Changeset 838af6d in flex_extract.git


Ignore:
Timestamp:
Aug 12, 2020, 9:23:10 AM (4 years ago)
Author:
anphi <anne.philipp@…>
Branches:
master, ctbto, dev
Children:
ec89943
Parents:
4f0a73c (diff), 73308e0 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge branch 'dev'

Files:
5 added
2 deleted
55 edited

Legend:

Unmodified
Added
Removed
  • Documentation/html/Documentation/Api/api_python.html

    r6931f61 r08c9091  
    248248
    249249<dl class="function">
    250 <dt id="install.del_convert_build">
    251 <code class="sig-prename descclassname">install.</code><code class="sig-name descname">del_convert_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#del_convert_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.del_convert_build" title="Permalink to this definition">¶</a></dt>
     250<dt id="install.del_fortran_build">
     251<code class="sig-prename descclassname">install.</code><code class="sig-name descname">del_fortran_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#del_fortran_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.del_fortran_build" title="Permalink to this definition">¶</a></dt>
    252252<dd><p>Clean up the Fortran source directory and remove all
    253 build files (e.g. *.o, *.mod and CONVERT2)</p>
     253build files (e.g. *.o, *.mod and FORTRAN EXECUTABLE)</p>
    254254<dl class="field-list simple">
    255255<dt class="field-odd">Parameters</dt>
     
    327327
    328328<dl class="function">
    329 <dt id="install.mk_convert_build">
    330 <code class="sig-prename descclassname">install.</code><code class="sig-name descname">mk_convert_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em>, <em class="sig-param">makefile</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_convert_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_convert_build" title="Permalink to this definition">¶</a></dt>
    331 <dd><p>Compiles the Fortran code and generates the executable.</p>
    332 <dl class="field-list simple">
    333 <dt class="field-odd">Parameters</dt>
    334 <dd class="field-odd"><ul class="simple">
    335 <li><p><strong>src_path</strong> (<em>str</em>) – Path to the fortran source directory.</p></li>
    336 <li><p><strong>makefile</strong> (<em>str</em>) – The name of the makefile which should be used.</p></li>
    337 </ul>
    338 </dd>
    339 </dl>
    340 </dd></dl>
    341 
    342 <dl class="function">
    343329<dt id="install.mk_env_vars">
    344330<code class="sig-prename descclassname">install.</code><code class="sig-name descname">mk_env_vars</code><span class="sig-paren">(</span><em class="sig-param">ecuid</em>, <em class="sig-param">ecgid</em>, <em class="sig-param">gateway</em>, <em class="sig-param">destination</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_env_vars"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_env_vars" title="Permalink to this definition">¶</a></dt>
     
    354340<li><p><strong>destination</strong> (<em>str</em>) – The remote destination which is used to transfer files
    355341from ECMWF server to local gateway server.</p></li>
     342</ul>
     343</dd>
     344</dl>
     345</dd></dl>
     346
     347<dl class="function">
     348<dt id="install.mk_fortran_build">
     349<code class="sig-prename descclassname">install.</code><code class="sig-name descname">mk_fortran_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em>, <em class="sig-param">makefile</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_fortran_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_fortran_build" title="Permalink to this definition">¶</a></dt>
     350<dd><p>Compiles the Fortran code and generates the executable.</p>
     351<dl class="field-list simple">
     352<dt class="field-odd">Parameters</dt>
     353<dd class="field-odd"><ul class="simple">
     354<li><p><strong>src_path</strong> (<em>str</em>) – Path to the fortran source directory.</p></li>
     355<li><p><strong>makefile</strong> (<em>str</em>) – The name of the makefile which should be used.</p></li>
    356356</ul>
    357357</dd>
     
    449449<dt class="field-odd">Parameters</dt>
    450450<dd class="field-odd"><ul class="simple">
     451<li><p><strong>jtemplate</strong> (<em>str</em>) – Job template file from sub-directory “Templates” for
     452submission to ECMWF. It contains all necessary
     453module and variable settings for the ECMWF environment as well as
     454the job call and mail report instructions.
     455Default is _config.TEMPFILE_JOB.</p></li>
     456<li><p><strong>job_file</strong> (<em>str</em>) – Path to the job script file.</p></li>
     457<li><p><strong>clist</strong> (<em>list of str</em>) – Contains all necessary parameters for ECMWF CONTROL file.</p></li>
     458</ul>
     459</dd>
     460</dl>
     461</dd></dl>
     462
     463<dl class="function">
     464<dt id="submit.submit">
     465<code class="sig-prename descclassname">submit.</code><code class="sig-name descname">submit</code><span class="sig-paren">(</span><em class="sig-param">jtemplate</em>, <em class="sig-param">c</em>, <em class="sig-param">queue</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/submit.html#submit"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#submit.submit" title="Permalink to this definition">¶</a></dt>
     466<dd><p>Prepares the job script and submits it to the specified queue.</p>
     467<dl class="field-list simple">
     468<dt class="field-odd">Parameters</dt>
     469<dd class="field-odd"><ul class="simple">
    451470<li><p><strong>jtemplate</strong> (<em>str</em>) – Job template file from sub-directory “_templates” for
    452471submission to ECMWF. It contains all necessary
    453472module and variable settings for the ECMWF environment as well as
    454473the job call and mail report instructions.
    455 Default is “job.temp”.</p></li>
    456 <li><p><strong>job_file</strong> (<em>str</em>) – Path to the job script file.</p></li>
    457 <li><p><strong>clist</strong> (<em>list of str</em>) – Contains all necessary parameters for ECMWF CONTROL file.</p></li>
    458 </ul>
    459 </dd>
    460 </dl>
    461 </dd></dl>
    462 
    463 <dl class="function">
    464 <dt id="submit.submit">
    465 <code class="sig-prename descclassname">submit.</code><code class="sig-name descname">submit</code><span class="sig-paren">(</span><em class="sig-param">jtemplate</em>, <em class="sig-param">c</em>, <em class="sig-param">queue</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/submit.html#submit"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#submit.submit" title="Permalink to this definition">¶</a></dt>
    466 <dd><p>Prepares the job script and submits it to the specified queue.</p>
    467 <dl class="field-list simple">
    468 <dt class="field-odd">Parameters</dt>
    469 <dd class="field-odd"><ul class="simple">
    470 <li><p><strong>jtemplate</strong> (<em>str</em>) – Job template file from sub-directory “_templates” for
    471 submission to ECMWF. It contains all necessary
    472 module and variable settings for the ECMWF environment as well as
    473 the job call and mail report instructions.
    474 Default is “job.temp”.</p></li>
     474Default is _config.TEMPFILE_JOB.</p></li>
    475475<li><p><strong>c</strong> (<a class="reference internal" href="#ControlFile.ControlFile" title="ControlFile.ControlFile"><em>ControlFile</em></a>) – Contains all the parameters of CONTROL file and
    476476command line.</p></li>
     
    11121112<code class="sig-name descname">makefile</code><a class="headerlink" href="#ControlFile.ControlFile.makefile" title="Permalink to this definition">¶</a></dt>
    11131113<dd><p>Name of the makefile to be used for the Fortran program.
    1114 Default value is ‘Makefile.gfortran’.</p>
     1114Default value is None.</p>
    11151115<dl class="field-list simple">
    11161116<dt class="field-odd">Type</dt>
     
    19091909<dl class="method">
    19101910<dt id="GribUtil.GribUtil.set_keys">
    1911 <code class="sig-name descname">set_keys</code><span class="sig-paren">(</span><em class="sig-param">fromfile</em>, <em class="sig-param">keynames</em>, <em class="sig-param">keyvalues</em>, <em class="sig-param">wherekeynames</em>, <em class="sig-param">wherekeyvalues</em>, <em class="sig-param">filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
     1911<code class="sig-name descname">set_keys</code><span class="sig-paren">(</span><em class="sig-param">fromfile</em>, <em class="sig-param">filemode='wb'</em>, <em class="sig-param">keynames=[]</em>, <em class="sig-param">keyvalues=[]</em>, <em class="sig-param">wherekeynames=[]</em>, <em class="sig-param">wherekeyvalues=[]</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
    19121912<dd><p>Opens the file to read the grib messages and then write
    19131913the selected messages (with wherekeys) to a new output file.
     
    33133313<dl class="function">
    33143314<dt id="checks.check_public">
    3315 <code class="sig-prename descclassname">checks.</code><code class="sig-name descname">check_public</code><span class="sig-paren">(</span><em class="sig-param">public</em>, <em class="sig-param">dataset</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_public"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_public" title="Permalink to this definition">¶</a></dt>
     3315<code class="sig-prename descclassname">checks.</code><code class="sig-name descname">check_public</code><span class="sig-paren">(</span><em class="sig-param">public</em>, <em class="sig-param">dataset</em>, <em class="sig-param">marsclass</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_public"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_public" title="Permalink to this definition">¶</a></dt>
    33163316<dd><p>Check wether the dataset parameter is set to a
    33173317public data set.</p>
  • Documentation/html/Documentation/Input/run.html

    r6931f61 r08c9091  
    381381<span class="c1">#</span>
    382382<span class="c1"># @Licence:</span>
    383 <span class="c1">#    (C) Copyright 2014-2019.</span>
     383<span class="c1">#    (C) Copyright 2014-2020.</span>
    384384<span class="c1">#</span>
    385385<span class="c1">#    SPDX-License-Identifier: CC-BY-4.0</span>
     
    407407<span class="nv">OUTPUTDIR</span><span class="o">=</span>None
    408408<span class="nv">PP_ID</span><span class="o">=</span>None
    409 <span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">&#39;job.temp&#39;</span>
     409<span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">&#39;submitscript.template&#39;</span>
    410410<span class="nv">CONTROLFILE</span><span class="o">=</span><span class="s1">&#39;CONTROL_EA5&#39;</span>
    411411<span class="nv">DEBUG</span><span class="o">=</span><span class="m">0</span>
     
    424424<span class="c1"># INITIALIZE EMPTY PARAMETERLIST</span>
    425425<span class="nv">parameterlist</span><span class="o">=</span><span class="s2">&quot;&quot;</span>
     426
     427<span class="c1"># CHECK IF ON ECMWF SERVER; </span>
     428<span class="k">if</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">&quot;ecgb&quot;</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">&quot;cca&quot;</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">&quot;ccb&quot;</span>* <span class="o">]]</span><span class="p">;</span> <span class="k">then</span>
     429<span class="c1"># LOAD PYTHON3 MODULE</span>
     430  module load python3
     431<span class="k">fi</span>
    426432
    427433<span class="c1"># CHECK FOR MORE PARAMETER </span>
  • Documentation/html/Documentation/Input/setup.html

    r6931f61 r08c9091  
    307307<span class="c1">#</span>
    308308<span class="c1"># @Licence:</span>
    309 <span class="c1">#    (C) Copyright 2014-2019.</span>
     309<span class="c1">#    (C) Copyright 2014-2020.</span>
    310310<span class="c1">#</span>
    311311<span class="c1">#    SPDX-License-Identifier: CC-BY-4.0</span>
     
    342342<span class="nv">parameterlist</span><span class="o">=</span><span class="s2">&quot;&quot;</span>
    343343
     344<span class="c1"># CHECK IF ON ECMWF SERVER; </span>
     345<span class="k">if</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">&quot;ecgb&quot;</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">&quot;cca&quot;</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">&quot;ccb&quot;</span>* <span class="o">]]</span><span class="p">;</span> <span class="k">then</span>
     346<span class="c1"># LOAD PYTHON3 MODULE</span>
     347  module load python3
     348<span class="k">fi</span>
     349
    344350<span class="c1"># DEFAULT PARAMETERLIST</span>
    345351<span class="k">if</span> <span class="o">[</span> -n <span class="s2">&quot;</span><span class="nv">$TARGET</span><span class="s2">&quot;</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
     
