding to keys/values passed to the function.</span>
@@ -374 +367 @@
 <span class="sd">            Filename of the input file to read the grib messages from.</span>
 
-<span class="sd">        selectWhere : :obj:`boolean`, optional</span>
+<span class="sd">        selectwhere : :obj:`boolean`, optional</span>
 <span class="sd">            Decides if to copy the keynames and values equal to (True) or</span>
 <span class="sd">            different to (False) the keynames/keyvalues list passed to the</span>
 <span class="sd">            function. Default is True.</span>
 
-<span class="sd">        keynames : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd">            List of keynames. Default is an empty list.</span>
-
-<span class="sd">        keyvalues : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd">            List of keyvalues. Default is an empty list.</span>
+<span class="sd">        keynames : :obj:`list` of :obj:`string`</span>
+<span class="sd">            List of keynames.</span>
+
+<span class="sd">        keyvalues : :obj:`list` of :obj:`string`</span>
+<span class="sd">            List of keyvalues.</span>
 
 <span class="sd">        filemode : :obj:`string`, optional</span>
@@ -416 +409 @@
                     <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Key was not defined&quot;</span><span class="p">)</span>
 
-                <span class="k">if</span> <span class="n">selectWhere</span><span class="p">:</span>
+                <span class="k">if</span> <span class="n">selectwhere</span><span class="p">:</span>
                     <span class="n">select</span> <span class="o">=</span> <span class="p">(</span><span class="n">select</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">==</span>
                                           <span class="nb">str</span><span class="p">(</span><span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">))))</span>
@@ -434 +427 @@
         <span class="k">return</span></div>
 
-<div class="viewcode-block" id="GribUtil.index"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.index">[docs]</a>    <span class="k">def</span> <span class="nf">index</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">index_keys</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;mars&quot;</span><span class="p">],</span> <span class="n">index_file</span><span class="o">=</span><span class="s2">&quot;my.idx&quot;</span><span class="p">):</span>
+<div class="viewcode-block" id="GribUtil.index"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.index">[docs]</a>    <span class="k">def</span> <span class="nf">index</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">index_keys</span><span class="p">,</span> <span class="n">index_file</span><span class="o">=</span><span class="s2">&quot;my.idx&quot;</span><span class="p">):</span>
         <span class="sd">&#39;&#39;&#39;Create index file from a list of files if it does not exist or</span>
 <span class="sd">        read an index file.</span>
@@ -440 +433 @@
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
-<span class="sd">        index_keys: :obj:`list` of :obj:`string`, optional</span>
+<span class="sd">        index_keys: :obj:`list` of :obj:`string`</span>
 <span class="sd">            Contains the list of key parameter names from</span>
 <span class="sd">            which the index is to be created.</span>
-<span class="sd">            Default is a list with a single entry string &quot;mars&quot;.</span>
 
 <span class="sd">        index_file: :obj:`string`, optional</span>

Documentation/html/_modules/MarsRetrieval.html

@@ -204 +204 @@
 
 <span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
 <span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">&#39;../&#39;</span><span class="p">)</span>
 <span class="kn">import</span> <span class="nn">_config</span>
+<span class="c1">#pylint: disable=invalid-name</span>
 <span class="k">try</span><span class="p">:</span>
     <span class="n">ec_api</span> <span class="o">=</span> <span class="kc">True</span>
@@ -217 +219 @@
 <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
     <span class="n">cds_api</span> <span class="o">=</span> <span class="kc">False</span>
+<span class="c1">#pylint: enable=invalid-name</span>
+<span class="c1">#pylint: enable=wrong-import-position</span>
 <span class="c1"># ------------------------------------------------------------------------------</span>
 <span class="c1"># CLASS</span>
@@ -672 +676 @@
                 <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n\n</span><span class="s1">MARS Request failed!&#39;</span><span class="p">)</span>
                 <span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-                <span class="n">tb</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">exc_info</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span>
                 <span class="nb">print</span><span class="p">(</span><span class="n">traceback</span><span class="o">.</span><span class="n">format_exc</span><span class="p">())</span>
                 <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">()</span>

Documentation/html/_modules/UioFiles.html

@@ -204 +204 @@
 
 <span class="c1"># software specific modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
 <span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">&#39;../&#39;</span><span class="p">)</span>
 <span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">silent_remove</span><span class="p">,</span> <span class="n">get_list_as_string</span>
+<span class="c1">#pylint: enable=wrong-import-position</span>
 
 <span class="c1"># ------------------------------------------------------------------------------</span>
@@ -212 +214 @@
 
 <div class="viewcode-block" id="UioFiles"><a class="viewcode-back" href="../Documentation/Api/api_python.html#UioFiles.UioFiles">[docs]</a><span class="k">class</span> <span class="nc">UioFiles</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;Collection of files matching a specific pattern.</span>
+    <span class="sd">&quot;&quot;&quot;Collection of files matching a specific pattern.</span>
 
 <span class="sd">    The pattern can contain regular expressions for the files.</span>
@@ -224 +226 @@
 
 <span class="sd">    pattern : str</span>
-<span class="sd">        Regular expression pattern. For example: &#39;\*.grb&#39;</span>
+<span class="sd">        Regular expression pattern. For example: &#39;*.grb&#39;</span>
 
 <span class="sd">    files : list of str</span>
 <span class="sd">        List of files matching the pattern in the path.</span>
-<span class="sd">    &#39;&#39;&#39;</span>
+<span class="sd">    &quot;&quot;&quot;</span>
     <span class="c1"># --------------------------------------------------------------------------</span>
     <span class="c1"># CLASS METHODS</span>
     <span class="c1"># --------------------------------------------------------------------------</span>
     <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">,</span> <span class="n">pattern</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Assignes a specific pattern for these files.</span>
+        <span class="sd">&quot;&quot;&quot;Assignes a specific pattern for these files.</span>
 
 <span class="sd">        Parameters</span>
@@ -241 +243 @@
 
 <span class="sd">        pattern : str</span>
-<span class="sd">            Regular expression pattern. For example: &#39;\*.grb&#39;</span>
+<span class="sd">            Regular expression pattern. For example: &#39;*.grb&#39;</span>
 
