Index: documentation/Sphinx/source/api.rst
===================================================================
--- documentation/Sphinx/source/api.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/api.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,5 @@
+Auto Generated Documentation
+============================
+
+.. automodule:: disaggregation
+    :members:
Index: documentation/Sphinx/source/conf.py
===================================================================
--- documentation/Sphinx/source/conf.py	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/conf.py	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,175 @@
+# -*- coding: utf-8 -*-
+#
+# Configuration file for the Sphinx documentation builder.
+#
+# This file does only contain a selection of the most common options. For a
+# full list see the documentation:
+# http://www.sphinx-doc.org/en/master/config
+
+# -- Path setup --------------------------------------------------------------
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#
+import os
+import sys
+sys.path.insert(0, os.path.abspath('../../../source/python'))
+sys.path.insert(0, os.path.abspath('../../../source/python/mods'))
+sys.path.insert(0, os.path.abspath('../../../source/python/classes'))
+
+
+
+# -- Project information -----------------------------------------------------
+
+project = u'flex_extract'
+copyright = u'2018, Anne Philipp and Leopold Haimberger'
+author = u'Anne Philipp and Leopold Haimberger'
+
+# The short X.Y version
+version = u'7.1'
+# The full version, including alpha/beta/rc tags
+release = u'7.1 alpha'
+
+
+# -- General configuration ---------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
+# ones.
+extensions = [
+    'sphinx.ext.napoleon',
+    'sphinx.ext.autodoc',
+    'sphinx.ext.autosectionlabel',
+    'sphinx.ext.todo',
+    'sphinx.ext.coverage',
+    'sphinx.ext.mathjax',
+    'sphinx.ext.ifconfig',
+    'sphinx.ext.viewcode',
+    'sphinx.ext.githubpages',
+]
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = ['.rst', '.md', '.txt']
+
+# The master toctree document.
+master_doc = 'index'
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This pattern also affects html_static_path and html_extra_path .
+exclude_patterns = []
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+
+# -- Options for HTML output -------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'sphinx_rtd_theme'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further.  For a list of options available for each theme, see the
+# documentation.
+#
+# html_theme_options = {}
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+# Custom sidebar templates, must be a dictionary that maps document names
+# to template names.
+#
+# The default sidebars (for documents that don't match any pattern) are
+# defined by theme itself.  Builtin themes are using these templates by
+# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
+# 'searchbox.html']``.
+#
+# html_sidebars = {}
+
+
+# -- Options for HTMLHelp output ---------------------------------------------
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'flex_extractdoc'
+
+
+# -- Options for LaTeX output ------------------------------------------------
+
+latex_elements = {
+    # The paper size ('letterpaper' or 'a4paper').
+    #
+    # 'papersize': 'letterpaper',
+
+    # The font size ('10pt', '11pt' or '12pt').
+    #
+    # 'pointsize': '10pt',
+
+    # Additional stuff for the LaTeX preamble.
+    #
+    # 'preamble': '',
+
+    # Latex figure (float) alignment
+    #
+    # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title,
+#  author, documentclass [howto, manual, or own class]).
+latex_documents = [
+    (master_doc, 'flex_extract.tex', u'flex\\_extract Documentation',
+     u'Anne Philipp and Leopold Haimberger', 'manual'),
+]
+
+
+# -- Options for manual page output ------------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+    (master_doc, 'flex_extract', u'flex_extract Documentation',
+     [author], 1)
+]
+
+
+# -- Options for Texinfo output ----------------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+#  dir menu entry, description, category)
+texinfo_documents = [
+    (master_doc, 'flex_extract', u'flex_extract Documentation',
+     author, 'flex_extract', 'One line description of project.',
+     'Miscellaneous'),
+]
+
+
+# -- Extension configuration -------------------------------------------------
+
+# -- Options for todo extension ----------------------------------------------
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = True
Index: documentation/Sphinx/source/downloads.rst
===================================================================
--- documentation/Sphinx/source/downloads.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/downloads.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,6 @@
+Downloads
+=========
+
+Describe download options of flex_extract ....
+ 
+    UNDER CONSTRUCTION
Index: documentation/Sphinx/source/index.rst
===================================================================
--- documentation/Sphinx/source/index.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/index.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,106 @@
+.. flex_extract documentation master file, created by
+   sphinx-quickstart on Wed Oct 17 18:39:05 2018.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+Welcome to flex_extract's documentation!