    352358
    353359<span class="c1"># CHECK FOR MORE PARAMETER </span>
    354 <span class="k">if</span> <span class="o">[</span> <span class="s2">&quot;</span><span class="nv">$TARGET</span><span class="s2">&quot;</span> <span class="o">==</span> <span class="s2">&quot;ecgate&quot;</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">&quot;</span><span class="nv">$TARGET</span><span class="s2">&quot;</span> <span class="o">==</span> <span class="s2">&quot;cca&quot;</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
     360<span class="k">if</span> <span class="o">[</span> <span class="s2">&quot;</span><span class="nv">$TARGET</span><span class="s2">&quot;</span> <span class="o">==</span> <span class="s2">&quot;ecgate&quot;</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">&quot;</span><span class="nv">$TARGET</span><span class="s2">&quot;</span> <span class="o">==</span> <span class="s2">&quot;cca&quot;</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">&quot;</span><span class="nv">$TARGET</span><span class="s2">&quot;</span> <span class="o">==</span> <span class="s2">&quot;ccb&quot;</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
    355361  <span class="c1"># check if necessary Parameters are set</span>
    356362  <span class="k">if</span> <span class="o">[</span> -z <span class="s2">&quot;</span><span class="nv">$ECUID</span><span class="s2">&quot;</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> -z <span class="s2">&quot;</span><span class="nv">$ECGID</span><span class="s2">&quot;</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">&quot;</span><span class="nv">$ECUID</span><span class="s2">&quot;</span> <span class="o">==</span> <span class="s2">&quot;&lt;username&gt;&quot;</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">&quot;</span><span class="nv">$ECGID</span><span class="s2">&quot;</span> <span class="o">==</span> <span class="s2">&quot;&lt;groupID&gt;&quot;</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
  • Documentation/html/Documentation/Input/templates.html

    r6931f61 r08c9091  
    365365<span class="k">case</span> <span class="nv">$$</span><span class="o">{</span>HOST<span class="o">}</span> in
    366366  *ecg*<span class="o">)</span>
    367           module unload grib_api
    368           module unload emos
    369           module load python3
    370           module load eccodes
    371           module load emos/455-r64
    372           <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
    373           <span class="p">;;</span>
    374           *cca*<span class="o">)</span>
    375           module switch PrgEnv-cray PrgEnv-intel
    376           module load python3
    377           module load eccodes
    378           module load emos/455-r64
    379           <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="si">${</span><span class="nv">TMPDIR</span><span class="si">}</span>
    380           <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
     367  module unload grib_api
     368  module unload emos
     369  module load python3
     370  module load eccodes
     371  module load emos/455-r64
     372  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
     373  <span class="p">;;</span>
     374  *cca*<span class="o">)</span>
     375  module switch PrgEnv-cray PrgEnv-intel
     376  module load python3
     377  module load eccodes
     378  module load emos/455-r64
     379  <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="si">${</span><span class="nv">TMPDIR</span><span class="si">}</span>
     380  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
    381381  <span class="p">;;</span>
    382382<span class="k">esac</span>
     
    449449<span class="k">case</span> <span class="nv">$$$$</span><span class="o">{</span>HOST<span class="o">}</span> in
    450450  *ecg*<span class="o">)</span>
    451           module unload grib_api
    452           module unload emos
    453           module load python3
    454           module load eccodes
    455           module load emos/455-r64
     451  module unload grib_api
     452  module unload emos
     453  module load python3
     454  module load eccodes
     455  module load emos/455-r64
    456456  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$fp_root_path</span>
    457457  <span class="p">;;</span>
    458458  *cca*<span class="o">)</span>
    459           module switch PrgEnv-cray PrgEnv-intel
    460           module load python3
    461           module load eccodes
    462           module load emos/455-r64
     459  module switch PrgEnv-cray PrgEnv-intel
     460  module load python3
     461  module load eccodes
     462  module load emos/455-r64
    463463  <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>TMPDIR<span class="o">}</span>
    464464  <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$fp_root_path</span>
  • Documentation/html/Installation/gateway.html

    r6931f61 r08c9091  
    296296</div>
    297297<p><code class="docutils literal notranslate"><span class="pre">Flex_extract</span></code> automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a “SUCCESS” statement in the last line:</p>
    298 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./rwgrib2.f90
    299 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./phgrreal.f90
    300 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./grphreal.f90
    301 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./ftrafo.f90
    302 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./calc_etadot.f90
    303 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./posnam.f90
     298<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./rwgrib2.f90
     299gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./phgrreal.f90
     300gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./grphreal.f90
     301gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./ftrafo.f90
     302gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./calc_etadot.f90
     303gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./posnam.f90
    304304gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
    305305ln -sf calc_etadot_fast.out calc_etadot
  • Documentation/html/Installation/local.html

    r6931f61 r73308e0  
    428428<p>to start the installation. You should see the following standard output.</p>
    429429<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Output of setup.sh</span>
    430     WARNING: installdir has not been specified
    431     flex_extract will be installed in here by compiling the Fortran <span class="nb">source</span> in &lt;path-to-flex_extract&gt;/flex_extract_v7.1/Source/Fortran
    432     Install flex_extract_v7.1 software at <span class="nb">local</span> in directory &lt;path-to-flex_extract&gt;/flex_extract_v7.1
    433 
    434     Using makefile: makefile_local_gfortran
    435     gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./rwgrib2.f90
    436     gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./phgrreal.f90
    437     gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./grphreal.f90
    438     gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./ftrafo.f90
    439     gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./calc_etadot.f90
    440     gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./posnam.f90
    441     gfortran  rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
    442     ln -sf calc_etadot_fast.out calc_etadot
    443 
    444     lrwxrwxrwx. <span class="m">1</span> &lt;username&gt; tmc <span class="m">20</span> <span class="m">15</span>. Mär <span class="m">13</span>:31 ./calc_etadot -&gt; calc_etadot_fast.out
     430WARNING: installdir has not been specified
     431flex_extract will be installed in here by compiling the Fortran <span class="nb">source</span> in &lt;path-to-flex_extract&gt;/flex_extract_v7.1/Source/Fortran
     432Install flex_extract_v7.1 software at <span class="nb">local</span> in directory &lt;path-to-flex_extract&gt;/flex_extract_v7.1
     433
     434Using makefile: makefile_local_gfortran
     435gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./rwgrib2.f90
     436gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./phgrreal.f90
     437gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./grphreal.f90
     438gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./ftrafo.f90
     439gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./calc_etadot.f90
     440gfortran   -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c ./posnam.f90
     441gfortran  rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
     442ln -sf calc_etadot_fast.out calc_etadot
     443
     444lrwxrwxrwx. <span class="m">1</span> &lt;username&gt; tmc <span class="m">20</span> Aug <span class="m">12</span>  <span class="m">10</span>:59 ./calc_etadot -&gt; calc_etadot_fast.out
    445445</pre></div>
    446446</div>
  • Documentation/html/Installation/remote.html

    r6931f61 r08c9091  
    333333</div>
    334334<p><code class="docutils literal notranslate"><span class="pre">Flex_extract</span></code> automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a “SUCCESS” statement in the last line:</p>
    335 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./rwgrib2.f90
    336 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./phgrreal.f90
    337 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./grphreal.f90
    338 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./ftrafo.f90
    339 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./calc_etadot.f90
    340 gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c     ./posnam.f90
     335<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./rwgrib2.f90
     336gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./phgrreal.f90
     337gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./grphreal.f90
     338gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./ftrafo.f90
     339gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./calc_etadot.f90
     340gfortran    -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian   -c    ./posnam.f90
    341341gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
    342342ln -sf calc_etadot_fast.out calc_etadot
  • Documentation/html/Support/known_bugs_issues.html

    r6931f61 r08c9091  
    191191... ERROR CODE: <span class="m">250</span>
    192192... ERROR MESSAGE:
    193          Command <span class="s1">&#39;[&#39;</span>&lt;path-to-flex_extract&gt;/flex_extract_v7.1/Source/Fortran/calc_etadot<span class="s1">&#39;]&#39;</span> returned non-zero <span class="nb">exit</span> status <span class="m">250</span>.
     193      Command <span class="s1">&#39;[&#39;</span>&lt;path-to-flex_extract&gt;/flex_extract_v7.1/Source/Fortran/calc_etadot<span class="s1">&#39;]&#39;</span> returned non-zero <span class="nb">exit</span> status <span class="m">250</span>.
    194194... FORTRAN PROGRAM FAILED!
    195195</pre></div>
  • Documentation/html/_modules/ControlFile.html

    r6931f61 r08c9091  
    181181<span class="c1">#        - divided assignment of attributes and the check of conditions</span>
    182182<span class="c1">#        - outsourced the commandline argument assignments to control attributes</span>
     183<span class="c1">#   June 2020 - Anne Philipp</span>
     184<span class="c1">#        - update default makefile to None</span>
    183185<span class="c1">#</span>
    184186<span class="c1"># @License:</span>
    185 <span class="c1">#    (C) Copyright 2014-2019.</span>
     187<span class="c1">#    (C) Copyright 2014-2020.</span>
    186188<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    187189<span class="c1">#</span>
     
    429431<span class="sd">    makefile : str</span>
    430432<span class="sd">        Name of the makefile to be used for the Fortran program.</span>
    431 <span class="sd">        Default value is &#39;Makefile.gfortran&#39;.</span>
     433<span class="sd">        Default value is None.</span>
    432434
    433435<span class="sd">    destination : str</span>
     
    564566        <span class="bp">self</span><span class="o">.</span><span class="n">exedir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span>
    565567        <span class="bp">self</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="kc">None</span>
    566         <span class="bp">self</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">&#39;Makefile.gfortran&#39;</span>
     568        <span class="bp">self</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="kc">None</span>
    567569        <span class="bp">self</span><span class="o">.</span><span class="n">destination</span> <span class="o">=</span> <span class="kc">None</span>
    568570        <span class="bp">self</span><span class="o">.</span><span class="n">gateway</span> <span class="o">=</span> <span class="kc">None</span>
     
    776778                      <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="n">_config</span><span class="o">.</span><span class="n">FILE_MARS_REQUESTS</span><span class="p">))</span>
    777779
    778         <span class="n">check_public</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">public</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dataset</span><span class="p">)</span>
     780        <span class="n">check_public</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">public</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dataset</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">marsclass</span><span class="p">)</span>
    779781
    780782        <span class="bp">self</span><span class="o">.</span><span class="n">type</span> <span class="o">=</span> <span class="n">check_type</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">type</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">)</span>
  • Documentation/html/_modules/EcFlexpart.html

    r6931f61 r08c9091  
    201201<span class="c1">#</span>
    202202<span class="c1"># @License:</span>
    203 <span class="c1">#    (C) Copyright 2014-2019.</span>
     203<span class="c1">#    (C) Copyright 2014-2020.</span>
    204204<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    205205<span class="c1">#</span>
     
    15781578                                        <span class="s1">&#39;stepRange&#39;</span><span class="p">,</span> <span class="s1">&#39;values&#39;</span><span class="p">],</span>
    15791579                              <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)),</span>
    1580                                          <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]],</span>
     1580                                         <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]]</span>
    15811581                             <span class="p">)</span>
    15821582            <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">,</span>
     