 <span class="sd">        Return</span>
 <span class="sd">        ------</span>
 
-<span class="sd">        &#39;&#39;&#39;</span>
+<span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">path</span> <span class="o">=</span> <span class="n">path</span>
@@ -258 +260 @@
 
     <span class="k">def</span> <span class="nf">_list_files</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Lists all files in the directory with the matching</span>
+        <span class="sd">&quot;&quot;&quot;Lists all files in the directory with the matching</span>
 <span class="sd">        regular expression pattern.</span>
 
@@ -269 +271 @@
 <span class="sd">        ------</span>
 
-<span class="sd">        &#39;&#39;&#39;</span>
+<span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># Get the absolute path</span>
         <span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
 
         <span class="c1"># get all files in the dir and subdir as absolut path</span>
+            <span class="c1"># pylint: disable=W0612</span>
         <span class="k">for</span> <span class="n">root</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
             <span class="k">for</span> <span class="n">filename</span> <span class="ow">in</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">filenames</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">pattern</span><span class="p">):</span>
@@ -282 +285 @@
 
     <span class="k">def</span> <span class="nf">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Converts the list of files into a single string.</span>
+        <span class="sd">&quot;&quot;&quot;Converts the list of files into a single string.</span>
 <span class="sd">        The entries are sepereated by &quot;,&quot; sign.</span>
 
@@ -292 +295 @@
 <span class="sd">        files_string : str</span>
 <span class="sd">            The content of the list as a single string.</span>
-<span class="sd">        &#39;&#39;&#39;</span>
+<span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="n">filenames</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">f</span><span class="p">)</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
@@ -301 +304 @@
 
 <div class="viewcode-block" id="UioFiles.delete_files"><a class="viewcode-back" href="../Documentation/Api/api_python.html#UioFiles.UioFiles.delete_files">[docs]</a>    <span class="k">def</span> <span class="nf">delete_files</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Deletes the files.</span>
+        <span class="sd">&quot;&quot;&quot;Deletes the files.</span>
 
 <span class="sd">        Parameters</span>
@@ -309 +312 @@
 <span class="sd">        ------</span>
 
-<span class="sd">        &#39;&#39;&#39;</span>
+<span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="k">for</span> <span class="n">old_file</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">files</span><span class="p">:</span>

Documentation/html/_modules/checks.html

@@ -191 +191 @@
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">sys</span>
-
-<span class="kn">import</span> <span class="nn">_config</span>
+<span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span>
+<span class="c1"># pylint: disable=unused-import</span>
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">import</span> <span class="nn">exceptions</span>
 <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
     <span class="kn">import</span> <span class="nn">builtins</span> <span class="k">as</span> <span class="nn">exceptions</span>
-<span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span>
+<span class="c1"># pylint: enable=unused-import</span>
+
+<span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="kn">import</span> <span class="nn">_config</span>
 <span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">silent_remove</span>
 <span class="c1"># ------------------------------------------------------------------------------</span>
@@ -275 +278 @@
     <span class="k">return</span> <span class="n">grid</span></div>
 
-<div class="viewcode-block" id="check_area"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_area">[docs]</a><span class="k">def</span> <span class="nf">check_area</span><span class="p">(</span><span class="n">grid</span><span class="p">,</span> <span class="n">area</span><span class="p">,</span> <span class="n">upper</span><span class="p">,</span> <span class="n">lower</span><span class="p">,</span> <span class="n">left</span> <span class="p">,</span> <span class="n">right</span><span class="p">):</span>
+<div class="viewcode-block" id="check_area"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_area">[docs]</a><span class="k">def</span> <span class="nf">check_area</span><span class="p">(</span><span class="n">grid</span><span class="p">,</span> <span class="n">area</span><span class="p">,</span> <span class="n">upper</span><span class="p">,</span> <span class="n">lower</span><span class="p">,</span> <span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="p">):</span>
     <span class="sd">&#39;&#39;&#39;Defines the correct area string.</span>
 
@@ -320 +323 @@
 
     <span class="c1"># determine area format</span>
-    <span class="k">if</span> <span class="p">((</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span> <span class="p">)</span> <span class="ow">and</span>
-        <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span> <span class="p">)</span> <span class="ow">and</span>
-        <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span> <span class="p">)</span> <span class="ow">and</span>
-        <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">)):</span>
+    <span class="k">if</span> <span class="nb">all</span><span class="p">([(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">),</span>
+            <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">),</span>
+            <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">),</span>
+            <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">)]):</span>
         <span class="c1"># area is defined in 1/1000 degrees; old format</span>
         <span class="n">area</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span><span class="p">,</span>
@@ -329 +332 @@
                                     <span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span><span class="p">,</span>
                                     <span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span><span class="p">)</span>
-    <span class="k">elif</span> <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span> <span class="ow">and</span>
-          <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span> <span class="ow">and</span>
-          <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span> <span class="ow">and</span>
-          <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span><span class="p">):</span>
+    <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span><span class="p">,</span>
+              <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span><span class="p">,</span>
+              <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span><span class="p">,</span>
+              <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.05</span><span class="p">]):</span>
         <span class="c1"># area is already in new format</span>
         <span class="n">area</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">),</span>
@@ -342 +345 @@
                          <span class="s1">&#39;formats (upper, lower, left, right): &#39;</span>
                          <span class="s1">&#39;</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">upper</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">lower</span><span class="p">),</span>
-                                              <span class="nb">str</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">right</span><span class="p">)))</span>
+                                              <span class="nb">str</span><span class="p">(</span><span class="n">left</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">right</span><span class="p">)))</span>
 
     <span class="k">return</span> <span class="n">area</span></div>
@@ -443 +446 @@
 
 
-<div class="viewcode-block" id="check_step"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_step">[docs]</a><span class="k">def</span> <span class="nf">check_step</span><span class="p">(</span><span class="n">step</span><span class="p">,</span> <span class="n">mailfail</span><span class="p">):</span>
+<div class="viewcode-block" id="check_step"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_step">[docs]</a><span class="k">def</span> <span class="nf">check_step</span><span class="p">(</span><span class="n">step</span><span class="p">):</span>
     <span class="sd">&#39;&#39;&#39;Checks on step format and convert into a list of steps.</span>
 
