source: flex_extract.git/templates/job.template @ c5074d2

dev
Last change on this file since c5074d2 was c5074d2, checked in by Anne Philipp <anne.philipp@…>, 16 months ago

added making of namelist file and jobscript via genshi templates

  • Property mode set to 100644
File size: 1.6 KB
Line 
1#!/bin/ksh
2
3# ON ECGB:
4# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
5# start with sbatch NAME_OF_THIS_FILE directly on machine
6
7#SBATCH --workdir=/scratch/ms/$usergroup/$username
8#SBATCH --qos=normal
9#SBATCH --job-name=flex_ecmwf
10#SBATCH --output=flex_ecmwf.%j.out
11#SBATCH --error=flex_ecmwf.%j.out
12#SBATCH --mail-type=FAIL
13#SBATCH --time=12:00:00
14
15## CRAY specific batch requests
16##PBS -N flex_ecmwf
17##PBS -q np
18##PBS -S /usr/bin/ksh
19## -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${PBS_JOBID}.out
20## job output is in .ecaccess_DO_NOT_REMOVE
21##PBS -j oe
22##PBS -V
23##PBS -l EC_threads_per_task=24
24##PBS -l EC_memory_per_task=32000MB
25
26set -x
27export VERSION=$version_number
28case $${HOST} in
29  *ecg*)
30  module load python
31  module unload grib_api
32  module unload emos
33  module load grib_api/1.14.5
34  module load emos/437-r64
35  export PATH=$${PATH}:$fp_root_path
36  ;;
37  *cca*)
38  module switch PrgEnv-cray PrgEnv-intel
39  module load grib_api
40  module load emos
41  module load python
42  export SCRATCH=$${TMPDIR}
43  export PATH=$${PATH}:$fp_root_path
44  ;;
45esac
46
47cd $${SCRATCH}
48mkdir -p python$$$$
49cd python$$$$
50
51export CONTROL=CONTROL
52
53cat >$${CONTROL}<<EOF
54EOF
55
56
57submit.py --controlfile=$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1
58
59if [ $? -eq 0 ] ; then
60  l=0
61  for muser in `grep -i MAILOPS $${CONTROL}`; do
62      if [ $${l} -gt 0 ] ; then 
63         mail -s flex.$${HOST}.$$$$ $${muser} <prot
64      fi
65      l=$(($${l}+1))
66  done
67else
68  l=0
69  for muser in `grep -i MAILFAIL $${CONTROL}`; do
70      if [ $${l} -gt 0 ] ; then 
71         mail -s "ERROR! flex.$${HOST}.$$$$" $${muser} <prot
72      fi
73      l=$(($${l}+1))
74  done
75fi
76
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