#!/bin/bash

#input FP exec
test_dir=$1
base_dir=$2
FP_exec=$3
options_default=../options 

#echo FP_exec=$FP_exec
#echo $FLEXOUT_TMP

#suffix=$(date "+%y-%m-%d_%H%M%S")
#test_tmp=${FLEXOUT_TMP}${base_dir}${test_dir}
test_tmp=${base_dir}${test_dir}
#_${suffix}

#current_dir=$(pwd)
if [[ -d "$test_tmp" ]] ; then
  echo  $test_tmp already exists
else 
  echo create test in $test_tmp
  mkdir $test_tmp
fi

#copy default optios
echo copy default options from  $options_default
cp -r $options_default $test_tmp/options

#override default options
if [[ -d "$test_dir/options" ]] && [[  "$(ls -A ${test_dir}/options)" ]]; then
  cp -r ${test_dir}/options/* $test_tmp/options/
  echo copy specific options for this test from ${test_dir}/options
fi

# copy paths form repo source exec tmp dir 
echo copy ${test_dir}/pathnames
cp ${test_dir}/pathnames $test_tmp

# make output dir locally
if [[ -d "$test_tmp/output" ]]; then
  echo  $test_tmp/output already exists
else
  mkdir ${test_tmp}/output
  echo create ${test_tmp}/output
fi

if [[ -L "${test_tmp}/flexpartnoresm" ]]; then
  rm ${test_tmp}/flexpartnoresm
  echo remove existing link ${test_tmp}/flexpartnoresm  
fi
ln -s $FP_exec ${test_tmp}/flexpartnoresm
echo link  $FP_exec to ${test_tmp}/flexpartnoresm

echo $test_dir is ready to run
echo
#cd $test_tmp
#echo $(pwd)
#echo $FP_exec
#echo run $FP_exec '; stdout to  out.log' 
#$FP_exec   &> out.log # both out and err