    16411641
    16421642        <span class="n">gribfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">inputdir</span><span class="p">,</span> <span class="s1">&#39;rr_grib_dummy.grb&#39;</span><span class="p">))</span>
    1643 
    1644         <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span>
    1645                                 <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">)</span>
    1646 
    1647         <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span>
    1648                                 <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;ab&#39;</span><span class="p">)</span>
     1643       
     1644        <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;paramId&#39;</span><span class="p">,</span><span class="s1">&#39;paramId&#39;</span><span class="p">],</span>
     1645                                <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">,</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">)</span>       
    16491646
    16501647        <span class="k">return</span>
     
    18841881<span class="c1"># ============================================================================================</span>
    18851882            <span class="c1"># create name of final output file, e.g. EN13040500 (ENYYMMDDHH)</span>
     1883            <span class="c1"># for CERA-20C we need all 4 digits for the year sinc 1900 - 2010</span>
    18861884            <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">purefc</span><span class="p">:</span>
    1887                 <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">8</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="n">ctime</span> <span class="o">+</span> <span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="n">cstep</span>
     1885                <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">marsclass</span> <span class="o">==</span> <span class="s1">&#39;EP&#39;</span><span class="p">:</span>
     1886                    <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">8</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="n">ctime</span> <span class="o">+</span> <span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="n">cstep</span>
     1887                <span class="k">else</span><span class="p">:</span>
     1888                    <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">8</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="n">ctime</span> <span class="o">+</span> <span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="n">cstep</span>
    18881889            <span class="k">else</span><span class="p">:</span>
    1889                 <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate_hour</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">10</span><span class="p">]</span>
     1890                <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">marsclass</span> <span class="o">==</span> <span class="s1">&#39;EP&#39;</span><span class="p">:</span>
     1891                    <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate_hour</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">10</span><span class="p">]</span>
     1892                <span class="k">else</span><span class="p">:</span>
     1893                    <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate_hour</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">10</span><span class="p">]</span>
    18901894
    18911895            <span class="c1"># if necessary, add ensemble member number to filename suffix</span>
     
    19101914                                                <span class="n">c</span><span class="o">.</span><span class="n">ppid</span> <span class="o">+</span>
    19111915                                                <span class="s1">&#39;*&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
    1912             <span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">&#39;flux&#39;</span> <span class="o">+</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">suffix</span>
     1916            <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">marsclass</span> <span class="o">==</span> <span class="s1">&#39;EP&#39;</span><span class="p">:</span>
     1917                <span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">&#39;flux&#39;</span> <span class="o">+</span> <span class="n">suffix</span>
     1918            <span class="k">else</span><span class="p">:</span>
     1919                <span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">&#39;flux&#39;</span> <span class="o">+</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">suffix</span>
    19131920            <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">cwc</span><span class="p">:</span>
    19141921                <span class="n">flist</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;fort.15&#39;</span><span class="p">,</span> <span class="n">fluxfile</span><span class="p">,</span> <span class="s1">&#39;fort.16&#39;</span><span class="p">,</span> <span class="n">orolsm</span><span class="p">]</span>
  • Documentation/html/_modules/GribUtil.html

    r6931f61 r08c9091  
    175175<span class="c1">#</span>
    176176<span class="c1"># @License:</span>
    177 <span class="c1">#    (C) Copyright 2014-2019.</span>
     177<span class="c1">#    (C) Copyright 2014-2020.</span>
    178178<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    179179<span class="c1">#</span>
     
    284284
    285285
    286 <div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a>    <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="p">,</span>
    287                  <span class="n">wherekeyvalues</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">):</span>
     286<div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a>    <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">&#39;wb&#39;</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">keyvalues</span><span class="o">=</span><span class="p">[],</span>
     287                 <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[]):</span>
    288288        <span class="sd">&#39;&#39;&#39;Opens the file to read the grib messages and then write</span>
    289289<span class="sd">        the selected messages (with wherekeys) to a new output file.</span>
     
    324324
    325325        <span class="n">fout</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filenames</span><span class="p">,</span> <span class="n">filemode</span><span class="p">)</span>
    326 
    327         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fromfile</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
     326       <span class="c1"># print(fout)</span>
     327        <span class="n">fin</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fromfile</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span>
     328       <span class="c1"># print(fin)</span>
     329        <span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
    328330            <span class="n">gid</span> <span class="o">=</span> <span class="n">codes_grib_new_from_file</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
    329 
     331           <span class="c1"># print(&#39;test&#39;)</span>
     332            <span class="k">if</span> <span class="n">gid</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
     333                <span class="k">break</span>           
     334           
    330335            <span class="n">select</span> <span class="o">=</span> <span class="kc">True</span>
    331             <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
    332             <span class="k">for</span> <span class="n">wherekey</span> <span class="ow">in</span> <span class="n">wherekeynames</span><span class="p">:</span>
     336            <span class="c1">#print(str(codes_get(gid,&#39;paramId&#39;)))</span>
     337            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">wherekey</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">wherekeynames</span><span class="p">):</span>
    333338                <span class="k">if</span> <span class="ow">not</span> <span class="n">codes_is_defined</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">wherekey</span><span class="p">):</span>
    334339                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;wherekey was not defined&quot;</span><span class="p">)</span>
     
    336341                <span class="n">select</span> <span class="o">=</span> <span class="p">(</span><span class="n">select</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">wherekeyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">==</span>
    337342                                      <span class="nb">str</span><span class="p">(</span><span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">wherekey</span><span class="p">))))</span>
    338                 <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
    339343
    340344            <span class="k">if</span> <span class="n">select</span><span class="p">:</span>
    341                 <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
    342                 <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keynames</span><span class="p">:</span>
     345                <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">keynames</span><span class="p">):</span>
    343346                    <span class="k">if</span> <span class="n">key</span> <span class="o">==</span> <span class="s1">&#39;values&#39;</span><span class="p">:</span>
    344347                        <span class="n">codes_set_values</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
    345348                    <span class="k">else</span><span class="p">:</span>
    346349                        <span class="n">codes_set</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
    347                     <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
    348350
    349351                <span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fout</span><span class="p">)</span>
     
    352354
    353355        <span class="n">fout</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
     356        <span class="n">fin</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
    354357
    355358        <span class="k">return</span></div>
     
    391394            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Give a value for each keyname!&quot;</span><span class="p">)</span>
    392395
    393 
    394396        <span class="n">fout</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filenames</span><span class="p">,</span> <span class="n">filemode</span><span class="p">)</span>
    395 
     397        <span class="n">fin</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename_in</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span>
     398       
    396399        <span class="n">fields</span> <span class="o">=</span> <span class="mi">0</span>
    397 
    398         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename_in</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
    399             <span class="k">if</span> <span class="n">fields</span> <span class="o">&gt;=</span> <span class="mi">1</span><span class="p">:</span>
     400        <span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
     401            <span class="k">if</span> <span class="n">fields</span> <span class="o">&gt;=</span> <span class="nb">len</span><span class="p">(</span><span class="n">keyvalues</span><span class="p">):</span>
    400402                <span class="n">fout</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
     403                <span class="n">fin</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
    401404                <span class="k">return</span>
    402 
     405               
    403406            <span class="n">gid</span> <span class="o">=</span> <span class="n">codes_grib_new_from_file</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
    404 
    405             <span class="n">select</span> <span class="o">=</span> <span class="kc">True</span>
    406             <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
    407             <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keynames</span><span class="p">:</span>
     407            <span class="k">if</span> <span class="n">gid</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
     408                <span class="k">break</span>           
     409
     410            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">keynames</span><span class="p">):</span>
     411               
     412                <span class="n">select</span> <span class="o">=</span> <span class="kc">True</span>
     413               
    408414                <span class="k">if</span> <span class="ow">not</span> <span class="n">codes_is_defined</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
    409415                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Key was not defined&quot;</span><span class="p">)</span>
     
    415421                    <span class="n">select</span> <span class="o">=</span> <span class="p">(</span><span class="n">select</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">!=</span>
    416422                                          <span class="nb">str</span><span class="p">(</span><span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">))))</span>
    417                 <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
    418 
    419             <span class="k">if</span> <span class="n">select</span><span class="p">:</span>
    420                 <span class="n">fields</span> <span class="o">=</span> <span class="n">fields</span> <span class="o">+</span> <span class="mi">1</span>
    421                 <span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fout</span><span class="p">)</span>
    422 
     423               
     424                <span class="k">if</span> <span class="n">select</span><span class="p">:</span>
     425                    <span class="n">fields</span> <span class="o">=</span> <span class="n">fields</span> <span class="o">+</span> <span class="mi">1</span>
     426                    <span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fout</span><span class="p">)</span>
     427                   
    423428            <span class="n">codes_release</span><span class="p">(</span><span class="n">gid</span><span class="p">)</span>
    424429
    425430        <span class="n">fout</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
     431        <span class="n">fin</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
    426432
    427433        <span class="k">return</span></div>
  • Documentation/html/_modules/MarsRetrieval.html

    r6931f61 r08c9091  
    182182<span class="c1">#</span>
    183183<span class="c1"># @License:</span>
    184 <span class="c1">#    (C) Copyright 2014-2019.</span>
     184<span class="c1">#    (C) Copyright 2014-2020.</span>
    185185<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    186186<span class="c1">#</span>
     
    608608
    609609        <span class="k">return</span></div>
     610   
     611    <span class="k">def</span> <span class="nf">_convert_to_cdsera5_sfc_request</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">attrs</span><span class="p">):</span>
     612        <span class="sd">&#39;&#39;&#39;</span>
     613<span class="sd">        The keywords and values for the single level download</span>
     614<span class="sd">        with CDS API is different from MARS. This function </span>
     615<span class="sd">        converts the old request keywords to the new ones.</span>
     616<span class="sd">        </span>
     617<span class="sd">        Example request for single level downloads in CDS API</span>
     618<span class="sd">        </span>
     619<span class="sd">        retrieve(</span>
     620<span class="sd">            &#39;reanalysis-era5-single-levels&#39;,</span>
     621<span class="sd">            {</span>
     622<span class="sd">                &#39;product_type&#39;: &#39;reanalysis&#39;,</span>
     623<span class="sd">                &#39;variable&#39;: &#39;total_precipitation&#39;,</span>
     624<span class="sd">                &#39;year&#39;: &#39;2019&#39;,</span>
     625<span class="sd">                &#39;month&#39;: &#39;01&#39;,</span>
     626<span class="sd">                &#39;day&#39;: &#39;01&#39;,</span>
     627<span class="sd">                &#39;time&#39;: &#39;00:00&#39;,</span>
     628<span class="sd">                &#39;format&#39;: &#39;grib&#39;,</span>
     629<span class="sd">                &#39;grid&#39;:[1.0, 1.0],</span>
     630<span class="sd">                &#39;area&#39;: [</span>
     631<span class="sd">                    45, 0, 43,</span>
     632<span class="sd">                    12,</span>
     633<span class="sd">                ],</span>
     634<span class="sd">            },</span>
     635<span class="sd">            &#39;download.grib&#39;)</span>
     636<span class="sd">            </span>
     637<span class="sd">        Parameters</span>
     638<span class="sd">        ----------</span>
     639<span class="sd">        attrs : dict</span>
     640<span class="sd">            Dictionary of the mars request parameters.</span>
     641
     642<span class="sd">        Return</span>
     643<span class="sd">        ------</span>
     644
     645<span class="sd">        &#39;&#39;&#39;</span>
     646        <span class="kn">from</span> <span class="nn">datetime</span> <span class="kn">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
     647        <span class="n">newattrs</span> <span class="o">=</span> <span class="p">{}</span>
     648
     649        <span class="k">if</span> <span class="s1">&#39;/&#39;</span> <span class="ow">in</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]:</span>
     650            <span class="n">year</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
     651            <span class="n">month</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
     652            <span class="n">day</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
     653            <span class="n">start</span><span class="p">,</span><span class="n">end</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[::</span><span class="mi">2</span><span class="p">]</span>
     654            <span class="n">sdate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)</span>
     655            <span class="n">edate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">end</span><span class="p">,</span> <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)</span>
     656            <span class="n">date</span> <span class="o">=</span> <span class="n">sdate</span>
     657            <span class="k">while</span> <span class="n">date</span> <span class="o">&lt;=</span> <span class="n">edate</span><span class="p">:</span>
     658                <span class="n">year</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">year</span><span class="p">)</span>
     659                <span class="n">month</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">month</span><span class="p">)</span>
     660                <span class="n">day</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">day</span><span class="p">)</span>     
     661                <span class="n">date</span> <span class="o">=</span> <span class="n">date</span> <span class="o">+</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">days</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
     662            <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;year&#39;</span><span class="p">]</span> <span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">year</span><span class="p">)</span>
     663            <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;month&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">month</span><span class="p">)</span>
     664            <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;day&#39;</span><span class="p">]</span> <span class="o">=</span>  <span class="nb">list</span><span class="p">(</span><span class="n">day</span><span class="p">)</span>                       
     665        <span class="k">else</span><span class="p">:</span>
     666            <span class="n">date</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">],</span> <span class="s1">&#39;%Y%m</span><span class="si">%d</span><span class="s1">&#39;</span><span class="p">)</span>
     667            <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;year&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">date</span><span class="o">.</span><span class="n">year</span>
     668            <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;month&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">date</span><span class="o">.</span><span class="n">month</span>
     669            <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;day&#39;</span><span class="p">]</span> <span class="o">=</span>  <span class="n">date</span><span class="o">.</span><span class="n">day</span>                 
     670       
     671        <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;product_type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;reanalysis&#39;</span>
     672        <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;area&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;area&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>
     673        <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;grid&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;grid&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)))</span>
     674        <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;param&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;param&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>       
     675        <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span><span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span><span class="mi">24</span><span class="p">,</span><span class="mi">3</span><span class="p">)))</span>
     676        <span class="n">newattrs</span><span class="p">[</span><span class="s1">&#39;format&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;grib&#39;</span>
     677               
     678        <span class="k">return</span> <span class="n">newattrs</span>
    610679
    611680<div class="viewcode-block" id="MarsRetrieval.data_retrieve"><a class="viewcode-back" href="../Documentation/Api/api_python.html#MarsRetrieval.MarsRetrieval.data_retrieve">[docs]</a>    <span class="k">def</span> <span class="nf">data_retrieve</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
     
