#!/bin/ksh # On demand script for retrieving input for FLEXPART trajectory model # Version 6.0, September 2013 # Maintainer Leopold Haimberger leopold.haimberger@univie.ac.at # #@ shell = /usr/bin/ksh # NOTE: If calculation on Gaussian grid are required below, it is # recommended to send the job to the ECMWF HPC facility # NOTE: On hpce the class should be ns or np # NOTE: On ecgb it should be normal #ON HPC (with loadleveler) # start with ecaccess-job-submit -queueName c1a NAME_OF_THIS_FILE on gateway server # start with llsubmit NAME_OF_THIS_FILE directly on machine #@ shell = /usr/bin/ksh #@ class = ns #@ resources = ConsumableCpus(1) ConsumableMemory(32000MB) #@ job_name = flex_ecmwf #@ output = /scratch/ms/spatlh00/lh0/$(job_name).$(host).$(jobid).out #@ error = /scratch/ms/spatlh00/lh0/$(job_name).$(host).$(jobid).out #@ environment = COPY_ALL #@ queue # ON ECGB: # start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server # start with sbatch NAME_OF_THIS_FILE directly on machine #SBATCH --workdir=/scratch/ms/spatlh00/lh0 #SBATCH --qos=normal #SBATCH --job-name=flex_ecmwf #SBATCH --output=flex_ecmwf.%j.out #SBATCH --error=flex_ecmwf.%j.out #SBATCH --mail-type=FAIL #SBATCH --time=12:00:00 set -x JOBNAME=flex_ecmwf_${HOST} env ulimit -a export OMP_NUM_THREADS=1 export MARS_MULTITARGET_STRICT_FORMAT=1 #export SCRATCH=$TEMP export SCRATCHDIR=${SCRATCH}/${JOBNAME}_$$ [ -z "$WSHOME" ] && WSHOME=$HOME mkdir $SCRATCHDIR cd $SCRATCHDIR LOG_FILE=$SCRATCHDIR/${JOBNAME}_$$ exec 1>${LOG_FILE} CONTROLFILE=./CONTROL_ERA ################################### #BEGIN: modification of config file ################################### cat <CONTROL_ERA DAY1 20131107 DAY2 20131108 DTIME 3 M_TYPE AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC M_TIME 00 00 00 00 00 00 06 00 00 00 00 00 12 12 12 12 12 12 18 12 12 12 12 12 M_STEP 00 01 02 03 04 05 00 07 08 09 10 11 00 01 02 03 04 05 00 07 08 09 10 11 M_CLASS OD M_STREAM OPER M_NUMBER OFF M_EXPVER 1 M_GRID 200 M_LEFT 113000 M_LOWER 00000 M_UPPER 30000 M_RIGHT 190000 M_LEVEL 137 M_RESOL 799 M_GAUSS 0 M_ACCURACY 24 M_OMEGA 0 M_OMEGADIFF 0 M_ETA 1 M_ETADIFF 0 M_DPDETA 1 M_SMOOTH 0 M_FORMAT GRIB1 M_ADDPAR /27/28/173/186/187/188/235/139/39 PREFIX EH GATEWAY srvx7.img.univie.ac.at DESTINATION leo@genericSftp ECSTORAGE 1 ECTRANS 0 ECFSDIR ectmp:/${USER}/econdemand/ MAILOPS ${USER} MAILFAIL ${USER} EXEDIR . SOURCECODE ${WSHOME}/flex_extract_ecgate_V6.0 EOF # no changes below NRW=0 #ksh scripts for date manipulation juldate2() { let jc=$1 if (( ${#jc} < 8 )) then print "illegal date!" exit 1 fi let y=`echo $jc | cut -c1-4` let m1=`echo $jc | cut -c5` let m2=`echo $jc | cut -c6` m=$m1$m2 let d1=`echo $jc | cut -c7` let d2=`echo $jc | cut -c8` d=$d1$d2 let jd=367*y-7*(y+(m+9)/12)/4+275*m/9+d+1721014 let jd=jd+15-3*((y+(m-9)/7)/100+1)/4 print $jd } civildate2() { let jd=$1 if (( jd < 1721060 )) then print "Julian date not in AD." exit 1 fi let k=jd+68569 let n=4*k/146097 let k=k-\(146097*n+3\)/4 let y=4000*(k+1)/1461001 let k=k-1461*y/4+31 let m=80*k/2447 let d=k-\(2447*m\)/80 let k=m/11 let m=m+2-12*k let y=100*(n-49)+y+k [ $m -le 9 ] && m=0$m [ $d -le 9 ] && d=0$d print $y$m$d } date2m1() { let ymd=$1 let j1=`juldate2 $ymd` let j0=j1-1 civildate2 $j0 } date2p1() { let ymd=$1 let j1=`juldate2 $ymd` let j0=j1+1 civildate2 $j0 } marsinst() { MTYPE="${1}" MDAY="${2}" MTIME="${3}" MSTEP="${4}" MPAR="${5}" MFN=$6 MLTY=$7 MGRID="${8}" MLEV="${9}" RED=0 #if [[ ${MTYPE} != 'AN' ]] ; then MPAR2=`echo ${MPAR} | sed s,160/,,` MPAR2=`echo ${MPAR2} | sed s,27/,,` MPAR2=`echo ${MPAR2} | sed s,28/,,` MPAR2=`echo ${MPAR2} | sed s,173/,,` if [[ ${MPAR2} != ${MPAR} ]] ; then MPAR=${MPAR2} RED=1 fi #fi MAREA=${M_AREA} if [[ ${10} == 'GAUSSIAN=REDUCED,' ]] ; then MAREA=G fi if [[ -f ${MFN} ]] ; then rm ${MFN} fi cat <> marsjob RETRIEVE, TYPE=${MTYPE}, CLASS=${M_CLASS},NUMBER=${M_NUMBER}, EXPVER=${M_EXPVER},STREAM=${M_STREAM}, PARAM=${MPAR}, RESOL=${M_RESOL}, AREA=${MAREA}, GRID=${MGRID}, LEVTYPE=${MLTY}, LEVELIST=${MLEV}, ACCURACY=${M_ACCURACY}, DATE=${MDAY}, TIME=${MTIME}, STEP=${MSTEP},${10} TARGET="${MFN}" EOF if [[ ! -f 'OROLSM' && $RED -eq 1 ]] ; then cat <> marsjob RETRIEVE,TYPE=AN,TIME=0,STEP=0,CLASS=OD, PARAM=160/27/28/173, TARGET="OROLSM" EOF fi } marsflux() { MTYPE="${1}" MSTEP="${2}" cat <>mars_flux RETRIEVE, TYPE=${MTYPE}, CLASS=${M_CLASS},NUMBER=${M_NUMBER}, EXPVER=${M_EXPVER},STREAM=${M_STREAM}, PARAM=LSP/CP/SSHF/EWSS/NSSS/SSR, AREA=${M_AREA}, GRID=${D_GRID}, LEVTYPE=SFC, LEVELIST=OFF, ACCURACY=${M_ACCURACY}, REPRES=GG, DATE=${DAY1M1}/TO/${DAY2P1}, TIME=00/12, AC=N, STEP=${MSTEP}, TARGET="surf_${MSTEP}_ub" EOF } myerror() { echo $1 echo $2 echo $3 echo ABORT! for MUSER in $MAILFAIL do mailx -s ERROR:${JOBNAME} ${MUSER} <${LOG_FILE} done } # # MAIN SCRIPT CONTINUES HERE # #read CONTROL file, process specifications while read NAME PARA do if [[ $NAME == 'M_TYPE' || $NAME == 'M_TIME' || $NAME == 'M_STEP' ]] ; then eval "set -A $NAME $PARA" else eval "export $NAME='$PARA'" fi echo `echo $NAME`=$PARA done <${CONTROLFILE} if [ -z "$DAY1" -o -z "$DAY2" ]; then myerror 'DAY specification missing !' exit 1 fi #defaults [ -z "$M_EXPVER" ] && M_EXPVER=1 [ -z "$M_CLASS" ] && M_CLASS=OD [ -z "$M_STREAM" ] && M_STREAM=OPER [ -z "$M_NUMBER" ] && M_NUMBER=OFF [ -z "$M_TYPE" ] && set -A M_TYPE AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC [ -z "$M_TIME" ] && set -A M_TIME 00 00 00 00 00 00 06 00 00 00 00 00 12 12 12 12 12 12 18 12 12 12 12 12 [ -z "$M_STEP" ] && set -A M_STEP 00 01 02 03 04 05 00 07 08 09 10 11 00 01 02 03 04 05 00 07 08 09 10 11 [ -z "$DTIME" ] && DTIME=6 [ -z "$M_GRID" ] && M_GRID=1000 [ -z "$M_LOWER" ] && M_LOWER=-90000 [ -z "$M_LEFT" ] && M_LEFT=-179000 [ -z "$M_UPPER" ] && M_UPPER=90000 [ -z "$M_RIGHT" ] && M_RIGHT=180000 [ -z "$M_LEVEL" ] && M_LEVEL=91 [ -z "$M_LEVELIST" ] && M_LEVELIST=1/TO/$M_LEVEL [ -z "$M_ADDPAR" ] && M_ADDPAR='' [ -z "$M_RESOL" ] && M_RESOL=799 [ -z "$M_GAUSS" ] && M_GAUSS=0 [ -z "$M_SMOOTH" ] && M_SMOOTH=0 [ -z "$M_OMEGA" ] && M_OMEGA=0 [ -z "$M_OMEGADIFF" ] && M_OMEGADIFF=0 [ -z "$M_ETA" ] && M_ETA=0 [ -z "$M_ETADIFF" ] && M_ETADIFF=0 [ -z "$M_ETAPAR" ] && M_ETAPAR=77 [ -z "$M_DPDETA" ] && M_DPDETA=1 [ -z "$M_ACCURACY" ] && M_ACCURACY=24 [ -z "$EXEDIR" ] && EXEDIR=. [ -z "$SOURCECODE" ] && SOURCECODE=ecgate:flex_extract_ecgate [ -z "$GATEWAY" ] && GATEWAY='' [ -z "$DESTINATION" ] && DESTINATION='' [ -z "$PREFIX" ] && PREFIX=EN [ -z "$COMPRESSION" ] && COMPRESSION=grid_simple [ -z "$ECTRANS" ] && ECTRANS=0 [ -z "$ECSTORAGE" ] && ECSTORAGE=1 [ -z "$ECFSDIR" ] && ECFSDIR=ectmp: [ -z "$MAILOPS" ] && MAILOPS=${USER} [ -z "$MAILFAIL" ] && MAILFAIL=${USER} #additional dates for flux retrievals (polynomial interpolation) DAY1M1=`date2m1 ${DAY1}` DAY2P1=`date2p1 ${DAY2}` #julian dates for time loops JULDAY1=`juldate2 ${DAY1}` JULDAY2=`juldate2 ${DAY2}` echo JULDATES $JULDAY1 $JULDAY2 #check consistency if [ ${DAY1} -gt ${DAY2} ]; then `myerror "ERROR: DAY1 > DAY2: ${DAY1}, ${DAY2}"` exit 1 fi # determine number of gridpoints and whether grid is cyclic ZYK=`expr \( $M_RIGHT + 360000 \) % 360000 - \( $M_LEFT + 360000 \) % 360000 + $M_GRID` if [ $M_RIGHT -le $M_LEFT ] ; then if [ $M_RIGHT -le 0 ] ; then M_RIGHT=$(($M_RIGHT+360000)) else M_LEFT=$(($M_LEFT-360000)) fi fi if [[ $ZYK -ne 0 ]] ; then MAXB=$((($M_UPPER-($M_LOWER))/$M_GRID+1)) MAXL=$((($M_RIGHT-($M_LEFT))/$M_GRID+1)) if [[ $((($M_RIGHT-($M_LEFT))%$M_GRID)) -ne 0 || $((($M_UPPER-($M_LOWER))%$M_GRID)) -ne 0 ]] ; then myerror "ERROR: LAT/LON RANGE MUST BE INTEGER MULTIPLES OF GRID SIZE" "URLO: $M_UPPER $M_RIGHT $M_LOWER $M_LEFT GRID: $M_GRID" "GRID ASSUMED NON-CYCLIC" exit 1 fi else MAXL=$((($M_RIGHT-($M_LEFT))/$M_GRID+1)) MAXB=$((($M_UPPER-($M_LOWER))/$M_GRID+1)) if [[ $((($M_RIGHT-($M_LEFT))%$M_GRID)) -ne 0 || $((($M_UPPER-($M_LOWER))%$M_GRID)) -ne 0 ]] ; then myerror "ERROR: LAT/LON RANGE MUST BE INTEGER MULTIPLES OF GRID SIZE" "URLO: $M_UPPER $M_RIGHT $M_LOWER $M_LEFT GRID: $M_GRID" "GRID ASSUMED CYCLIC" exit 1 fi fi if [ $((180000/$M_GRID-$M_RESOL)) -lt 0 ] ; then if [ ${M_SMOOTH} -eq 0 ] ; then myerror "ERROR: OUTPUT GRID SPACING OF $((${M_GRID}/1000)).