source: flex_extract.git/templates/compilejob.template @ 34b247b

dev
Last change on this file since 34b247b was 34b247b, checked in by Anne Philipp <anne.philipp@…>, 10 months ago

new installation

  • Property mode set to 100644
File size: 1.9 KB
Line 
1#!/bin/ksh
2
3# ON ECGB:
4# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE  on gateway server
5# start with sbatch NAME_OF_THIS_FILE directly on machine
6
7#SBATCH --workdir=/scratch/ms/$usergroup/$username
8#SBATCH --qos=normal
9#SBATCH --job-name=flex_ecmwf
10#SBATCH --output=flex_ecmwf.%j.out
11#SBATCH --error=flex_ecmwf.%j.out
12#SBATCH --mail-type=FAIL
13#SBATCH --time=12:00:00
14
15## CRAY specific batch requests
16##PBS -N flex_ecmwf
17##PBS -q ns
18##PBS -S /usr/bin/ksh
19##PBS -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${Jobname}.$${Job_ID}.out
20# job output is in .ecaccess_DO_NOT_REMOVE
21##PBS -j oe
22##PBS -V
23##PBS -l EC_threads_per_task=1
24##PBS -l EC_memory_per_task=3200MB
25
26set -x
27export VERSION=$version_number
28case $${HOST} in
29  *ecg*)
30#  module load python
31#  module unload grib_api
32  module unload emos
33#  module load grib_api/1.14.5
34  module load emos/437-r64
35  export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts
36  export MAKEFILE=$makefile
37  ;;
38  *cca*)
39  module switch PrgEnv-cray PrgEnv-intel
40  module load grib_api
41  module load emos
42  module load python
43  echo $${GROUP}
44  echo $${HOME}
45  echo $${HOME} | awk -F / '{print $1, $2, $3, $4}'
46  export GROUP=`echo $${HOME} | awk -F / '{print $4}'`
47  export SCRATCH=/scratch/ms/$${GROUP}/$${USER}
48  export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts
49  export MAKEFILE=$makefile
50  ;;
51esac
52
53mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION}
54cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION}   # if FLEXPART_ROOT is not set this means cd to the home directory
55tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar
56cd source/fortran
57\rm *.o *.mod $fortran_program 
58make -f $${MAKEFILE} >flexcompile 2>flexcompile
59
60ls -l $fortran_program >>flexcompile
61if [ $$? -eq 0 ]; then
62  echo 'SUCCESS!' >>flexcompile
63  mail -s flexcompile.$${HOST}.$$$$ $${USER} <flexcompile
64else
65  echo Environment: >>flexcompile
66  env >> flexcompile
67  mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER} <flexcompile
68fi
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