    641710            <span class="k">del</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;target&#39;</span><span class="p">]</span>
    642711        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;target: &#39;</span> <span class="o">+</span> <span class="n">target</span><span class="p">)</span>
    643 
     712       
    644713        <span class="c1"># find all keys without a value and convert all other values to strings</span>
    645714        <span class="n">empty_keys</span> <span class="o">=</span> <span class="p">[]</span>
     
    660729            <span class="k">try</span><span class="p">:</span>
    661730                <span class="k">if</span> <span class="n">cds_api</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="p">,</span> <span class="n">cdsapi</span><span class="o">.</span><span class="n">Client</span><span class="p">):</span>
     731                    <span class="c1"># distinguish between model (ECMWF MARS access) </span>
     732                    <span class="c1"># and surface level (CS3 online access)</span>
     733                    <span class="k">if</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;levtype&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;ml&#39;</span><span class="p">:</span>
     734                        <span class="n">dataset</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">CDS_DATASET_ML</span>
     735                    <span class="k">else</span><span class="p">:</span>
     736                        <span class="n">dataset</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">CDS_DATASET_SFC</span>
     737                        <span class="n">attrs</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_convert_to_cdsera5_sfc_request</span><span class="p">(</span><span class="n">attrs</span><span class="p">)</span>
    662738                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;RETRIEVE ERA5 WITH CDS API!&#39;</span><span class="p">)</span>
    663                     <span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="o">.</span><span class="n">retrieve</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">CDS_DATASET</span><span class="p">,</span>
     739                    <span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="o">.</span><span class="n">retrieve</span><span class="p">(</span><span class="n">dataset</span><span class="p">,</span>
    664740                                         <span class="n">attrs</span><span class="p">,</span> <span class="n">target</span><span class="p">)</span>
    665741                <span class="k">elif</span> <span class="n">ec_api</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="p">,</span> <span class="n">ecmwfapi</span><span class="o">.</span><span class="n">ECMWFDataServer</span><span class="p">):</span>
  • Documentation/html/_modules/UioFiles.html

    r6931f61 r08c9091  
    185185<span class="c1">#</span>
    186186<span class="c1"># @License:</span>
    187 <span class="c1">#    (C) Copyright 2014-2019.</span>
     187<span class="c1">#    (C) Copyright 2014-2020.</span>
    188188<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    189189<span class="c1">#</span>
  • Documentation/html/_modules/checks.html

    r6931f61 r08c9091  
    171171<span class="c1">#</span>
    172172<span class="c1"># @License:</span>
    173 <span class="c1">#    (C) Copyright 2014-2019.</span>
     173<span class="c1">#    (C) Copyright 2014-2020.</span>
    174174<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    175175<span class="c1">#</span>
     
    813813    <span class="k">return</span></div>
    814814
    815 <div class="viewcode-block" id="check_public"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_public">[docs]</a><span class="k">def</span> <span class="nf">check_public</span><span class="p">(</span><span class="n">public</span><span class="p">,</span> <span class="n">dataset</span><span class="p">):</span>
     815<div class="viewcode-block" id="check_public"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_public">[docs]</a><span class="k">def</span> <span class="nf">check_public</span><span class="p">(</span><span class="n">public</span><span class="p">,</span> <span class="n">dataset</span><span class="p">,</span> <span class="n">marsclass</span><span class="p">):</span>
    816816    <span class="sd">&#39;&#39;&#39;Check wether the dataset parameter is set to a</span>
    817817<span class="sd">    public data set.</span>
     
    829829
    830830<span class="sd">    &#39;&#39;&#39;</span>
    831     <span class="k">if</span> <span class="n">public</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">dataset</span><span class="p">:</span>
     831    <span class="k">if</span> <span class="n">public</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">dataset</span> <span class="ow">and</span> <span class="ow">not</span> <span class="p">(</span><span class="n">marsclass</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;EA&#39;</span><span class="p">):</span>
    832832        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;ERROR: If public MARS data are to be retrieved, &#39;</span>
    833833                         <span class="s1">&#39;the &quot;dataset&quot;-parameter has to be set, too!&#39;</span><span class="p">)</span>
  • Documentation/html/_modules/disaggregation.html

    r6931f61 r08c9091  
    181181<span class="c1">#        - added the new disaggregation method for precipitation</span>
    182182<span class="c1">#</span>
     183<span class="c1">#    June 2020 - Anne Philipp (University of Vienna):</span>
     184<span class="c1">#        - reformulated formular for dapoly</span>
     185<span class="c1">#</span>
    183186<span class="c1"># @License:</span>
    184 <span class="c1">#    (C) Copyright 2014-2019.</span>
     187<span class="c1">#    (C) Copyright 2014-2020.</span>
    185188<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    186189<span class="c1">#</span>
     
    254257
    255258<span class="sd">    &quot;&quot;&quot;</span>
    256 
    257     <span class="n">pya</span> <span class="o">=</span> <span class="p">(</span><span class="n">alist</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mf">3.</span> <span class="o">*</span> <span class="p">(</span><span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">2</span><span class="p">]))</span> <span class="o">/</span> <span class="mf">6.</span>
    258     <span class="n">pyb</span> <span class="o">=</span> <span class="p">(</span><span class="n">alist</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">/</span> <span class="mf">2.</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">9.</span> <span class="o">*</span> <span class="n">pya</span> <span class="o">/</span> <span class="mf">2.</span>
    259     <span class="n">pyc</span> <span class="o">=</span> <span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">7.</span> <span class="o">*</span> <span class="n">pya</span> <span class="o">/</span> <span class="mf">2.</span> <span class="o">-</span> <span class="mf">2.</span> <span class="o">*</span> <span class="n">pyb</span>
    260     <span class="n">pyd</span> <span class="o">=</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">pya</span> <span class="o">/</span> <span class="mf">4.</span> <span class="o">-</span> <span class="n">pyb</span> <span class="o">/</span> <span class="mf">3.</span> <span class="o">-</span> <span class="n">pyc</span> <span class="o">/</span> <span class="mf">2.</span>
    261     <span class="n">nfield</span> <span class="o">=</span> <span class="mf">8.</span> <span class="o">*</span> <span class="n">pya</span> <span class="o">+</span> <span class="mf">4.</span> <span class="o">*</span> <span class="n">pyb</span> <span class="o">+</span> <span class="mf">2.</span> <span class="o">*</span> <span class="n">pyc</span> <span class="o">+</span> <span class="n">pyd</span>
     259   
     260    <span class="n">nfield</span> <span class="o">=</span> <span class="o">-</span><span class="mf">1.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> \
     261              <span class="mf">7.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> \
     262              <span class="mf">7.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> \
     263              <span class="mf">1.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span>
    262264
    263265    <span class="k">return</span> <span class="n">nfield</span></div>
  • Documentation/html/_modules/get_mars_data.html

    r6931f61 r08c9091  
    188188<span class="c1">#</span>
    189189<span class="c1"># @License:</span>
    190 <span class="c1">#    (C) Copyright 2014-2019.</span>
     190<span class="c1">#    (C) Copyright 2014-2020.</span>
    191191<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    192192<span class="c1">#</span>
  • Documentation/html/_modules/install.html

    r6931f61 r08c9091  
    175175<span class="c1">#        - moved install_args_and_control in here</span>
    176176<span class="c1">#        - splitted code in smaller functions</span>
    177 <span class="c1">#        - delete convert build files in here instead of compile job script</span>
     177<span class="c1">#        - delete fortran build files in here instead of compile job script</span>
    178178<span class="c1">#        - changed static path names to variables from config file</span>
    179179<span class="c1">#        - splitted install function into several smaller pieces</span>
    180180<span class="c1">#        - use of tarfile package in python</span>
     181<span class="c1">#    June 2020 - Anne Philipp</span>
     182<span class="c1">#        - renamed &quot;convert&quot; functions to &quot;fortran&quot; functions</span>
     183<span class="c1">#        - reconfigured mk_tarball to select *.template files instead </span>
     184<span class="c1">#          of *.nl and *.temp</span>
     185<span class="c1">#        - added check for makefile settings</span>
    181186<span class="c1">#</span>
    182187<span class="c1"># @License:</span>
    183 <span class="c1">#    (C) Copyright 2014-2019.</span>
     188<span class="c1">#    (C) Copyright 2014-2020.</span>
    184189<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    185190<span class="c1">#</span>
     
    201206<span class="c1">#    mk_compilejob</span>
    202207<span class="c1">#    mk_job_template</span>
    203 <span class="c1">#    del_convert_build</span>
    204 <span class="c1">#    mk_convert_build</span>
     208<span class="c1">#    del_fortran_build</span>
     209<span class="c1">#    mk_fortran_build</span>
    205210<span class="c1">#</span>
    206211<span class="c1">#*******************************************************************************</span>
     
    405410                                  <span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">))</span>
    406411
    407     <span class="c1"># Create Fortran executable - CONVERT2</span>
     412    <span class="c1"># Create Fortran executable</span>
    408413    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Install &#39;</span> <span class="o">+</span>  <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">&#39; software at &#39;</span> <span class="o">+</span>
    409414          <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">+</span> <span class="s1">&#39; in directory &#39;</span> <span class="o">+</span>
    410415          <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
    411416
    412     <span class="n">del_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)</span>
    413     <span class="n">mk_convert_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span>
     417    <span class="n">del_fortran_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)</span>
     418    <span class="n">mk_fortran_build</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span>
    414419
    415420    <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">)</span>
     