$((${M_GRID}%1000)) DEGREE IS TOO COARSE FOR GIVEN SPECTRAL RESOLUTION ${M_RESOL} " "USE M_SMOOTH FOR SMOOTHING OR FINER OUTPUT GRID" # exit 1 else if [ $((180000/$M_GRID-$M_SMOOTH)) -lt 0 ] ; then myerror "ERROR: OUTPUT GRID SPACING OF $((${M_GRID}/1000)).$((${M_GRID}%1000)) DEGREE IS TOO COARSE FOR GIVEN SMOOTHED SPECTRAL RESOLUTION ${M_SMOOTH} " fi fi fi # convert lat/lon to MARS format (degrees) if [[ $M_LEFT -lt 0 ]] ; then LLLO=$(($M_LEFT / 1000)).$((($M_LEFT)*(-1) % 1000)) else LLLO=$(($M_LEFT / 1000)).$(($M_LEFT % 1000)) fi if [[ $M_LOWER -lt 0 ]] ; then LLLA=$(($M_LOWER / 1000)).$(($M_LOWER*(-1) % 1000)) else LLLA=$(($M_LOWER / 1000)).$((($M_LOWER) % 1000)) fi if [[ $M_RIGHT -lt 0 ]] ; then URLO=$(($M_RIGHT / 1000)).$((($M_RIGHT)*(-1) % 1000)) else URLO=$(($M_RIGHT / 1000)).$(($M_RIGHT % 1000)) fi if [[ $M_UPPER -lt 0 ]] ; then URLA=$(($M_UPPER / 1000)).$((($M_UPPER)*(-1) % 1000)) else URLA=$(($M_UPPER / 1000)).$(($M_UPPER % 1000)) fi M_AREA=${URLA}/${LLLO}/${LLLA}/${URLO} if [ $M_GAUSS -eq 1 ] ; then # Gaussian grid detected D_GRID=$(($M_GRID / 1000)).$(($M_GRID % 1000)) G_GRID=OFF QG_GRID=OFF if [ $M_RESOL -le 799 ] ; then QG_GRID=$((($M_RESOL+1)/2)) fi D_GRID=${D_GRID}/${D_GRID} else D_GRID=$(($M_GRID / 1000)).$(($M_GRID % 1000)) G_GRID=$(($M_GRID / 1000)).$(($M_GRID % 1000)) G_GRID=${G_GRID}/${G_GRID} D_GRID=${D_GRID}/${D_GRID} fi G_LEVELIST=1/to/${M_LEVEL} #namelist cat <fort.4 &NAMGEN MAXL=${MAXL}, MAXB=${MAXB}, MLEVEL=${M_LEVEL}, MLEVELIST="${M_LEVELIST}", MNAUF=${M_RESOL},METAPAR=${M_ETAPAR}, RLO0=${LLLO}, RLO1=${URLO}, RLA0=${LLLA}, RLA1=${URLA}, MOMEGA=${M_OMEGA},MOMEGADIFF=${M_OMEGADIFF},MGAUSS=${M_GAUSS}, MSMOOTH=${M_SMOOTH},META=${M_ETA},METADIFF=${M_ETADIFF}, MDPDETA=${M_DPDETA} / &NAMFX2 NX=${MAXL}, NY=${MAXB}, MAXTIME=400,JPOLY=4, JHRF=${DTIME}, RLO0=${LLLO}, RLA0=${LLLA}, DX=${D_GRID}, DY=${D_GRID} / EOF if [[ $OS_VERSION == aix ]] ; then scp ecgb:${SOURCECODE}/source.tar . tar -xvf source.tar make -f Makefile.IBM FLXACC2 CONVERT2 CHECK else cp ${SOURCECODE}/source.tar . tar -xvf source.tar make -f Makefile.ecgb FLXACC2 CONVERT2 CHECK fi if [ $? -ne 0 ]; then ls myerror 'ERROR: FLXACC2 and CONVERT2 could not be compiled:' 'ABORT!' exit 1 else echo 'compile worked' fi # #MARS requests (field) # imax=6 set -A PARLIST U/V T Q LNSP SD/MSL/TCC/10U/10V/2T/2D 129/172/160${M_ADDPAR} set -A PARNAME 131/132 130 133 152 SURF OROLSM set -A REPR SH SH GG SH GG GG set -A UNIT 10 11 17 12 14 20 