+========================================
+.. raw:: html
+
+    <table style="width:100%;">
+      <tr>
+        <td style="width:200px;height:150px;">
+          <div style="width:200px;height:100px;">
+          <img style="width:100px;vertical-align: bottom;" src="_static/download_icon.png">
+          </div>
+          <h2>Downloads</h2>
+          <ul>
+            <li><a href="">Download Tar-ball</a></li>
+            <li><a href="">Git repository</a></li>
+            <li><a href="">History of Changes</a></li>
+          </ul>
+        </td>        
+        <td style="width:200px;height:150px;">
+          <div style="width:200px;height:100px;">
+          <img style="width:125px;vertical-align: bottom;" src="_static/prog_icon.png">
+          </div>
+          <h2>Program Structure</h2>
+          <ul>
+          <li><a href="">Overview</a></li>
+          <li><a href="">Program components</a></li>
+          <li><a href="">Program flow</a></li>
+          </ul>
+        </td>
+      </tr>
+      <tr>    
+        <td style="width:200px;height:150px;">
+          <div style="width:200px;height:100px;">
+          <img style="width:100px;vertical-align: bottom;" src="_static/install_icon.png">
+          </div>
+          <h2>Installation</h2>
+          <ul>
+          <li><a href="requirements.html">Requirements</a></li>
+          <li><a href="">Different operation modes</a></li>
+          <li><a href="">Test the installation</a></li>
+          </ul>
+        </td>       
+        <td style="width:200px;height:150px;">
+          <div style="width:200px;height:100px;">
+          <img style="width:100px;vertical-align: bottom;" src="_static/guide_icon.png">
+          </div>
+          <h2>User Guide</h2>
+          <ul>
+          <li><a href="">How to use</a></li>
+          <li><a href="">Control templates</a></li>
+          </ul>
+        </td> 
+      </tr>
+      <tr>
+        <td style="width:200px;height:150px;">
+          <div style="width:200px;height:100px;">
+          <img style="width:125px;vertical-align: bottom;" src="_static/api_icon.png">
+          </div>
+          <h2>API Index</h2>
+          <ul>
+          <li><a href="">Construction</a></li>
+          </ul>
+        </td>
+        <td style="width:200px;height:150px;">
+          <div style="width:200px;height:100px;">
+          <img style="width:100px;vertical-align: bottom;" src="_static/help_icon.png">
+          </div>
+          <h2>Support</h2>
+          <ul>
+            <li><a href="">Ticket system</a></li>
+            <li><a href="">Mailing list</a></li>
+            <li><a href="">Known bugs or issues</a></li>
+            <li><a href="">FAQ</a></li>
+          </ul>
+        </td>
+      </tr>
+    </table>
+    <p></p>
+    
+.. note::
+ 
+   License text put in here! Which one?
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Table of Contents:
+
+   downloads
+   installation
+   program_structure
+   user_guide
+   api
+   support
+   
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+
Index: documentation/Sphinx/source/installation.rst
===================================================================
--- documentation/Sphinx/source/installation.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/installation.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,6 @@
+Installation
+============
+
+Describe installation process flex_extract ....
+ 
+    UNDER CONSTRUCTION
Index: documentation/Sphinx/source/program_structure.rst
===================================================================
--- documentation/Sphinx/source/program_structure.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/program_structure.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,6 @@
+Program Structure
+=================
+
+Describe structure of flex_extract ....
+ 
+    UNDER CONSTRUCTION
Index: documentation/Sphinx/source/requirements.rst
===================================================================
--- documentation/Sphinx/source/requirements.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/requirements.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,6 @@
+Requirements
+============
+
+Describe the requirements to use flex_extract ....
+ 
+    UNDER CONSTRUCTION
Index: documentation/Sphinx/source/support.rst
===================================================================
--- documentation/Sphinx/source/support.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/support.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,6 @@
+Support
+=======
+
+Describe support options ....
+ 
+    UNDER CONSTRUCTION
Index: documentation/Sphinx/source/user_guide.rst
===================================================================
--- documentation/Sphinx/source/user_guide.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
+++ documentation/Sphinx/source/user_guide.rst	(revision 708c6674550abec09bd249f6654698bdeaed17d0)
@@ -0,0 +1,6 @@
+User Guide
+==========
+
+Describe using flex_extract ....
+ 
+    UNDER CONSTRUCTION