    466471            <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span>
    467472
     473    <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">:</span>
     474        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: no makefile was specified.&#39;</span><span class="p">)</span>
     475        <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">&#39;local&#39;</span><span class="p">:</span>
     476            <span class="n">c</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">&#39;makefile_local_gfortran&#39;</span>
     477            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: default makefile selected: makefile_local_gfortan&#39;</span><span class="p">)</span>
     478        <span class="k">elif</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">&#39;ecgate&#39;</span><span class="p">:</span>
     479            <span class="n">c</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">&#39;makefile_ecgate&#39;</span>
     480            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: default makefile selected: makefile_ecgate&#39;</span><span class="p">)</span>
     481        <span class="k">elif</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">&#39;cca&#39;</span> <span class="ow">or</span> \
     482             <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">&#39;ccb&#39;</span><span class="p">:</span>
     483            <span class="n">c</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">&#39;makefile_cray&#39;</span>
     484            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;WARNING: default makefile selected: makefile_cray&#39;</span><span class="p">)</span>
     485        <span class="k">else</span><span class="p">:</span>
     486            <span class="k">pass</span>
     487       
    468488    <span class="k">return</span></div>
    469489
     
    518538                                      <span class="s1">&#39;CONTROL*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    519539    <span class="n">testfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    520                  <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span><span class="p">,</span> <span class="s1">&#39;*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     540                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span><span class="o">+</span><span class="s2">&quot;/Installation&quot;</span><span class="p">,</span> <span class="s1">&#39;*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    521541    <span class="n">tempfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    522                  <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">&#39;*.temp&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    523     <span class="n">nlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    524                <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">&#39;*.nl&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     542                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">&#39;*.template&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    525543    <span class="n">gribtable</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    526544                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">&#39;*grib*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
     
    531549    <span class="n">makefiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
    532550                 <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">&#39;makefile*&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    533     <span class="n">jobdir</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">]</span>
     551    <span class="n">jobdir</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
     552               <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">,</span> <span class="s1">&#39;*.md&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
    534553
    535554    <span class="c1"># concatenate single lists to one for a better looping</span>
    536     <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">nlfiles</span> <span class="o">+</span> \
     555    <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> \
    537556               <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ecmwf_env_file</span> <span class="o">+</span> \
    538557               <span class="n">runfile</span> <span class="o">+</span> <span class="n">jobdir</span> <span class="o">+</span> <span class="n">testfiles</span> <span class="o">+</span>\
     
    795814    <span class="k">return</span></div>
    796815
    797 <div class="viewcode-block" id="del_convert_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.del_convert_build">[docs]</a><span class="k">def</span> <span class="nf">del_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span>
     816<div class="viewcode-block" id="del_fortran_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.del_fortran_build">[docs]</a><span class="k">def</span> <span class="nf">del_fortran_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span>
    798817    <span class="sd">&#39;&#39;&#39;Clean up the Fortran source directory and remove all</span>
    799 <span class="sd">    build files (e.g. \*.o, \*.mod and CONVERT2)</span>
     818<span class="sd">    build files (e.g. \*.o, \*.mod and FORTRAN EXECUTABLE)</span>
    800819
    801820<span class="sd">    Parameters</span>
     
    819838    <span class="k">return</span></div>
    820839
    821 <div class="viewcode-block" id="mk_convert_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_convert_build">[docs]</a><span class="k">def</span> <span class="nf">mk_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span>
     840<div class="viewcode-block" id="mk_fortran_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_fortran_build">[docs]</a><span class="k">def</span> <span class="nf">mk_fortran_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span>
    822841    <span class="sd">&#39;&#39;&#39;Compiles the Fortran code and generates the executable.</span>
    823842
     
    849868            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Please edit &#39;</span> <span class="o">+</span> <span class="n">makefile</span> <span class="o">+</span>
    850869                  <span class="s1">&#39; or try another makefile in the src directory.&#39;</span><span class="p">)</span>
    851             <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Most likely GRIB_API_INCLUDE_DIR, GRIB_API_LIB &#39;</span>
     870            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Most likely ECCODES_INCLUDE_DIR, ECCODES_LIB &#39;</span>
    852871                  <span class="s1">&#39;and EMOSLIB must be adapted.&#39;</span><span class="p">)</span>
    853872            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Available makefiles:&#39;</span><span class="p">)</span>
     
    855874            <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">&#39;Compilation failed!&#39;</span><span class="p">)</span>
    856875    <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
    857         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: make of Fortran code failed:&#39;</span><span class="p">)</span>
     876        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: makefile call failed:&#39;</span><span class="p">)</span>
    858877        <span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
    859878    <span class="k">else</span><span class="p">:</span>
  • Documentation/html/_modules/prepare_flexpart.html

    r6931f61 r08c9091  
    191191<span class="c1">#</span>
    192192<span class="c1"># @License:</span>
    193 <span class="c1">#    (C) Copyright 2014-2019.</span>
     193<span class="c1">#    (C) Copyright 2014-2020.</span>
    194194<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    195195<span class="c1">#</span>
  • Documentation/html/_modules/submit.html

    r6931f61 r08c9091  
    183183<span class="c1">#        - splitted submit function to use genshi templates for the</span>
    184184<span class="c1">#          job script and avoid code duplication</span>
     185<span class="c1">#    June 2020 - Anne Philipp</span>
     186<span class="c1">#        - changed finale job_file to filename from config file</span>
     187<span class="c1">#          instead of generating from the template filename</span>
    185188<span class="c1">#</span>
    186189<span class="c1"># @License:</span>
    187 <span class="c1">#    (C) Copyright 2014-2019.</span>
     190<span class="c1">#    (C) Copyright 2014-2020.</span>
    188191<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    189192<span class="c1">#</span>
     
    234237<span class="kn">from</span> <span class="nn">Mods.get_mars_data</span> <span class="kn">import</span> <span class="n">get_mars_data</span>
    235238<span class="kn">from</span> <span class="nn">Mods.prepare_flexpart</span> <span class="kn">import</span> <span class="n">prepare_flexpart</span>
    236 <span class="c1">#from Classes.ControlFile import ControlFile</span>
    237 
    238239
    239240<span class="c1"># ------------------------------------------------------------------------------</span>
     
    291292<span class="sd">        module and variable settings for the ECMWF environment as well as</span>
    292293<span class="sd">        the job call and mail report instructions.</span>
    293 <span class="sd">        Default is &quot;job.temp&quot;.</span>
     294<span class="sd">        Default is _config.TEMPFILE_JOB.</span>
    294295
    295296<span class="sd">    c : ControlFile</span>
     
    313314
    314315        <span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span>
    315                                 <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;.ksh&#39;</span><span class="p">)</span>
     316                                <span class="n">_config</span><span class="o">.</span><span class="n">FILE_JOB_OD</span><span class="p">)</span>
    316317
    317318        <span class="c1"># divide time periode into specified number of job chunks</span>
     
    351352
    352353        <span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span>
    353                                 <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;oper.ksh&#39;</span><span class="p">)</span>
     354                                <span class="n">_config</span><span class="o">.</span><span class="n">FILE_JOB_OP</span><span class="p">)</span>
    354355
    355356        <span class="n">c</span><span class="o">.</span><span class="n">start_date</span> <span class="o">=</span> <span class="s1">&#39;$</span><span class="si">{MSJ_YEAR}</span><span class="s1">$</span><span class="si">{MSJ_MONTH}</span><span class="s1">$</span><span class="si">{MSJ_DAY}</span><span class="s1">&#39;</span>
     
    376377<span class="sd">    ----------</span>
    377378<span class="sd">    jtemplate : str</span>
    378 <span class="sd">        Job template file from sub-directory &quot;_templates&quot; for</span>
     379<span class="sd">        Job template file from sub-directory &quot;Templates&quot; for</span>
    379380<span class="sd">        submission to ECMWF. It contains all necessary</span>
    380381<span class="sd">        module and variable settings for the ECMWF environment as well as</span>
    381382<span class="sd">        the job call and mail report instructions.</span>
    382 <span class="sd">        Default is &quot;job.temp&quot;.</span>
     383<span class="sd">        Default is _config.TEMPFILE_JOB.</span>
    383384
    384385<span class="sd">    job_file : str</span>
  • Documentation/html/_modules/tools.html

    r6931f61 r08c9091  
    186186<span class="c1">#</span>
    187187<span class="c1"># @License:</span>
    188 <span class="c1">#    (C) Copyright 2014-2019.</span>
     188<span class="c1">#    (C) Copyright 2014-2020.</span>
    189189<span class="c1">#    Anne Philipp, Leopold Haimberger</span>
    190190<span class="c1">#</span>
  • Documentation/html/_sources/Documentation/Input/examples.rst.txt

    r6931f61 r08c9091  
    1212.. code-block:: bash
    1313
    14         CONTROL_CERA
    15         CONTROL_CERA.global
    16         CONTROL_CERA.public
    17         CONTROL_EA5
    18         CONTROL_EA5.global
    19         CONTROL_EA5.public
    20         CONTROL_EI
    21         CONTROL_EI.global
    22         CONTROL_EI.public
    23         CONTROL_OD.ELDA.FC.eta.ens.double
    24         CONTROL_OD.ENFO.CF
    25         CONTROL_OD.ENFO.CV
    26         CONTROL_OD.ENFO.PF
    27         CONTROL_OD.ENFO.PF.36hours
    28         CONTROL_OD.ENFO.PF.ens
    29         CONTROL_OD.OPER.4V.operational
    30         CONTROL_OD.OPER.FC.36hours
    31         CONTROL_OD.OPER.FC.eta.global
    32         CONTROL_OD.OPER.FC.eta.highres
    33         CONTROL_OD.OPER.FC.gauss.highres
    34         CONTROL_OD.OPER.FC.operational
    35         CONTROL_OD.OPER.FC.twicedaily.1hourly
    36         CONTROL_OD.OPER.FC.twicedaily.3hourly
     14        CONTROL_CERA
     15        CONTROL_CERA.global
     16        CONTROL_CERA.public
     17        CONTROL_EA5
     18        CONTROL_EA5.global
     19        CONTROL_EA5.public
     20        CONTROL_EI
     21        CONTROL_EI.global
     22        CONTROL_EI.public
     23        CONTROL_OD.ELDA.FC.eta.ens.double
     24        CONTROL_OD.ENFO.CF
     25        CONTROL_OD.ENFO.CV
     26        CONTROL_OD.ENFO.PF
     27        CONTROL_OD.ENFO.PF.36hours
     28        CONTROL_OD.ENFO.PF.ens
     29        CONTROL_OD.OPER.4V.operational
     30        CONTROL_OD.OPER.FC.36hours
     31        CONTROL_OD.OPER.FC.eta.global
     32        CONTROL_OD.OPER.FC.eta.highres
     33        CONTROL_OD.OPER.FC.gauss.highres
     34        CONTROL_OD.OPER.FC.operational
     35        CONTROL_OD.OPER.FC.twicedaily.1hourly
     36        CONTROL_OD.OPER.FC.twicedaily.3hourly
    3737
    3838.. note::
  • Documentation/html/_sources/Documentation/Input/templates.rst.txt

    r6931f61 r08c9091  
    182182        case $${HOST} in
    183183          *ecg*)
    184                   module unload grib_api
    185                   module unload emos
    186                   module load python3
    187                   module load eccodes
    188                   module load emos/455-r64
    189                   export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
    190                   ;;
    191                   *cca*)
    192                   module switch PrgEnv-cray PrgEnv-intel
    193                   module load python3
    194                   module load eccodes
    195                   module load emos/455-r64
    196                   export SCRATCH=${TMPDIR}
    197                   export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
     184          module unload grib_api
     185          module unload emos
     186          module load python3
     187          module load eccodes
     188          module load emos/455-r64
     189          export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
     190          ;;
     191          *cca*)
     192          module switch PrgEnv-cray PrgEnv-intel
     193          module load python3
     194          module load eccodes
     195          module load emos/455-r64
     196          export SCRATCH=${TMPDIR}
     197          export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
    198198          ;;
    199199        esac
     