set -A LTY ML ML ML ML SFC SFC set -A GRID ${G_GRID} ${D_GRID} ${D_GRID} OFF ${D_GRID} ${D_GRID} set -A LEVELIST ${M_LEVELIST} ${M_LEVELIST} ${M_LEVELIST} 1 1 1 set -A FIELD 00 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 00 if [[ $M_OMEGA -eq 1 || $M_OMEGADIFF -eq 1 ]] ; then M_OMEGA=1 PARLIST[imax]=W PARNAME[imax]=135 REPR[imax]=SH UNIT[imax]=19 LTY[imax]=ML GRID[imax]=${D_GRID} LEVELIST[imax]=${M_LEVELIST} imax=$(($imax+1)) fi if [[ $M_ETA -eq 1 || $M_ETADIFF -eq 1 ]] ; then M_ETA=1 PARLIST[imax]=77 PARNAME[imax]=77 REPR[imax]=SH UNIT[imax]=21 LTY[imax]=ML GRID[imax]=${D_GRID} LEVELIST[imax]=${M_LEVELIST} imax=$(($imax+1)) fi if [[ $M_GAUSS -eq 2 ]] ; then PARLIST[imax]=VO PARNAME[imax]=138 REPR[imax]=SH UNIT[imax]=30 LTY[imax]=ML GRID[imax]=${G_GRID} LEVELIST[imax]=${G_LEVELIST} imax=$(($imax+1)) fi if [[ $M_ETA -eq 0 || $M_GAUSS -eq 1 || $M_ETADIFF -eq 1 ]] ; then PARLIST[imax]=D PARNAME[imax]=155 REPR[imax]=SH UNIT[imax]=13 LTY[imax]=ML GRID[imax]=${G_GRID} LEVELIST[imax]=${G_LEVELIST} LEVELIST[1]=${G_LEVELIST} # U/V needed on all levels for calculating ETA imax=$(($imax+1)) fi jmax=${#M_TYPE[*]} # M_TIME needs leading zeros while M_STEP must have leading zeros # to be consistent with MARS file naming convention # The following loop ensures this j=0 while [[ $j -lt $jmax ]] ; do if [[ ${M_TIME[$j]} -lt 10 ]] ; then M_TIME[$j]=0$((${M_TIME[$j]})) fi if [[ ${M_STEP[$j]} -lt 10 ]] ; then M_STEP[$j]=$((${M_STEP[$j]})) fi j=$(($j+1)) done echo ${M_TIME[*]} echo ${M_STEP[*]} rm mars_flux 2>/dev/null j=$DTIME while [[ $j -lt 13 ]] ; do marsflux ${M_TYPE[2]} ${FIELD[$j]} j=$(($j+$DTIME)) done mars mars_flux | grep -i -v 'MARS - INFO' [ $? -ne 0 ] && myerror "Job stopped because of failing MARS request" # # FLXACC job # ${EXEDIR}/FLXACC2 if [ -f OROLSM ] ; then rm OROLSM fi # # CONVERT job # #loop over DATE and TIME for CONVERT/CHECK/ECtrans job IJULDAY=${JULDAY1} while [ $IJULDAY -le $JULDAY2 ]; do MDATE=`civildate2 ${IJULDAY}` MDATEX=`echo ${MDATE} | cut -c3-8` i=0 rm marsjob 2>/dev/null #humidity on reduced Gaussian grid for initialization #of spectral transformations if [ ${M_GAUSS} -eq 1 ] ; then NGRID=$(( ( ${M_RESOL} + 1 ) / 2 )) marsinst ${M_TYPE[0]} ${DAY1} 00 00 Q fort.18 ML ${QG_GRID} 1 'GAUSSIAN=REDUCED,' set -e mars marsjob | grep -i -v 'MARS - INFO' [ $? -ne 0 ] && myerror "Job stopped because of failing MARS request" rm marsjob fi set -e set -A TYPEKEY ${M_TYPE[0]} j=$DTIME kmax=0 while [[ $j -lt $jmax ]] ; do if [[ ${M_TYPE[j]} != ${TYPEKEY[0]} ]] ; then if [[ $kmax == 1 ]] ; then if [[ ${M_TYPE[j]} != ${TYPEKEY[1]} ]] ; then set -A TYPEKEY ${TYPEKEY[0]} ${TYPEKEY[1]} ${M_TYPE[j]} kmax=2 