source: flex_extract.git/templates/compilejob.template @ ad10eca

ctbtodev
Last change on this file since ad10eca was e585e1b, checked in by Anne Philipp <anne.philipp@…>, 5 years ago

new testrun

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File size: 1.9 KB
Line 
1#!/bin/ksh
2
3# ON ECGB:
4# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
5# start with sbatch NAME_OF_THIS_FILE directly on machine
6
7#SBATCH --workdir=/scratch/ms/$usergroup/$username
8#SBATCH --qos=normal
9#SBATCH --job-name=flex_ecmwf
10#SBATCH --output=flex_ecmwf.%j.out
11#SBATCH --error=flex_ecmwf.%j.out
12#SBATCH --mail-type=FAIL
13#SBATCH --time=12:00:00
14
15## CRAY specific batch requests
16##PBS -N flex_ecmwf
17##PBS -q ns
18##PBS -S /usr/bin/ksh
19##PBS -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${Jobname}.$${Job_ID}.out
20# job output is in .ecaccess_DO_NOT_REMOVE
21##PBS -j oe
22##PBS -V
23##PBS -l EC_threads_per_task=1
24##PBS -l EC_memory_per_task=3200MB
25
26set -x
27export VERSION=$version_number
28case $${HOST} in
29  *ecg*)
30  module unload eccodes
31#  module load python
32  module unload grib_api
33  module unload emos
34  module load grib_api/1.26.1
35  module load emos/457-r64
36  export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts
37  export MAKEFILE=$makefile
38  ;;
39  *cca*)
40  module switch PrgEnv-cray PrgEnv-intel
41  module load grib_api
42  module load emos
43  module load python
44  echo $${GROUP}
45  echo $${HOME}
46  echo $${HOME} | awk -F / '{print $1, $2, $3, $4}'
47  export GROUP=`echo $${HOME} | awk -F / '{print $4}'`
48  export SCRATCH=/scratch/ms/$${GROUP}/$${USER}
49  export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts
50  export MAKEFILE=$makefile
51  ;;
52esac
53
54mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION}
55cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION}   # if FLEXPART_ROOT is not set this means cd to the home directory
56tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar
57cd source/fortran
58\rm *.o *.mod $fortran_program 
59make -f $${MAKEFILE} >flexcompile 2>flexcompile
60
61ls -l $fortran_program >>flexcompile
62if [ $$? -eq 0 ]; then
63  echo 'SUCCESS!' >>flexcompile
64  mail -s flexcompile.$${HOST}.$$$$ $${USER} <flexcompile
65else
66  echo Environment: >>flexcompile
67  env >> flexcompile
68  mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER} <flexcompile
69fi
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