    267267        case $$$${HOST} in
    268268          *ecg*)
    269                   module unload grib_api
    270                   module unload emos
    271                   module load python3
    272                   module load eccodes
    273                   module load emos/455-r64
     269          module unload grib_api
     270          module unload emos
     271          module load python3
     272          module load eccodes
     273          module load emos/455-r64
    274274          export PATH=$$$${PATH}:$fp_root_path
    275275          ;;
    276276          *cca*)
    277                   module switch PrgEnv-cray PrgEnv-intel
    278                   module load python3
    279                   module load eccodes
    280                   module load emos/455-r64
     277          module switch PrgEnv-cray PrgEnv-intel
     278          module load python3
     279          module load eccodes
     280          module load emos/455-r64
    281281          export SCRATCH=$$$${TMPDIR}
    282282          export PATH=$$$${PATH}:$fp_root_path
  • Documentation/html/_sources/Installation/gateway.rst.txt

    r6931f61 r08c9091  
    157157.. code-block:: bash
    158158
    159     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
    160     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
    161     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
    162     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
    163     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
    164     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     159    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./rwgrib2.f90
     160    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./phgrreal.f90
     161    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./grphreal.f90
     162    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./ftrafo.f90
     163    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./calc_etadot.f90
     164    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./posnam.f90
    165165    gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
    166166    ln -sf calc_etadot_fast.out calc_etadot
    167167    lrwxrwxrwx. 1 <username> at 20 Mar  8 14:11 calc_etadot -> calc_etadot_fast.out
    168168    SUCCESS!   
    169 
  • Documentation/html/_sources/Installation/local.rst.txt

    r6931f61 r73308e0  
    311311
    312312    # Output of setup.sh   
    313         WARNING: installdir has not been specified
    314         flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
    315         Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
    316 
    317         Using makefile: makefile_local_gfortran
    318         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
    319         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
    320         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
    321         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
    322         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
    323         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
    324         gfortran  rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
    325         ln -sf calc_etadot_fast.out calc_etadot
    326 
    327         lrwxrwxrwx. 1 <username> tmc 20 15. Mär 13:31 ./calc_etadot -> calc_etadot_fast.out
    328 
     313    WARNING: installdir has not been specified
     314    flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
     315    Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
     316
     317    Using makefile: makefile_local_gfortran
     318    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./rwgrib2.f90
     319    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./phgrreal.f90
     320    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./grphreal.f90
     321    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./ftrafo.f90
     322    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./calc_etadot.f90
     323    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./posnam.f90
     324    gfortran  rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
     325    ln -sf calc_etadot_fast.out calc_etadot
     326
     327    lrwxrwxrwx. 1 <username> tmc 20 Aug 12  10:59 ./calc_etadot -> calc_etadot_fast.out
     328
  • Documentation/html/_sources/Installation/remote.rst.txt

    r6931f61 r08c9091  
    171171.. code-block:: bash
    172172
    173     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
    174     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
    175     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
    176     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
    177     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
    178     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     173    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./rwgrib2.f90
     174    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./phgrreal.f90
     175    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./grphreal.f90
     176    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./ftrafo.f90
     177    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./calc_etadot.f90
     178    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./posnam.f90
    179179    gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
    180180    ln -sf calc_etadot_fast.out calc_etadot
  • Documentation/html/_sources/Support/known_bugs_issues.rst.txt

    r5bee29a r08c9091  
    3131.. code-block:: bash
    3232
    33         ECCODES ERROR   :   wrong size (184) for pv it contains 276 values
    34         ECCODES ERROR   :  get: pv Passed array is too small
    35         ... ERROR CODE: 250
    36         ... ERROR MESSAGE:
    37                 Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
    38         ... FORTRAN PROGRAM FAILED!
     33    ECCODES ERROR   :   wrong size (184) for pv it contains 276 values
     34    ECCODES ERROR   :  get: pv Passed array is too small
     35    ... ERROR CODE: 250
     36    ... ERROR MESSAGE:
     37          Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
     38    ... FORTRAN PROGRAM FAILED!
    3939
    4040then you have set a wrong maximum level in the :literal:`CONTROL` file!
     
    4848.. note::
    4949 
    50         Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
     50     Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
  • Documentation/html/_sources/quick_start.rst.txt

    r6931f61 r08c9091  
    428428Vertical velocity           
    429429    The vertical velocity for ``FLEXPART`` is not directly available from MARS and has to be calculated.
    430     There are several options for this, and the following parameters are responsible for the selection.                 See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
     430    There are several options for this, and the following parameters are responsible for the selection. See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
    431431    Usually, one has to decide between ``GAUSS 1`` and ``ETA 1``. ``GAUSS 1`` means that spectral fields of the horizontal wind fields and the divergence are retrieved and that the vertical velocity is calculate using the continuity equation. ``ETA 1`` means that horizontal wind fields etadot are retrieved on a regular lat-lon grid. It is recommended to use ``ETA 1`` where possible, as there is a substantial computational overhead for solving the continuity equation.
    432432
     
    445445    The grid and domain parameters depends on each other. ``grid`` refers to the grid resolution. It can be given as decimal values (e.g., ``1.`` meaning 1.0°), or as in previous versions of flex_extract, as integer values refering to 1/1000 degrees (e.g., ``1000`` means also 1°). The code applies common sense to determine what format is to be assumed.
    446446    After selecting grid, the ``domain`` has to be defined. The extension in longitude or latitude direction must be an integer multiple of ``grid``.
    447    
    448                
     447
     448
    449449    The horizontal resolution for spectral fields is set by the parameter ``RESOL``. For information about how to select an appropriate value please read the explanation of the MARS keyword RESOL as found `in this entry of the ECMWF on-line documentation <https://confluence.ecmwf.int/display/UDOC/Post-processing+keywords#Post-processingkeywords-resol>`_ and  `this table (also ECMWF documentation) <https://confluence.ecmwf.int/display/UDOC/Retrieve#Retrieve-Truncationbeforeinterpolation>`_.
    450450   
     
    463463Flux data
    464464    Flux fields are always forecast fields and contain values of the fluxes accumulated since the start of the respective forecast. As certain re-analysis dataset cover all time steps with analysis fields, it was necessary to define a new parameter set for the definition of the flux fields. The following parameters are used specifically for flux fields. ``ACCTYPE`` is the field type (must be a type of forecast), ``ACCTIME``  the forecast starting time, and  ``ACCMAXSTEP`` the maximum forecast step;``DTIME`` the temporal resolution. ACCTYPE is assumed to be the same during the whole period given by ACCTIME and ACCMAXSTEP. These values will be set automatically if not provided in a ``CONTROL`` file.
    465            
     465
    466466    .. code-block:: bash
    467467       :caption: Example setting for the definition of flux fields.
  • Documentation/html/genindex.html

    r6931f61 r08c9091  
    360360      <li><a href="Documentation/Api/api_python.html#ControlFile.ControlFile.debug">debug (ControlFile.ControlFile attribute)</a>
    361361</li>
    362       <li><a href="Documentation/Api/api_python.html#install.del_convert_build">del_convert_build() (in module install)</a>
     362      <li><a href="Documentation/Api/api_python.html#install.del_fortran_build">del_fortran_build() (in module install)</a>
    363363</li>
    364364      <li><a href="Documentation/Api/api_python.html#UioFiles.UioFiles.delete_files">delete_files() (UioFiles.UioFiles method)</a>
     
    600600      <li><a href="Documentation/Api/api_python.html#install.mk_compilejob">mk_compilejob() (in module install)</a>
    601601</li>
    602       <li><a href="Documentation/Api/api_python.html#install.mk_convert_build">mk_convert_build() (in module install)</a>
    603 </li>
    604602      <li><a href="Documentation/Api/api_python.html#get_mars_data.mk_dates">mk_dates() (in module get_mars_data)</a>
    605603</li>
    606604      <li><a href="Documentation/Api/api_python.html#install.mk_env_vars">mk_env_vars() (in module install)</a>
     605</li>
     606      <li><a href="Documentation/Api/api_python.html#install.mk_fortran_build">mk_fortran_build() (in module install)</a>
    607607</li>
    608608      <li><a href="Documentation/Api/api_python.html#install.mk_job_template">mk_job_template() (in module install)</a>
  • Documentation/html/quick_start.html

    r6931f61 r08c9091  
    551551</dd>
    552552<dt>Vertical velocity</dt><dd><p>The vertical velocity for <code class="docutils literal notranslate"><span class="pre">FLEXPART</span></code> is not directly available from MARS and has to be calculated.
    553 There are several options for this, and the following parameters are responsible for the selection.                 See <a class="reference internal" href="Documentation/vertco.html"><span class="doc">Vertical wind</span></a> for a detailed explanation. Using <code class="docutils literal notranslate"><span class="pre">ETADIFF</span> <span class="pre">1</span></code>, <code class="docutils literal notranslate"><span class="pre">OMEGA</span> <span class="pre">1</span></code> and <code class="docutils literal notranslate"><span class="pre">OMEGADIFF</span> <span class="pre">1</span></code> is recommended for debugging and testing only.
     553There are several options for this, and the following parameters are responsible for the selection. See <a class="reference internal" href="Documentation/vertco.html"><span class="doc">Vertical wind</span></a> for a detailed explanation. Using <code class="docutils literal notranslate"><span class="pre">ETADIFF</span> <span class="pre">1</span></code>, <code class="docutils literal notranslate"><span class="pre">OMEGA</span> <span class="pre">1</span></code> and <code class="docutils literal notranslate"><span class="pre">OMEGADIFF</span> <span class="pre">1</span></code> is recommended for debugging and testing only.
    554554Usually, one has to decide between <code class="docutils literal notranslate"><span class="pre">GAUSS</span> <span class="pre">1</span></code> and <code class="docutils literal notranslate"><span class="pre">ETA</span> <span class="pre">1</span></code>. <code class="docutils literal notranslate"><span class="pre">GAUSS</span> <span class="pre">1</span></code> means that spectral fields of the horizontal wind fields and the divergence are retrieved and that the vertical velocity is calculate using the continuity equation. <code class="docutils literal notranslate"><span class="pre">ETA</span> <span class="pre">1</span></code> means that horizontal wind fields etadot are retrieved on a regular lat-lon grid. It is recommended to use <code class="docutils literal notranslate"><span class="pre">ETA</span> <span class="pre">1</span></code> where possible, as there is a substantial computational overhead for solving the continuity equation.</p>
    555555<div class="literal-block-wrapper docutils container" id="id5">
  • Documentation/html/searchindex.js