fi else if [[ $kmax == 0 ]] ; then set -A TYPEKEY ${TYPEKEY[0]} ${M_TYPE[j]} kmax=1 else if [[ $kmax == 2 && ${M_TYPE[j]} != ${TYPEKEY[1]} ]] ; then if [[ $kmax == 2 && ${M_TYPE[j]} != ${TYPEKEY[2]} ]] ; then echo ${TYPEKEY[0]} ${TYPEKEY[1]} ${TYPEKEY[2]} ${M_TYPE[j]} myerror 'More than three different MARS TYPES not supported' exit 1 fi fi fi fi fi j=$(($j+$DTIME)) done set -A GRIDKEY $D_GRID mmax=1 i=0 while [[ $i -lt $imax ]] ; do if [[ ${GRID[$i]} == 'OFF' && ${PARLIST[$i]} != LNSP ]] ; then set -A GRIDKEY $D_GRID OFF mmax=2 fi i=$(($i+1)) done k=0 kmax=$(($kmax+1)) while [[ $k -lt $kmax ]] ; do MMTIME='' MMSTEP='' TSUFF='' SSUFF='' j=0 while [[ $j -lt $jmax ]] ; do if [[ ${M_TYPE[$j]} == ${TYPEKEY[$k]} ]] ; then if [[ `echo $MMTIME | grep ${M_TIME[$j]}` == '' ]] ; then MMTIME=${MMTIME}$TSUFF${M_TIME[$j]} TSUFF='/' fi if [[ `echo $MMSTEP | grep ${M_STEP[$j]}` == '' ]] ; then MMSTEP=${MMSTEP}$SSUFF${M_STEP[$j]} SSUFF='/' fi fi j=$(($j+$DTIME)) done m=0 while [[ $m -lt $mmax ]] ; do MMPAR='' PSUFF='' i=0 while [[ $i -lt $imax ]] ; do if [[ ${LTY[$i]} == ML && ${GRID[$i]} == ${GRIDKEY[m]} && ${PARLIST[$i]} != LNSP ]] ; then if [[ `echo $MMPAR | grep ${PARLIST[$i]}` == '' ]] ; then MMPAR=${MMPAR}$PSUFF${PARLIST[$i]} PSUFF='/' fi fi i=$(($i+1)) done marsinst ${TYPEKEY[$k]} ${MDATE} ${MMTIME} ${MMSTEP} $MMPAR "[param].[date].[time].[step]" ML ${GRIDKEY[$m]} ${LEVELIST[$m]} mars marsjob | grep -i -v 'MARS - INFO' [ $? -ne 0 ] && myerror "Job stopped because of failing MARS request" rm marsjob m=$(($m+1)) done # LNSP treated separately since it exists only on 1 level marsinst ${TYPEKEY[$k]} ${MDATE} ${MMTIME} ${MMSTEP} LNSP "[param].[date].[time].[step]" ML OFF 1 mars marsjob | grep -i -v 'MARS - INFO' [ $? -ne 0 ] && myerror "Job stopped because of failing MARS request" rm marsjob # For some data classes, MARS adds GRIB table number to parameter number, # e.g. for Temperature it is 130.128 instead of just 130 # set +e TNR=`ls 131*${MDATE}.${M_TIME[00]}00.${M_STEP[00]} | awk -F . '{print $2}' - | grep -v ${MDATE}`. set -e if [[ $TNR != '.' ]] ; then TNR=.$TNR fi # SURF treated separately since it exists only on 1 level marsinst ${TYPEKEY[$k]} ${MDATE} ${MMTIME} ${MMSTEP} ${PARLIST[4]} "SURF${TNR}[date].[time].[step]" SFC $D_GRID OFF mars marsjob | grep -i -v 'MARS - INFO' [ $? -ne 0 ] && myerror "Job stopped because of failing MARS request" rm marsjob # OROLSM treated separately since it exists only on 1 level marsinst ${TYPEKEY[$k]} ${MDATE} ${MMTIME} ${MMSTEP} ${PARLIST[5]} "OROLSM${TNR}[date].[time].