@@ -455 +458 @@
 <span class="sd">        Specifies the forecast time step from forecast base time.</span>
 <span class="sd">        Valid values are hours (HH) from forecast base time.</span>
-
-<span class="sd">    mailfail : list of str</span>
-<span class="sd">        Contains all email addresses which should be notified.</span>
-<span class="sd">        It might also contain just the ecmwf user name which will trigger</span>
-<span class="sd">        mailing to the associated email address for this user.</span>
 
 <span class="sd">    Return</span>
@@ -567 +565 @@
 <span class="sd">        Valid values are hours (HH) from forecast base time.</span>
 <span class="sd">    &#39;&#39;&#39;</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ftype</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">ftime</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">steps</span><span class="p">)):</span>
+    <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">ftype</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">ftime</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">steps</span><span class="p">):</span>
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;ERROR: The number of field types, times and steps &#39;</span>
                          <span class="s1">&#39;are not the same! Please check the setting in the &#39;</span>
@@ -715 +713 @@
                          <span class="s1">&#39;in CONTROL file.</span><span class="se">\n</span><span class="s1">&#39;</span>
                          <span class="s1">&#39;Try &quot;</span><span class="si">{}</span><span class="s1"> -h&quot; to print usage information&#39;</span>
-                         <span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="p">)</span>
+                         <span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
 
     <span class="c1"># retrieve just one day if end_date isn&#39;t set</span>
@@ -952 +950 @@
             <span class="n">accmaxstep</span> <span class="o">=</span> <span class="n">maxstep</span>
             <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... For pure forecast mode, the accumulated forecast must &#39;</span>
-                          <span class="s1">&#39;have the same maxstep as the normal forecast fields!</span><span class="se">\n</span><span class="s1">&#39;</span>
-                          <span class="s1">&#39;</span><span class="se">\t\t</span><span class="s1"> Accmaxstep was set to maxstep!&#39;</span><span class="p">)</span>
+                  <span class="s1">&#39;have the same maxstep as the normal forecast fields!</span><span class="se">\n</span><span class="s1">&#39;</span>
+                  <span class="s1">&#39;</span><span class="se">\t\t</span><span class="s1"> Accmaxstep was set to maxstep!&#39;</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">accmaxstep</span></div>
 
@@ -1013 +1011 @@
 
 
-<div class="viewcode-block" id="check_number"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_number">[docs]</a><span class="k">def</span> <span class="nf">check_number</span><span class="p">(</span><span class="n">number</span><span class="p">,</span> <span class="n">mailfail</span><span class="p">):</span>
+<div class="viewcode-block" id="check_number"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_number">[docs]</a><span class="k">def</span> <span class="nf">check_number</span><span class="p">(</span><span class="n">number</span><span class="p">):</span>
     <span class="sd">&#39;&#39;&#39;Check for correct string format of ensemble member numbers.</span>
 
@@ -1020 +1018 @@
 <span class="sd">    number : str</span>
 <span class="sd">        List of ensemble member forecast runs.</span>
-
-<span class="sd">    mailfail : list of str</span>
-<span class="sd">        Contains all email addresses which should be notified.</span>
-<span class="sd">        It might also contain just the ecmwf user name which will trigger</span>
-<span class="sd">        mailing to the associated email address for this user.</span>
 
 <span class="sd">    Return</span>

Documentation/html/_modules/disaggregation.html

@@ -409 +409 @@
             <span class="c1"># geometric mean, restricted such that non-negativity is guaranteed</span>
             <span class="c1"># according to Eq. (25)</span>
-            <span class="n">fip1</span><span class="o">=</span><span class="nb">min</span><span class="p">(</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="p">,</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span> <span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="p">)</span>
+            <span class="n">fip1</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
 
             <span class="c1"># the function value at the first sub-grid point (fi1) is determined</span>
@@ -443 +443 @@
                 <span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
                 <span class="c1"># substituting (fim1) with (fmon), see Eq. (27), (28) and (29)</span>
-                <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
-                           <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> \
-                           <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
-                                         <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+                <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">],</span>
+                           <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">],</span>
+                           <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+                                       <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
 
                 <span class="c1"># recomputation of the sub-grid interval values while the</span>
@@ -457 +457 @@
                 <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span><span class="o">+</span><span class="p">(</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="n">fmon</span><span class="p">)</span><span class="o">/</span><span class="mf">3.</span>
 
-            <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">])</span>
+            <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">])</span>
 
         <span class="c1"># otherwise the sub-grid values are calculated and added to the list</span>
@@ -468 +468 @@
             <span class="c1"># geometric mean, restricted such that non-negativity is guaranteed</span>
             <span class="c1"># according to Eq. (25)</span>
-            <span class="n">fip1</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="p">,</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span> <span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="p">)</span>
+            <span class="n">fip1</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
 
             <span class="c1"># the function value at the first sub-grid point (fi1) is determined</span>
@@ -486 +486 @@
                 <span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
                 <span class="c1"># substituting (fim1) with fmon, see Eq. (27), (28) and (29)</span>
-                <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
-                           <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> \
-                           <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
-                                         <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+                <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">],</span>
+                           <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">],</span>
+                           <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+                                       <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
 
                 <span class="c1"># recomputation of the sub-grid interval values while the</span>
@@ -520 +520 @@
             <span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
             <span class="c1"># substituting (fim1) with (fmon), see Eq. (27), (28) and (29)</span>
-            <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span> \
-                       <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
-                       <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
-                                     <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+            <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span>
+                       <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span>
+                       <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+                                   <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
 
             <span class="c1"># recomputation of the sub-grid interval values while the</span>
@@ -534 +534 @@
             <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span><span class="o">+</span><span class="p">(</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="n">fmon</span><span class="p">)</span><span class="o">/</span><span class="mf">3.</span>
 
-        <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">])</span>
+        <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">])</span>
 
     <span class="c1"># otherwise the sub-grid values are calculated and added to the list</span>
@@ -559 +559 @@
             <span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
             <span class="c1"># substituting (fim1) with (fmon), see Eq. (27), (28) and (29)</span>
-            <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span> \
-                       <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
-                       <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
-                                     <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+            <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span>
+                       <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span>
+                       <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+                                   <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
 
             <span class="c1"># recomputation of the sub-grid interval values while the</span>