    r6931f61 r73308e0  
    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the documentation","Auto-generated documentation for the Fortran programme","Auto-generated documentation for the Python scripts","CONTROL file changes","The compilation job script <code class=\"docutils literal notranslate\"><span class=\"pre\">compilejob.ksh</span></code>","The CONTROL file","The CONTROL parameters","ECMWF user credential file <code class=\"docutils literal notranslate\"><span class=\"pre\">ECMWF_ENV</span></code>","CONTROL file examples","The Fortran makefile for <code class=\"docutils literal notranslate\"><span class=\"pre\">calc_etadot</span></code>","The job script <code class=\"docutils literal notranslate\"><span class=\"pre\">job.ksh</span></code>","The executable script - <code class=\"docutils literal notranslate\"><span class=\"pre\">run.sh</span></code>","The installation script - <code class=\"docutils literal notranslate\"><span class=\"pre\">setup.sh</span></code>","Templates","Application modes","Program flow","Auto-generated documentation","Disaggregation of flux data","Control &amp; input data","Output data","Overview","Vertical wind","Access modes","Link collection","Hints for data set selection","Available data sets for member-state users","Available data sets for public users","Metrics","Static code analysis","Test cases","Gateway mode installation","Local mode installation","Remote mode installation","FAQ - Frequently asked questions","Known Bugs and Issues","Developer Team","Changelog","Developer Guide","Code-Level Documentation","ECMWF Data","Evaluation","Welcome to the <code class=\"docutils literal notranslate\"><span class=\"pre\">flex_extract</span></code> Documentation!","Installation","Usage","Support","ToDos"],titleterms:{"case":29,"class":2,"long":19,"new":[19,36],"public":[26,42,43],"static":28,CDS:[31,34],The:[4,5,6,9,10,11,12],accept:42,access:22,addit:[0,6,19],adjust:43,agreement:[],analysi:28,api:[31,34],applic:[14,15],ask:33,auto:[1,2,16],avail:[24,25,26],block:0,bug:[34,36,44],calc_etadot:[9,19,34],calc_etadot_nml:13,calcul:21,can:[24,33],cera:43,certain:43,chang:[3,36],changelog:36,check:2,code:[28,34,38],collect:23,combin:[42,43],comparison:29,compil:4,compilejob:4,content:[7,11,12,19],continu:21,control:[3,5,6,8,18,43],controlfil:2,convert:[],coordin:[],credenti:7,data:[6,17,18,19,24,25,26,34,39,43],dataset:[42,43],definit:43,depend:[30,31,32,42],destin:34,develop:[35,37],diagramm:0,differ:15,disaggreg:[2,17,19],distribut:33,document:[0,1,2,16,38,41],doe:[4,10],domain:6,download:42,eccod:34,ecflexpart:2,ecmwf:[7,31,39,42],ecmwf_env:[7,13],ensembl:19,environ:[30,31,32],equat:21,era5:34,era:43,error:34,evalu:40,exampl:[4,5,8,10,15],execut:11,faq:[33,44],featur:[36,43],field:[6,17,19],file:[3,5,6,7,8,19,21,29,43],find:24,finder:[],fix:36,flex_extract:[41,42],flexpart:[19,42],flow:15,flux:[6,17,19],forecast:19,format:5,fort:19,fortran:[1,9,19,34,42],frequent:33,from:[21,33],full:42,gatewai:[30,34,43],gener:[1,2,6,15,16],get_mars_data:2,grib:[19,29],gributil:2,guid:37,hint:[24,43],horizont:21,how:24,index:19,input:[18,19],instal:[2,12,30,31,32,33,34,42],installscript:13,interim:43,issu:[34,44],job:[4,10,43],jobscript:13,known:[34,44],ksh:[4,10],level:[25,38],librari:33,licenc:42,line:0,link:23,list:44,local:[15,31,43],mail:44,makefil:9,mar:[19,21,29],marsretriev:2,member:[15,25],metric:27,mode:[14,15,22,30,31,32,43],model:25,modul:2,older:17,onlin:[],oper:43,option:[11,12],other:17,out:24,output:[19,21],overview:20,packag:33,paramet:[6,11,12,21,34,43],parti:33,pre:21,precipit:[17,19],predict:19,prepar:[21,30,31,32,43],prepare_flexpart:2,problem:34,program:[2,15,19,34,42],programm:1,proper:43,pure:[],python:2,question:33,quick:[],registr:42,releas:[34,36],remot:[32,43],report:44,request:[19,29],rest:[],retriev:[],run:11,script:[2,4,10,11,12],section:6,select:[24,43],sequenc:0,set:[15,24,25,26],setup:12,softwar:0,some:[],specif:43,specifi:[],sphinx:0,standard:19,start:[],state:25,submiss:11,submit:[2,11],submitscript:13,support:44,surfac:25,system:44,team:35,temp:[],templat:13,temporari:19,test:[29,30,31,42],testcas:[],third:33,ticket:44,time:6,todo:45,tool:2,uiofil:2,updat:0,usag:[11,12,43],user:[6,7,15,25,26],using:21,veloc:21,version:17,vertic:[6,21],web:31,welcom:41,what:[4,10,24,33],wind:[6,21],workflow:15}})
  • Documentation/html/todo.html

    r6931f61 r08c9091  
    164164  <div class="section" id="todos">
    165165<h1>ToDos<a class="headerlink" href="#todos" title="Permalink to this headline">¶</a></h1>
    166 <div class="admonition-todo admonition">
    167 <p class="admonition-title">Todo</p>
    168 <p>#PS some information to be added.</p>
    169 </div>
    170 <p class="todo-source">(The <a class="reference internal" href="Documentation/Input/examples.html#id1"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/Documentation/Input/examples.rst, line 38.)</p>
    171 <div class="admonition-todo admonition">
    172 <p class="admonition-title">Todo</p>
    173 <p>#PS NEEDS MORE DESCRIPTION</p>
    174 </div>
    175 <p class="todo-source">(The <a class="reference internal" href="Documentation/output.html#id1"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/Documentation/output.rst, line 208.)</p>
    176 <div class="admonition-todo admonition">
    177 <p class="admonition-title">Todo</p>
    178 <p>#PS needs to be rephrased</p>
    179 </div>
    180 <p class="todo-source">(The <a class="reference internal" href="quick_start.html#id2"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/quick_start.rst, line 420.)</p>
    181 <div class="admonition-todo admonition">
    182 <p class="admonition-title">Todo</p>
    183 <p>#PS shouldn’t we explain how to define a domain??</p>
    184 </div>
    185 <p class="todo-source">(The <a class="reference internal" href="quick_start.html#id3"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/quick_start.rst, line 453.)</p>
    186 <div class="admonition-todo admonition">
    187 <p class="admonition-title">Todo</p>
    188 <p>#PS for which application would this be typical?</p>
    189 </div>
    190 <p class="todo-source">(The <a class="reference internal" href="quick_start.html#id4"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/quick_start.rst, line 474.)</p>
    191166</div>
    192167
  • For_developers/Sphinx/Source/Documentation/Input/examples.rst

    r6931f61 r08c9091  
    1212.. code-block:: bash
    1313
    14         CONTROL_CERA
    15         CONTROL_CERA.global
    16         CONTROL_CERA.public
    17         CONTROL_EA5
    18         CONTROL_EA5.global
    19         CONTROL_EA5.public
    20         CONTROL_EI
    21         CONTROL_EI.global
    22         CONTROL_EI.public
    23         CONTROL_OD.ELDA.FC.eta.ens.double
    24         CONTROL_OD.ENFO.CF
    25         CONTROL_OD.ENFO.CV
    26         CONTROL_OD.ENFO.PF
    27         CONTROL_OD.ENFO.PF.36hours
    28         CONTROL_OD.ENFO.PF.ens
    29         CONTROL_OD.OPER.4V.operational
    30         CONTROL_OD.OPER.FC.36hours
    31         CONTROL_OD.OPER.FC.eta.global
    32         CONTROL_OD.OPER.FC.eta.highres
    33         CONTROL_OD.OPER.FC.gauss.highres
    34         CONTROL_OD.OPER.FC.operational
    35         CONTROL_OD.OPER.FC.twicedaily.1hourly
    36         CONTROL_OD.OPER.FC.twicedaily.3hourly
     14        CONTROL_CERA
     15        CONTROL_CERA.global
     16        CONTROL_CERA.public
     17        CONTROL_EA5
     18        CONTROL_EA5.global
     19        CONTROL_EA5.public
     20        CONTROL_EI
     21        CONTROL_EI.global
     22        CONTROL_EI.public
     23        CONTROL_OD.ELDA.FC.eta.ens.double
     24        CONTROL_OD.ENFO.CF
     25        CONTROL_OD.ENFO.CV
     26        CONTROL_OD.ENFO.PF
     27        CONTROL_OD.ENFO.PF.36hours
     28        CONTROL_OD.ENFO.PF.ens
     29        CONTROL_OD.OPER.4V.operational
     30        CONTROL_OD.OPER.FC.36hours
     31        CONTROL_OD.OPER.FC.eta.global
     32        CONTROL_OD.OPER.FC.eta.highres
     33        CONTROL_OD.OPER.FC.gauss.highres
     34        CONTROL_OD.OPER.FC.operational
     35        CONTROL_OD.OPER.FC.twicedaily.1hourly
     36        CONTROL_OD.OPER.FC.twicedaily.3hourly
    3737
    3838.. note::
  • For_developers/Sphinx/Source/Documentation/Input/templates.rst

    r6931f61 r08c9091  
    182182        case $${HOST} in
    183183          *ecg*)
    184                   module unload grib_api
    185                   module unload emos
    186                   module load python3
    187                   module load eccodes
    188                   module load emos/455-r64
    189                   export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
    190                   ;;
    191                   *cca*)
    192                   module switch PrgEnv-cray PrgEnv-intel
    193                   module load python3
    194                   module load eccodes
    195                   module load emos/455-r64
    196                   export SCRATCH=${TMPDIR}
    197                   export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
     184          module unload grib_api
     185          module unload emos
     186          module load python3
     187          module load eccodes
     188          module load emos/455-r64
     189          export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
     190          ;;
     191          *cca*)
     192          module switch PrgEnv-cray PrgEnv-intel
     193          module load python3
     194          module load eccodes
     195          module load emos/455-r64
     196          export SCRATCH=${TMPDIR}
     197          export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
    198198          ;;
    199199        esac
     