[step]" SFC $D_GRID OFF mars marsjob | grep -i -v 'MARS - INFO' [ $? -ne 0 ] && myerror "Job stopped because of failing MARS request" rm marsjob k=$(($k+1)) done j=0 while [[ $j -lt $jmax ]] ; do TIME=${FIELD[j]} XTIME=${TIME}00 set +e i=0 while [[ $i -lt $imax ]] ; do \rm fort.${UNIT[$i]} 2>/dev/null if [[ ${PARLIST[$i]} == U/V ]] ; then cat 131${TNR}${MDATE}.${M_TIME[$j]}00.${M_STEP[$j]} 132${TNR}${MDATE}.${M_TIME[$j]}00.${M_STEP[$j]} > fort.${UNIT[$i]} rm 131${TNR}${MDATE}.${M_TIME[$j]}00.${M_STEP[$j]} 132${TNR}${MDATE}.${M_TIME[$j]}00.${M_STEP[$j]} else mv ${PARNAME[$i]}${TNR}${MDATE}.${M_TIME[$j]}00.${M_STEP[$j]} fort.${UNIT[$i]} fi i=$(($i+1)) done # flux data need special GRIB conversion #if [ ${M_FORMAT} == GRIB2 ] ; then # grib_set -w shortName!=lsp,shortName!=cp,shortName!=ewss,shortName!=nsss -s edition=2,productDefinitionTemplateNumber=8 flux${MDATE}${TIME} flux${MDATE}${TIME}.grib2 #else # mv flux${MDATE}${TIME} flux${MDATE}${TIME}.grib2 #fi ${EXEDIR}/CONVERT2 INFILE=${PREFIX}${MDATEX}${TIME} if [ -s fort.15 ]; then cp fort.15 ${INFILE} cat fort.14 >> ${INFILE} cat flux${MDATE}${TIME} >> ${INFILE} cat OROLSM >> ${INFILE} cat fort.20 >> ${INFILE} # # Convert also surface fields to GRIB2 if needed # # Note: GRIB2 surface fields are incompatible with FLEXPART versions < 9.2 # # To enable additional compression # set packingType="grid_jpeg"; # this is rather time consuming. if [ ${M_FORMAT} == GRIB2 ] ; then grib_set -s edition=2,productDefinitionTemplateNumber=8 $INFILE ${INFILE}_2 mv ${INFILE}_2 ${INFILE} if [ ${COMPRESSION} != grid_simple ] ; then cat >rule.filter</dev/null ln -s ${INFILE} fort.15 [ -s CHECK.SUCCESS ] && rm CHECK.SUCCESS ${EXEDIR}/CHECK #check fields if [ -s CHECK.SUCCESS ]; then SUCCESS=1 else myerror 'ERROR: check on ENfile failed:' ${INFILE} "ABORT!" exit 1 fi #ECtrans if [ $SUCCESS -eq 1 -a $ECTRANS -eq 1 ] ; then ectrans -overwrite -gateway ${GATEWAY} -remote ${DESTINATION} -source $INFILE fi if [[ $M_OMEGA -eq 1 && $SUCCESS -eq 1 && $ECTRANS -eq 1 ]] ; then ectrans -overwrite -gateway ${GATEWAY} -remote ${DESTINATION} -source OMEGA${MDATEX}${TIME} fi #ECFS if [ $SUCCESS -eq 1 -a $ECSTORAGE -eq 1 ] ; then ecp -o $INFILE $ECFSDIR fi if [[ $SUCCESS -eq 1 && $ECSTORAGE -eq 1 && $M_OMEGA -eq 1 ]] ; then ecp -o OMEGA${MDATEX}${TIME} $ECFSDIR fi rm ${INFILE}_2 ${INFILE} fort.15 flux${MDATE}${TIME}* OMEGA${MDATEX}${TIME} fort.25 j=$(($j+$DTIME)) #done TIME done (( IJULDAY = IJULDAY + 1 )) #done JULDAY done #any warnings ? [ $NRW -gt 0 ] && echo There were $NRW warnings ! #mail logfile (list MAILOPS) for MUSER in $MAILOPS do mailx -s ${JOBNAME} ${MUSER} <${LOG_FILE} done # # cleanup # cd ${SCRATCH} echo $SCRATCHDIR not removed! #\rm -fR $SCRATCHDIR exit 0