Documentation/html/_modules/get_mars_data.html

@@ -232 +232 @@
 <span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span>
     <span class="n">inspect</span><span class="o">.</span><span class="n">getfile</span><span class="p">(</span><span class="n">inspect</span><span class="o">.</span><span class="n">currentframe</span><span class="p">())))</span> <span class="o">+</span> <span class="s1">&#39;/../&#39;</span><span class="p">)</span>
+<span class="c1"># pylint: disable=wrong-import-position</span>
 <span class="kn">import</span> <span class="nn">_config</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span>
-                   <span class="n">read_ecenv</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">)</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">)</span>
 <span class="kn">from</span> <span class="nn">Classes.EcFlexpart</span> <span class="k">import</span> <span class="n">EcFlexpart</span>
 <span class="kn">from</span> <span class="nn">Classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
 <span class="kn">from</span> <span class="nn">Classes.MarsRetrieval</span> <span class="k">import</span> <span class="n">MarsRetrieval</span>
-
+<span class="c1"># pylint: enable=wrong-import-position</span>
+<span class="c1"># pylint: disable=invalid-name</span>
 <span class="k">try</span><span class="p">:</span>
     <span class="n">ec_api</span> <span class="o">=</span> <span class="kc">True</span>
@@ -250 +251 @@
 <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
     <span class="n">cds_api</span> <span class="o">=</span> <span class="kc">False</span>
+<span class="c1"># pylint: enable=invalid-name</span>
 <span class="c1"># ------------------------------------------------------------------------------</span>
 <span class="c1"># FUNCTION</span>
@@ -385 +387 @@
 
 <div class="viewcode-block" id="check_dates_for_nonflux_fc_times"><a class="viewcode-back" href="../Documentation/Api/api_python.html#get_mars_data.check_dates_for_nonflux_fc_times">[docs]</a><span class="k">def</span> <span class="nf">check_dates_for_nonflux_fc_times</span><span class="p">(</span><span class="n">types</span><span class="p">,</span> <span class="n">times</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-    <span class="k">for</span> <span class="n">ty</span><span class="p">,</span> <span class="n">ti</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">types</span><span class="p">,</span><span class="n">times</span><span class="p">):</span>
+    <span class="sd">&#39;&#39;&#39;Checks if the time 18UTC corresponds to forecast field.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    types : list of str</span>
+<span class="sd">        List of field types.</span>
+
+<span class="sd">    times : list of str or str</span>
+<span class="sd">        The time in hours of the field.</span>
+
+<span class="sd">    Return</span>
+<span class="sd">    ------</span>
+<span class="sd">    True or False</span>
+
+<span class="sd">    &#39;&#39;&#39;</span>
+    <span class="k">for</span> <span class="n">ty</span><span class="p">,</span> <span class="n">ti</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">types</span><span class="p">,</span> <span class="n">times</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">ty</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;FC&#39;</span> <span class="ow">and</span> <span class="nb">int</span><span class="p">(</span><span class="n">ti</span><span class="p">)</span> <span class="o">==</span> <span class="mi">18</span><span class="p">:</span>
             <span class="k">return</span> <span class="kc">True</span>
@@ -407 +422 @@
 
 <span class="sd">    Since for basetime the extraction contains the 12 hours upfront,</span>
-<span class="sd">    if basetime is 0, the starting date has to be the day before and</span>
+<span class="sd">    if basetime is 0, the starting date has to be the day before</span>
 
 <span class="sd">    Parameters</span>

Documentation/html/_modules/install.html

@@ -230 +230 @@
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">glob</span>
 <span class="kn">import</span> <span class="nn">subprocess</span>
-<span class="kn">import</span> <span class="nn">inspect</span>
 <span class="kn">import</span> <span class="nn">tarfile</span>
 <span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span>
@@ -341 +339 @@
 
 <span class="sd">    &#39;&#39;&#39;</span>
-    <span class="kn">import</span> <span class="nn">tarfile</span>
 
     <span class="n">tarball_name</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">&#39;.tar&#39;</span>
     <span class="n">tar_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">,</span> <span class="n">tarball_name</span><span class="p">)</span>
 
-    <span class="n">mk_compilejob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span>
-                  <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
-
-    <span class="n">mk_job_template</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span>
-                    <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
+    <span class="n">mk_compilejob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
+
+    <span class="n">mk_job_template</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
 
     <span class="n">mk_env_vars</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">)</span>
@@ -367 +362 @@
     <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Job compilation script has been submitted to ecgate for &#39;</span> <span class="o">+</span>
           <span class="s1">&#39;installation in &#39;</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">+</span>
-           <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">)</span>
+          <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">)</span>
     <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;You should get an email with subject &quot;flexcompile&quot; within &#39;</span> <span class="o">+</span>
           <span class="s1">&#39;the next few minutes!&#39;</span><span class="p">)</span>
@@ -386 +381 @@
 
 <span class="sd">    &#39;&#39;&#39;</span>
-    <span class="kn">import</span> <span class="nn">tarfile</span>
 
     <span class="n">tar_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">,</span>
                             <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">&#39;.tar&#39;</span><span class="p">)</span>
 
-    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="p">:</span>
+    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">:</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: installdir has not been specified&#39;</span><span class="p">)</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;flex_extract will be installed in here by compiling the &#39;</span> <span class="o">+</span>
@@ -403 +397 @@
             <span class="n">mk_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
             <span class="n">make_dir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
-                                   <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
+                                  <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
             <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
-                                   <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
+                                  <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
             <span class="n">un_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span>
             <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
-                                   <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
+                                  <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
                                   <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">))</span>
 
@@ -448 +442 @@
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;target: &#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;please specify correct installation target &#39;</span> <span class="o">+</span>
-              <span class="nb">str</span><span class="p">(</span><span class="n">INSTALL_TARGETS</span><span class="p">))</span>
+              <span class="nb">str</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">INSTALL_TARGETS</span><span class="p">))</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;use -h or --help for help&#39;</span><span class="p">)</span>
         <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
@@ -496 +490 @@
 
 <span class="sd">    &#39;&#39;&#39;</span>
-    <span class="kn">from</span> <span class="nn">glob</span> <span class="k">import</span> <span class="n">glob</span>
 