    267267        case $$$${HOST} in
    268268          *ecg*)
    269                   module unload grib_api
    270                   module unload emos
    271                   module load python3
    272                   module load eccodes
    273                   module load emos/455-r64
     269          module unload grib_api
     270          module unload emos
     271          module load python3
     272          module load eccodes
     273          module load emos/455-r64
    274274          export PATH=$$$${PATH}:$fp_root_path
    275275          ;;
    276276          *cca*)
    277                   module switch PrgEnv-cray PrgEnv-intel
    278                   module load python3
    279                   module load eccodes
    280                   module load emos/455-r64
     277          module switch PrgEnv-cray PrgEnv-intel
     278          module load python3
     279          module load eccodes
     280          module load emos/455-r64
    281281          export SCRATCH=$$$${TMPDIR}
    282282          export PATH=$$$${PATH}:$fp_root_path
  • For_developers/Sphinx/Source/Installation/gateway.rst

    r6931f61 r08c9091  
    157157.. code-block:: bash
    158158
    159     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
    160     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
    161     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
    162     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
    163     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
    164     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     159    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./rwgrib2.f90
     160    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./phgrreal.f90
     161    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./grphreal.f90
     162    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./ftrafo.f90
     163    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./calc_etadot.f90
     164    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./posnam.f90
    165165    gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
    166166    ln -sf calc_etadot_fast.out calc_etadot
    167167    lrwxrwxrwx. 1 <username> at 20 Mar  8 14:11 calc_etadot -> calc_etadot_fast.out
    168168    SUCCESS!   
    169 
  • For_developers/Sphinx/Source/Installation/local.rst

    r6931f61 r73308e0  
    311311
    312312    # Output of setup.sh   
    313         WARNING: installdir has not been specified
    314         flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
    315         Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
    316 
    317         Using makefile: makefile_local_gfortran
    318         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
    319         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
    320         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
    321         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
    322         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
    323         gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
    324         gfortran  rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
    325         ln -sf calc_etadot_fast.out calc_etadot
    326 
    327         lrwxrwxrwx. 1 <username> tmc 20 15. Mär 13:31 ./calc_etadot -> calc_etadot_fast.out
    328 
     313    WARNING: installdir has not been specified
     314    flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
     315    Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
     316
     317    Using makefile: makefile_local_gfortran
     318    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./rwgrib2.f90
     319    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./phgrreal.f90
     320    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./grphreal.f90
     321    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./ftrafo.f90
     322    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./calc_etadot.f90
     323    gfortran   -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c ./posnam.f90
     324    gfortran  rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
     325    ln -sf calc_etadot_fast.out calc_etadot
     326
     327    lrwxrwxrwx. 1 <username> tmc 20 Aug 12  10:59 ./calc_etadot -> calc_etadot_fast.out
     328
  • For_developers/Sphinx/Source/Installation/remote.rst

    r6931f61 r08c9091  
    171171.. code-block:: bash
    172172
    173     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./rwgrib2.f90
    174     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./phgrreal.f90
    175     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./grphreal.f90
    176     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./ftrafo.f90
    177     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./calc_etadot.f90
    178     gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c     ./posnam.f90
     173    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./rwgrib2.f90
     174    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./phgrreal.f90
     175    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./grphreal.f90
     176    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./ftrafo.f90
     177    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./calc_etadot.f90
     178    gfortran    -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian   -c    ./posnam.f90
    179179    gfortran   rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out  -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib  -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3    -fopenmp
    180180    ln -sf calc_etadot_fast.out calc_etadot
  • For_developers/Sphinx/Source/Support/known_bugs_issues.rst

    r8a53342 r08c9091  
    3131.. code-block:: bash
    3232
    33         ECCODES ERROR   :   wrong size (184) for pv it contains 276 values
    34         ECCODES ERROR   :  get: pv Passed array is too small
    35         ... ERROR CODE: 250
    36         ... ERROR MESSAGE:
    37                 Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
    38         ... FORTRAN PROGRAM FAILED!
     33    ECCODES ERROR   :   wrong size (184) for pv it contains 276 values
     34    ECCODES ERROR   :  get: pv Passed array is too small
     35    ... ERROR CODE: 250
     36    ... ERROR MESSAGE:
     37          Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
     38    ... FORTRAN PROGRAM FAILED!
    3939
    4040then you have set a wrong maximum level in the :literal:`CONTROL` file!
     
    4848.. note::
    4949 
    50         Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
     50     Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
  • For_developers/Sphinx/Source/quick_start.rst

    r6931f61 r08c9091  
    428428Vertical velocity           
    429429    The vertical velocity for ``FLEXPART`` is not directly available from MARS and has to be calculated.
    430     There are several options for this, and the following parameters are responsible for the selection.                 See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
     430    There are several options for this, and the following parameters are responsible for the selection. See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
    431431    Usually, one has to decide between ``GAUSS 1`` and ``ETA 1``. ``GAUSS 1`` means that spectral fields of the horizontal wind fields and the divergence are retrieved and that the vertical velocity is calculate using the continuity equation. ``ETA 1`` means that horizontal wind fields etadot are retrieved on a regular lat-lon grid. It is recommended to use ``ETA 1`` where possible, as there is a substantial computational overhead for solving the continuity equation.
    432432
     
    445445    The grid and domain parameters depends on each other. ``grid`` refers to the grid resolution. It can be given as decimal values (e.g., ``1.`` meaning 1.0°), or as in previous versions of flex_extract, as integer values refering to 1/1000 degrees (e.g., ``1000`` means also 1°). The code applies common sense to determine what format is to be assumed.
    446446    After selecting grid, the ``domain`` has to be defined. The extension in longitude or latitude direction must be an integer multiple of ``grid``.
    447    
    448                
     447
     448
    449449    The horizontal resolution for spectral fields is set by the parameter ``RESOL``. For information about how to select an appropriate value please read the explanation of the MARS keyword RESOL as found `in this entry of the ECMWF on-line documentation <https://confluence.ecmwf.int/display/UDOC/Post-processing+keywords#Post-processingkeywords-resol>`_ and  `this table (also ECMWF documentation) <https://confluence.ecmwf.int/display/UDOC/Retrieve#Retrieve-Truncationbeforeinterpolation>`_.
    450450   
     
    463463Flux data
    464464    Flux fields are always forecast fields and contain values of the fluxes accumulated since the start of the respective forecast. As certain re-analysis dataset cover all time steps with analysis fields, it was necessary to define a new parameter set for the definition of the flux fields. The following parameters are used specifically for flux fields. ``ACCTYPE`` is the field type (must be a type of forecast), ``ACCTIME``  the forecast starting time, and  ``ACCMAXSTEP`` the maximum forecast step;``DTIME`` the temporal resolution. ACCTYPE is assumed to be the same during the whole period given by ACCTIME and ACCMAXSTEP. These values will be set automatically if not provided in a ``CONTROL`` file.
    465            
     465
    466466    .. code-block:: bash
    467467       :caption: Example setting for the definition of flux fields.
  • Source/Pythontest/TestUIOFiles.py

    r8028176 ree9aaec  
    4444        testfile = os.path.join(self.testpath, 'test.test')
    4545        open(testfile, 'w').close()
    46         iofile = UioFiles(testfile, 'test.test')
     46        iofile = UioFiles(self.testpath, 'test.test')
    4747        iofile.delete_files()
    48         assert [] == UioFiles(testfile, 'test.test').files
     48        assert [] == UioFiles(self.testpath, 'test.test').files
    4949
    5050
  • Testing/Installation/Api_testscripts/test_cdsapi_fluxdata.py

    • Property mode changed from 100644 to 100755
  • Testing/Installation/Api_testscripts/test_cdsapi_modellevel.py

    • Property mode changed from 100644 to 100755
    r0a75335 r73308e0  
    88c.retrieve('reanalysis-era5-complete',
    99{
    10         'class'   : 'ea',
    11         'expver'  : '1',
    12         'stream'  : 'oper',
    13         'type'    : 'fc',
    14         'step'    : '3/to/12/by/3',
    15         'param'   : 't',
    16         'levtype' : 'ml',
    17         'levelist': '135/to/137',
    18         'date'    : '2013-01-01',
    19         'time'    : '06/18',
    20         'area'    : '50/-5/40/5',
    21         'grid'    : '1.0/1.0',
    22         'format'  : 'grib',
     10  'class'   : 'ea',
     11  'expver'  : '1',
     12  'stream'  : 'oper',
     13  'type'    : 'fc',
     14  'step'    : '3/to/12/by/3',
     15  'param'   : 't',
     16  'levtype' : 'ml',
     17  'levelist': '135/to/137',
     18  'date'    : '2013-01-01',
     19  'time'    : '06/18',
     20  'area'    : '50/-5/40/5',
     21  'grid'    : '1.0/1.0',
     22  'format'  : 'grib',
    2323}, 'download_era5_cdsapi.grib')
  • Testing/Installation/Api_testscripts/test_cdsapi_pressurelevel.py

    • Property mode changed from 100644 to 100755
    r5bf163a r73308e0  
    88c.retrieve("reanalysis-era5-pressure-levels",
    99{
    10         "variable": "temperature",
    11         "pressure_level": "1000",
    12         "product_type": "reanalysis",
    13         "year": "2008",
    14         "month": "01",
    15         "day": "01",
    16         "time": "12:00",
    17         "format": "grib"
     10 "variable": "temperature",
     11 "pressure_level": "1000",
     12 "product_type": "reanalysis",
     13 "year": "2008",
     14 "month": "01",
     15 "day": "01",
     16 "time": "12:00",
     17 "format": "grib"
    1818},
    1919"download_cdsapi.grib")
  • Testing/Installation/Api_testscripts/test_ecmwfapi_member.py

    • Property mode changed from 100644 to 100755
    r5bf163a r73308e0  
    77
    88server.retrieve({
    9         'stream'    : "oper",
    10         'levtype'   : "sfc",
    11         'param'     : "165.128/166.128/167.128",
    12         'dataset'   : "interim",
    13         'step'      : "0",
    14         'grid'      : "0.75/0.75",
    15         'time'      : "00/06/12/18",
    16         'date'      : "2014-07-01/to/2014-07-31",
    17         'type'      : "an",
    18         'class'     : "ei",
    19         'target'    : "download_erainterim_ecmwfapi.grib"
     9 'stream'    : "oper",
     10 'levtype'   : "sfc",
     11 'param'     : "165.128/166.128/167.128",
     12 'dataset'   : "interim",
     13 'step'      : "0",
     14 'grid'      : "0.75/0.75",
     15 'time'      : "00/06/12/18",
     16 'date'      : "2014-07-01/to/2014-07-31",
     17 'type'      : "an",
     18 'class'     : "ei",
     19 'target'    : "download_erainterim_ecmwfapi.grib"
    2020})
  • Testing/Installation/Api_testscripts/test_ecmwfapi_public.py

    • Property mode changed from 100644 to 100755
    r0a75335 r73308e0  
    77
    88server.retrieve({
    9         'stream'    : "enda",
    10         'levtype'   : "sfc",
    11         'param'     : "165.128/166.128/167.128",
    12         'dataset'   : "cera20c",
    13         'step'      : "0",
    14         'grid'      : "1./1.",
    15         'time'      : "00/06/12/18",
    16         'date'      : "2000-07-01/to/2000-07-31",
    17         'type'      : "an",
    18         'class'     : "ep",
    19     'number'    : "0",
    20         'target'    : "download_cera20c_ecmwfapi.grib"
     9 'stream'    : "enda",
     10 'levtype'   : "sfc",
     11 'param'     : "165.128/166.128/167.128",
     12 'dataset'   : "cera20c",
     13 'step'      : "0",
     14 'grid'      : "1./1.",
     15 'time'      : "00/06/12/18",
     16 'date'      : "2000-07-01/to/2000-07-31",
     17 'type'      : "an",
     18 'class'     : "ep",
     19 'number'    : "0",
     20 'target'    : "download_cera20c_ecmwfapi.grib"
    2121})
  • Testing/Installation/First_extraction/run.sh

    • Property mode changed from 100644 to 100755
  • Testing/Installation/First_extraction/run_local.sh

    • Property mode changed from 100644 to 100755
  • Testing/Installation/First_extraction/run_local_public.sh

    • Property mode changed from 100644 to 100755
  • Testing/Installation/setup.sh

    • Property mode changed from 100644 to 100755
  • Testing/Installation/setup_local.sh

    • Property mode changed from 100644 to 100755
  • Testing/Regression/Unit/Testfiles/CONTROL.test

    rbe6c0a2 r4f0a73c  
    11DTIME 3
    2 TYPE AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC
    3 TIME 00 00 00 00 00 00 06 00 00 00 00 00 12 12 12 12 12 12 18 12 12 12 12 12
    4 STEP 00 01 02 03 04 05 00 07 08 09 10 11 00 01 02 03 04 05 00 07 08 09 10 11
     2TYPE AN FC FC FC FC FC FC FC FC FC FC FC AN FC FC FC FC FC FC FC FC FC FC FC
     3TIME 00 00 00 00 00 00 00 00 00 00 00 00 12 12 12 12 12 12 12 12 12 12 12 12
     4STEP 00 01 02 03 04 05 06 07 08 09 10 11 00 01 02 03 04 05 06 07 08 09 10 11
    55CLASS EI
    66STREAM OPER
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