     <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Create tarball ...&#39;</span><span class="p">)</span>
@@ -507 +500 @@
     <span class="c1"># get lists of the files to be added to the tar file</span>
     <span class="k">if</span> <span class="n">target</span> <span class="o">==</span> <span class="s1">&#39;local&#39;</span><span class="p">:</span>
-        <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="n">ecmwf_env_file</span> <span class="o">=</span> <span class="p">[]</span>
         <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
                    <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
                                      <span class="s1">&#39;run_local.sh&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="k">else</span><span class="p">:</span>
-        <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_ECMWF_ENV</span><span class="p">]</span>
+        <span class="n">ecmwf_env_file</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_ECMWF_ENV</span><span class="p">]</span>
         <span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
-                       <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
-                                         <span class="s1">&#39;run.sh&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+                   <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
+                                     <span class="s1">&#39;run.sh&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
 
     <span class="n">pyfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
                <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">pytestfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
-               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHONTEST_SRC</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+                   <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHONTEST_SRC</span><span class="p">,</span> <span class="s1">&#39;*py&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">controlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
                     <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_CONTROLFILES</span><span class="p">,</span>
                                       <span class="s1">&#39;CONTROL*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">testfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
-                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span> <span class="p">,</span> <span class="s1">&#39;*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span><span class="p">,</span> <span class="s1">&#39;*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">tempfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
-                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*.temp&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">&#39;*.temp&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">nlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
-                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*.nl&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">&#39;*.nl&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">gribtable</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
-                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">&#39;*grib*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">&#39;*grib*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">ffiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
-              <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.f*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+              <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.f90&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     <span class="n">hfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;*.h&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
@@ -542 +535 @@
     <span class="c1"># concatenate single lists to one for a better looping</span>
     <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">nlfiles</span> <span class="o">+</span> \
-               <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ECMWF_ENV_FILE</span> <span class="o">+</span> \
+               <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ecmwf_env_file</span> <span class="o">+</span> \
                <span class="n">runfile</span> <span class="o">+</span> <span class="n">jobdir</span> <span class="o">+</span> <span class="n">testfiles</span> <span class="o">+</span>\
                <span class="p">[</span><span class="s1">&#39;CODE_OF_CONDUCT.md&#39;</span><span class="p">,</span> <span class="s1">&#39;LICENSE.md&#39;</span><span class="p">,</span> <span class="s1">&#39;README.md&#39;</span><span class="p">]</span>
 
     <span class="c1"># create installation tar-file</span>
-    <span class="n">exclude_files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.ksh&quot;</span><span class="p">]</span>
+    <span class="n">exclude_files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.ksh&quot;</span><span class="p">,</span> <span class="s2">&quot;.tar&quot;</span><span class="p">]</span>
     <span class="k">try</span><span class="p">:</span>
         <span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="s2">&quot;w:gz&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">filelist</span><span class="p">:</span>
-                <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">file</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+            <span class="k">for</span> <span class="n">filename</span> <span class="ow">in</span> <span class="n">filelist</span><span class="p">:</span>
+                <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                                <span class="nb">filter</span><span class="o">=</span><span class="k">lambda</span> <span class="n">tarinfo</span><span class="p">:</span> <span class="kc">None</span>
-                                      <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">tarinfo</span><span class="o">.</span><span class="n">name</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
-                                         <span class="ow">in</span> <span class="n">exclude_files</span>
-                                      <span class="k">else</span> <span class="n">tarinfo</span><span class="p">)</span>
+                               <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">tarinfo</span><span class="o">.</span><span class="n">name</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
+                               <span class="ow">in</span> <span class="n">exclude_files</span>
+                               <span class="k">else</span> <span class="n">tarinfo</span><span class="p">)</span>
     <span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+
         <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to create the tar-file &#39;</span> <span class="o">+</span>
-                     <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
+                 <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
 
     <span class="k">return</span></div>
@@ -584 +579 @@
     <span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
         <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file &#39;</span> <span class="o">+</span>
-                     <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
+                 <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
     <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR CODE: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
@@ -627 +622 @@
                                          <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
 
-        <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
-                                             <span class="n">user_group</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
-                                             <span class="n">gateway_name</span> <span class="o">=</span> <span class="n">gateway</span><span class="p">,</span>
-                                             <span class="n">destination_name</span> <span class="o">=</span> <span class="n">destination</span>
-                                             <span class="p">)</span>
+        <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span><span class="o">=</span><span class="n">ecuid</span><span class="p">,</span>
+                                             <span class="n">user_group</span><span class="o">=</span><span class="n">ecgid</span><span class="p">,</span>
+                                             <span class="n">gateway_name</span><span class="o">=</span><span class="n">gateway</span><span class="p">,</span>
+                                             <span class="n">destination_name</span><span class="o">=</span><span class="n">destination</span>
+                                            <span class="p">)</span>
     <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
@@ -656 +651 @@
     <span class="k">return</span></div>
 
-<div class="viewcode-block" id="mk_compilejob"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_compilejob">[docs]</a><span class="k">def</span> <span class="nf">mk_compilejob</span><span class="p">(</span><span class="n">makefile</span><span class="p">,</span> <span class="n">target</span><span class="p">,</span> <span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
+<div class="viewcode-block" id="mk_compilejob"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_compilejob">[docs]</a><span class="k">def</span> <span class="nf">mk_compilejob</span><span class="p">(</span><span class="n">makefile</span><span class="p">,</span> <span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
     <span class="sd">&#39;&#39;&#39;Modifies the original job template file so that it is specified</span>
 <span class="sd">    for the user and the environment were it will be applied. Result</span>
@@ -666 +661 @@
 <span class="sd">        Name of the makefile which should be used to compile FORTRAN</span>
 <span class="sd">        CONVERT2 program.</span>
-
-<span class="sd">    target : str</span>
-<span class="sd">        The target where the installation should be done, e.g. the queue.</span>
 
 <span class="sd">    ecuid : str</span>
@@ -697 +689 @@
 
         <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
-            <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
-            <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
-            <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
-            <span class="n">fp_root_scripts</span> <span class="o">=</span> <span class="n">fp_root</span><span class="p">,</span>
-            <span class="n">makefile</span> <span class="o">=</span> <span class="n">makefile</span><span class="p">,</span>
-            <span class="n">fortran_program</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span>
+            <span class="n">usergroup</span><span class="o">=</span><span class="n">ecgid</span><span class="p">,</span>
+            <span class="n">username</span><span class="o">=</span><span class="n">ecuid</span><span class="p">,</span>
+            <span class="n">version_number</span><span class="o">=</span><span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
+            <span class="n">fp_root_scripts</span><span class="o">=</span><span class="n">fp_root</span><span class="p">,</span>
+            <span class="n">makefile</span><span class="o">=</span><span class="n">makefile</span><span class="p">,</span>
+            <span class="n">fortran_program</span><span class="o">=</span><span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span>
         <span class="p">)</span>
     <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
@@ -731 +723 @@
     <span class="k">return</span></div>
 
-<div class="viewcode-block" id="mk_job_template"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_job_template">[docs]</a><span class="k">def</span> <span class="nf">mk_job_template</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">gateway</span><span class="p">,</span> <span class="n">destination</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
+<div class="viewcode-block" id="mk_job_template"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_job_template">[docs]</a><span class="k">def</span> <span class="nf">mk_job_template</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
     <span class="sd">&#39;&#39;&#39;Modifies the original job template file so that it is specified</span>
 <span class="sd">    for the user and the environment were it will be applied. Result</span>
@@ -743 +735 @@
 <span class="sd">    ecgid : str</span>
 <span class="sd">        The group id on ECMWF server.</span>
-
-<span class="sd">    gateway : str</span>
-<span class="sd">        The gateway server the user is using.</span>
-
-<span class="sd">    destination : str</span>
-<span class="sd">        The remote destination which is used to transfer files</span>
-<span class="sd">        from ECMWF server to local gateway server.</span>
 
 <span class="sd">    fp_root : str</span>
@@ -777 +762 @@
 
         <span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
-            <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
-            <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
-            <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
-            <span class="n">fp_root_path</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">,</span>
+            <span class="n">usergroup</span><span class="o">=</span><span class="n">ecgid</span><span class="p">,</span>
+            <span class="n">username</span><span class="o">=</span><span class="n">ecuid</span><span class="p">,</span>
+            <span class="n">version_number</span><span class="o">=</span><span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
+            <span class="n">fp_root_path</span><span class="o">=</span><span class="n">fp_root_path_to_python</span><span class="p">,</span>
         <span class="p">)</span>
     <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
@@ -873 +858 @@
         <span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
     <span class="k">else</span><span class="p">:</span>
-        <span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">&#39;ls&#39;</span><span class="p">,</span> <span class="s1">&#39;-l&#39;</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span>
-                            <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span> <span class="n">error_msg</span><span class="o">=</span>
-                           <span class="s1">&#39;FORTRAN EXECUTABLE COULD NOT BE FOUND!&#39;</span><span class="p">)</span>
+        <span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">&#39;ls&#39;</span><span class="p">,</span> <span class="s1">&#39;-l&#39;</span><span class="p">,</span>
+                            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span>
+                           <span class="n">error_msg</span><span class="o">=</span><span class="s1">&#39;FORTRAN EXECUTABLE COULD NOT BE FOUND!&#39;</span><span class="p">)</span>
 
     <span class="k">return</span></div>

Documentation/html/_modules/prepare_flexpart.html

@@ -200 +200 @@
 <span class="c1">#    http://creativecommons.org/licenses/by/4.0/ or send a letter to</span>
 <span class="c1">#    Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</span>
-<span class="c1">#*******************************************************************************</span>
+<span class="c1"># *******************************************************************************</span>
+<span class="c1"># pylint: disable=ungrouped-imports</span>
+<span class="c1"># not necessary that we group the imports</span>
 <span class="sd">&#39;&#39;&#39;This script prepares the final version of the grib files which are</span>
 <span class="sd">then used by FLEXPART.</span>
@@ -230 +232 @@
 <span class="kn">import</span> <span class="nn">inspect</span>
 <span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">socket</span>
 
 <span class="c1"># software specific classes and modules from flex_extract</span>
@@ -236 +237 @@
 <span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span>
     <span class="n">inspect</span><span class="o">.</span><span class="n">getfile</span><span class="p">(</span><span class="n">inspect</span><span class="o">.</span><span class="n">currentframe</span><span class="p">())))</span> <span class="o">+</span> <span class="s1">&#39;/../&#39;</span><span class="p">)</span>
-<span class="kn">import</span> <span class="nn">_config</span>
+<span class="c1"># pylint: disable=wrong-import-position</span>
+<span class="c1">#import _config</span>
 <span class="kn">from</span> <span class="nn">Mods.checks</span> <span class="k">import</span> <span class="n">check_ppid</span>
 <span class="kn">from</span> <span class="nn">Classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
-<span class="kn">from</span> <span class="nn">Classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">clean_up</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span>
-                        <span class="n">read_ecenv</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">)</span>
+<span class="c1">#from Classes.ControlFile import ControlFile</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">clean_up</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">)</span>
 <span class="kn">from</span> <span class="nn">Classes.EcFlexpart</span> <span class="k">import</span> <span class="n">EcFlexpart</span>
+<span class="c1"># pylint: enable=wrong-import-position</span>
 
 <span class="c1"># ------------------------------------------------------------------------------</span>
@@ -308 +310 @@
 
     <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Prepare &#39;</span> <span class="o">+</span> <span class="n">start</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">)</span> <span class="o">+</span>
-           <span class="s2">&quot;/to/&quot;</span> <span class="o">+</span> <span class="n">end</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">))</span>
+          <span class="s1">&#39;/to/&#39;</span> <span class="o">+</span> <span class="n">end</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">&quot;%Y%m</span><span class="si">%d</span><span class="s2">&quot;</span><span class="p">))</span>
 
     <span class="c1"># create output dir if necessary</span>
@@ -333 +335 @@
     <span class="n">flexpart</span><span class="o">.</span><span class="n">process_output</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
 
-    <span class="c1"># make use of a possible conversion to a</span>
-    <span class="c1"># specific flexpart binary format</span>
-    <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">grib2flexpart</span><span class="p">:</span>
-        <span class="n">flexpart</span><span class="o">.</span><span class="n">prepare_fp_files</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
-
     <span class="c1"># check if in debugging mode, then store all files</span>
     <span class="c1"># otherwise delete temporary files</span>

Documentation/html/_modules/submit.html

@@ -226 +226 @@
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">subprocess</span>
-<span class="kn">import</span> <span class="nn">inspect</span>
-<span class="kn">import</span> <span class="nn">collections</span>
 <span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
 
 <span class="c1"># software specific classes and modules from flex_extract</span>
 <span class="kn">import</span> <span class="nn">_config</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span>
-                         <span class="n">submit_job_to_ecserver</span><span class="p">,</span> <span class="n">read_ecenv</span><span class="p">)</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span>
+                        <span class="n">submit_job_to_ecserver</span><span class="p">)</span>
 <span class="kn">from</span> <span class="nn">Mods.get_mars_data</span> <span class="k">import</span> <span class="n">get_mars_data</span>
 <span class="kn">from</span> <span class="nn">Mods.prepare_flexpart</span> <span class="k">import</span> <span class="n">prepare_flexpart</span>
-<span class="kn">from</span> <span class="nn">Classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span>
+<span class="c1">#from Classes.ControlFile import ControlFile</span>
 
 

Documentation/html/_modules/tools.html

@@ -231 +231 @@
 <span class="kn">import</span> <span class="nn">subprocess</span>
 <span class="kn">import</span> <span class="nn">traceback</span>
+<span class="c1"># pylint: disable=unused-import</span>
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">import</span> <span class="nn">exceptions</span>
 <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
     <span class="kn">import</span> <span class="nn">builtins</span> <span class="k">as</span> <span class="nn">exceptions</span>
+<span class="c1"># pylint: enable=unused-import</span>
 <span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
 <span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span>
@@ -430 +432 @@
 <span class="sd">        and destination for ECMWF server environments.</span>
 <span class="sd">    &#39;&#39;&#39;</span>
-    <span class="n">envs</span><span class="o">=</span> <span class="p">{}</span>
+    <span class="n">envs</span> <span class="o">=</span> <span class="p">{}</span>
     <span class="k">try</span><span class="p">:</span>
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filepath</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
@@ -441 +443 @@
 
         <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">... Error occured while trying to read ECMWF_ENV &#39;</span>
-                     <span class="s1">&#39;file: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">filepath</span><span class="p">))</span>
+                 <span class="s1">&#39;file: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">filepath</span><span class="p">))</span>
 
     <span class="k">return</span> <span class="n">envs</span></div>
@@ -464 +466 @@
     <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;... clean inputdir!&quot;</span><span class="p">)</span>
 
-    <span class="n">cleanlist</span> <span class="o">=</span> <span class="p">[</span><span class="n">file</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="s2">&quot;*&quot;</span><span class="p">))</span>
-                 <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">file</span><span class="p">)</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">prefix</span><span class="p">)]</span>
+    <span class="n">cleanlist</span> <span class="o">=</span> <span class="p">[</span><span class="n">filename</span> <span class="k">for</span> <span class="n">filename</span> <span class="ow">in</span>
+                 <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="s2">&quot;*&quot;</span><span class="p">))</span>
+                 <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">prefix</span><span class="p">)]</span>
 
     <span class="k">if</span> <span class="n">cleanlist</span><span class="p">:</span>
@@ -533 +536 @@
                                  <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span>
                                  <span class="n">bufsize</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="n">pout</span> <span class="o">=</span> <span class="n">p</span><span class="o">.</span><span class="n">communicate</span><span class="p">(</span><span class="nb">input</span><span class="o">=</span><span class="n">message</span><span class="o">.</span><span class="n">encode</span><span class="p">()</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n\n</span><span class="s1">&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+            <span class="n">pout</span> <span class="o">=</span> <span class="n">p</span><span class="o">.</span><span class="n">communicate</span><span class="p">(</span><span class="nb">input</span><span class="o">=</span><span class="n">message</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n\n</span><span class="s1">&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
         <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
             <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;... ERROR: &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
@@ -693 +696 @@
         <span class="k">return</span> <span class="p">[]</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">pars</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-        <span class="n">pars</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
+        <span class="n">pars</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
 
     <span class="n">cpar</span> <span class="o">=</span> <span class="n">pars</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>
@@ -737 +740 @@
         <span class="k">return</span> <span class="p">[]</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">pars</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-        <span class="n">pars</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
+        <span class="n">pars</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
 
     <span class="n">cpar</span> <span class="o">=</span> <span class="n">pars</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>
@@ -930 +933 @@
 
         <span class="c1"># information needed from grib message</span>
-        <span class="n">keys</span> <span class="o">=</span> <span class="p">[</span>
-                <span class="s1">&#39;Ni&#39;</span><span class="p">,</span>
+        <span class="n">keys</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;Ni&#39;</span><span class="p">,</span>
                 <span class="s1">&#39;Nj&#39;</span><span class="p">,</span>
                 <span class="s1">&#39;latitudeOfFirstGridPointInDegrees&#39;</span><span class="p">,</span>
@@ -945 +947 @@
         <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
             <span class="c1"># Get the value of the key in a grib message.</span>
-            <span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span><span class="n">key</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%s</span><span class="s2"> = </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">key</span><span class="p">,</span><span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
+            <span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
+            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%s</span><span class="s2"> = </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
 
         <span class="c1"># Free the memory for the message referred as gribid.</span>

Documentation/html/_sources/index.rst.txt

@@ -42 +42 @@
           <h2><a href="documentation.html">Documentation</a></h2>
           <ul>
-            <li><a href="">Content</a></li>
-            <li><a href="">Configuration</a></li>
-            <li><a href="">Tutorials</a></li>
+            <li><a href="Documentation/overview.html">Overview</a></li>
+            <li><a href="Documentation/input.html">Control & Input Data</a></li>
+            <li><a href="Documentation/output.html">Output Data</a></li>
           </ul>
         </td>
@@ -55 +55 @@
           <h2><a href="quick_start.html">Quick Start</a></h2>
           <ul>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
+            <li><a href="quick_start.html#job-preparation">Job preparation</a></li>
+            <li><a href="quick_start.html#selection-and-adjustment-of-control-files">Handling CONTROL files</a></li>
+            <li><a href="quick_start.html#hints-for-definition-of-some-parameter-combinations">Hints on parameter combinations</a></li>
           </ul>
         </td>  
@@ -66 +66 @@
           <h2><a href="evaluation.html">Evaluation</a></h2>
           <ul>
-            <li><a href="">Code</a></li>
-            <li><a href="">Functionality</a></li>
-            <li><a href="">Regression</a></li>
+            <li><a href="Evaluation/staticcode.html">Code</a></li>
+            <li><a href="Evaluation/testcases.html">Functionality</a></li>
+            <li><a href="Evaluation/metrics.html">Regression</a></li>
           </ul>
         </td> 
@@ -77 +77 @@
           <h2><a href="dev_guide.html">Developer</a></h2>
           <ul>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
+            <li><a href="Developers/gen_docu.html">Update Documentation</a></li>
+            <li><a href=""></a><Placeholder></li>
+            <li><a href=""></a><Placeholder></li>
           </ul>
         </td>

Documentation/html/genindex.html

@@ -482 +482 @@
       <li><a href="Documentation/Api/api_python.html#EcFlexpart.EcFlexpart.glevelist">glevelist (EcFlexpart.EcFlexpart attribute)</a>
 </li>
-      <li><a href="Documentation/Api/api_python.html#ControlFile.ControlFile.grib2flexpart">grib2flexpart (ControlFile.ControlFile attribute)</a>
-</li>
       <li><a href="Documentation/Api/api_python.html#GribUtil.GribUtil">GribUtil (class in GribUtil)</a>
 

Documentation/html/index.html

@@ -196 +196 @@
       <h2><a href="documentation.html">Documentation</a></h2>
       <ul>
-        <li><a href="">Content</a></li>
-        <li><a href="">Configuration</a></li>
-        <li><a href="">Tutorials</a></li>
+        <li><a href="Documentation/overview.html">Overview</a></li>
+        <li><a href="Documentation/input.html">Control & Input Data</a></li>
+        <li><a href="Documentation/output.html">Output Data</a></li>
       </ul>
     </td>
@@ -209 +209 @@
       <h2><a href="quick_start.html">Quick Start</a></h2>
       <ul>
-        <li><a href="">...</a></li>
-        <li><a href="">...</a></li>
-        <li><a href="">...</a></li>
+        <li><a href="quick_start.html#job-preparation">Job preparation</a></li>
+        <li><a href="quick_start.html#selection-and-adjustment-of-control-files">Handling CONTROL files</a></li>
+        <li><a href="quick_start.html#hints-for-definition-of-some-parameter-combinations">Hints on parameter combinations</a></li>
       </ul>
     </td>
@@ -220 +220 @@
       <h2><a href="evaluation.html">Evaluation</a></h2>
       <ul>
-        <li><a href="">Code</a></li>
-        <li><a href="">Functionality</a></li>
-        <li><a href="">Regression</a></li>
+        <li><a href="Evaluation/staticcode.html">Code</a></li>
+        <li><a href="Evaluation/testcases.html">Functionality</a></li>
+        <li><a href="Evaluation/metrics.html">Regression</a></li>
       </ul>
     </td>
@@ -231 +231 @@
       <h2><a href="dev_guide.html">Developer</a></h2>
       <ul>
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Documentation","Fortran\u2019s Auto Generated Documentation","Python\u2019s Auto Generated Documentation","CONTROL file changes","The Compilation Jobscript <code class=\"docutils literal notranslate\"><span class=\"pre\">compilejob.ksh</span></code>","The CONTROL file","The CONTROL parameters","ECMWF User Credential file <code class=\"docutils literal notranslate\"><span class=\"pre\">ECMWF_ENV</span></code>","CONTROL file examples","The Fortran Makefile - <code class=\"docutils literal notranslate\"><span class=\"pre\">CONVERT2</span></code>","The Jobscript <code class=\"docutils literal notranslate\"><span class=\"pre\">job.ksh</span></code>","The executable Script - <code class=\"docutils literal notranslate\"><span class=\"pre\">run.sh</span></code>","The Installation Script - <code class=\"docutils literal notranslate\"><span class=\"pre\">setup.sh</span></code>","Templates","Application Modes","Program Flow","Auto Generated Documentation","Disaggregation of Flux Data","Control &amp; Input Data","Output Data","Overview","Vertical Coordinate","Access Modes","Link Collection for Quick finder","Hints to specify dataset retrieval","Available Datasets for Member State users","Available Datasets for Public users","Metrics","Static Code Analysis","Testcases","Gateway mode installation","Local mode installation","Remote mode installation","FAQ - Frequently asked questions","Known Bugs and Issues","Developer Team","Changelog","Developer Guide","Documentation","ECMWF Data","Evaluation","Welcome to <code class=\"docutils literal notranslate\"><span class=\"pre\">flex_extract</span></code>\u2019s user documentation!","Installation","Quick 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For_developers/Sphinx/source/index.rst

@@ -42 +42 @@
           <h2><a href="documentation.html">Documentation</a></h2>
           <ul>
-            <li><a href="">Content</a></li>
-            <li><a href="">Configuration</a></li>
-            <li><a href="">Tutorials</a></li>
+            <li><a href="Documentation/overview.html">Overview</a></li>
+            <li><a href="Documentation/input.html">Control & Input Data</a></li>
+            <li><a href="Documentation/output.html">Output Data</a></li>
           </ul>
         </td>
@@ -55 +55 @@
           <h2><a href="quick_start.html">Quick Start</a></h2>
           <ul>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
+            <li><a href="quick_start.html#job-preparation">Job preparation</a></li>
+            <li><a href="quick_start.html#selection-and-adjustment-of-control-files">Handling CONTROL files</a></li>
+            <li><a href="quick_start.html#hints-for-definition-of-some-parameter-combinations">Hints on parameter combinations</a></li>
           </ul>
         </td>  
@@ -66 +66 @@
           <h2><a href="evaluation.html">Evaluation</a></h2>
           <ul>
-            <li><a href="">Code</a></li>
-            <li><a href="">Functionality</a></li>
-            <li><a href="">Regression</a></li>
+            <li><a href="Evaluation/staticcode.html">Code</a></li>
+            <li><a href="Evaluation/testcases.html">Functionality</a></li>
+            <li><a href="Evaluation/metrics.html">Regression</a></li>
           </ul>
         </td> 
@@ -77 +77 @@
           <h2><a href="dev_guide.html">Developer</a></h2>
           <ul>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
-            <li><a href="">...</a></li>
+            <li><a href="Developers/gen_docu.html">Update Documentation</a></li>
+            <li><a href=""></a><Placeholder></li>
+            <li><a href=""></a><Placeholder></li>
           </ul>
         </td>