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| 58 | <div class="version"> |
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| 59 | 7.1 |
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| 136 | <li><a href="index.html">Module code</a> »</li> |
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| 137 | |
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| 138 | <li>submit</li> |
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| 152 | |
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| 153 | <h1>Source code for submit</h1><div class="highlight"><pre> |
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| 154 | <span></span><span class="ch">#!/usr/bin/env python</span> |
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| 155 | <span class="c1"># -*- coding: utf-8 -*-</span> |
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| 156 | <span class="c1">#*******************************************************************************</span> |
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| 157 | <span class="c1"># @Author: Anne Fouilloux (University of Oslo)</span> |
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| 158 | <span class="c1">#</span> |
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| 159 | <span class="c1"># @Date: October 2014</span> |
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| 160 | <span class="c1">#</span> |
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| 161 | <span class="c1"># @Change History:</span> |
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| 162 | <span class="c1">#</span> |
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| 163 | <span class="c1"># November 2015 - Leopold Haimberger (University of Vienna):</span> |
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| 164 | <span class="c1"># - job submission on ecgate and cca</span> |
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| 165 | <span class="c1"># - job templates suitable for twice daily operational dissemination</span> |
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| 166 | <span class="c1">#</span> |
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| 167 | <span class="c1"># February 2018 - Anne Philipp (University of Vienna):</span> |
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| 168 | <span class="c1"># - applied PEP8 style guide</span> |
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| 169 | <span class="c1"># - added documentation</span> |
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| 170 | <span class="c1"># - minor changes in programming style (for consistence)</span> |
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| 171 | <span class="c1"># - changed path names to variables from config file</span> |
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| 172 | <span class="c1"># - added option for writing mars requests to extra file</span> |
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[2625ca8] | 173 | <span class="c1"># additionally, as option without submitting the mars jobs</span> |
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| 174 | <span class="c1"># - splitted submit function to use genshi templates for the</span> |
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| 175 | <span class="c1"># job script and avoid code duplication</span> |
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[274f9ef] | 176 | <span class="c1">#</span> |
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| 177 | <span class="c1"># @License:</span> |
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[2625ca8] | 178 | <span class="c1"># (C) Copyright 2014-2019.</span> |
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| 179 | <span class="c1"># Anne Philipp, Leopold Haimberger</span> |
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[274f9ef] | 180 | <span class="c1">#</span> |
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[2625ca8] | 181 | <span class="c1"># This work is licensed under the Creative Commons Attribution 4.0</span> |
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| 182 | <span class="c1"># International License. To view a copy of this license, visit</span> |
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| 183 | <span class="c1"># http://creativecommons.org/licenses/by/4.0/ or send a letter to</span> |
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| 184 | <span class="c1"># Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</span> |
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[274f9ef] | 185 | <span class="c1">#*******************************************************************************</span> |
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[2625ca8] | 186 | <span class="sd">'''This script allows the user to extract meteorological fields from the ECMWF.</span> |
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| 187 | |
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| 188 | <span class="sd">It prepares the settings for retrieving the data from ECMWF servers and</span> |
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| 189 | <span class="sd">process the resulting files to prepare them for the use with FLEXPART or</span> |
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| 190 | <span class="sd">FLEXTRA.</span> |
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| 191 | |
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| 192 | <span class="sd">If it is supposed to work locally then it works through the necessary</span> |
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| 193 | <span class="sd">functions get_mars_data and prepare_flexpart. Otherwise it prepares</span> |
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| 194 | <span class="sd">a job script (korn shell) which will do the necessary work on the</span> |
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| 195 | <span class="sd">ECMWF server. This script will de submitted via the ecaccess command</span> |
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| 196 | <span class="sd">ecaccess-job-submit.</span> |
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| 197 | |
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| 198 | <span class="sd">This file can also be imported as a module which then contains the following</span> |
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| 199 | <span class="sd">functions:</span> |
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| 200 | |
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| 201 | <span class="sd"> * main - the main function of the script</span> |
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| 202 | <span class="sd"> * submit - calls mk_jobscript depending on operation mode and submits its</span> |
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| 203 | <span class="sd"> * mk_jobscript - creates the job script from a template</span> |
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| 204 | |
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| 205 | <span class="sd">Type: submit.py --help</span> |
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| 206 | <span class="sd">to get information about command line parameters.</span> |
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| 207 | <span class="sd">Read the documentation for usage instructions.</span> |
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| 208 | <span class="sd">'''</span> |
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[274f9ef] | 209 | |
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| 210 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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| 211 | <span class="c1"># MODULES</span> |
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| 212 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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| 213 | <span class="kn">import</span> <span class="nn">os</span> |
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| 214 | <span class="kn">import</span> <span class="nn">sys</span> |
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| 215 | <span class="kn">import</span> <span class="nn">subprocess</span> |
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| 216 | <span class="kn">import</span> <span class="nn">inspect</span> |
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| 217 | <span class="kn">import</span> <span class="nn">collections</span> |
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[2625ca8] | 218 | <span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span> |
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[274f9ef] | 219 | |
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| 220 | <span class="c1"># software specific classes and modules from flex_extract</span> |
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| 221 | <span class="kn">import</span> <span class="nn">_config</span> |
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[f66f990] | 222 | <span class="kn">from</span> <span class="nn">mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span> |
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[274f9ef] | 223 | <span class="n">submit_job_to_ecserver</span><span class="p">,</span> <span class="n">read_ecenv</span><span class="p">)</span> |
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| 224 | <span class="kn">from</span> <span class="nn">mods.get_mars_data</span> <span class="k">import</span> <span class="n">get_mars_data</span> |
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| 225 | <span class="kn">from</span> <span class="nn">mods.prepare_flexpart</span> <span class="k">import</span> <span class="n">prepare_flexpart</span> |
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| 226 | <span class="kn">from</span> <span class="nn">classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span> |
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| 227 | |
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| 228 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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[2625ca8] | 229 | <span class="c1"># METHODS</span> |
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[274f9ef] | 230 | <span class="c1"># ------------------------------------------------------------------------------</span> |
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| 231 | |
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| 232 | <div class="viewcode-block" id="main"><a class="viewcode-back" href="../api.html#submit.main">[docs]</a><span class="k">def</span> <span class="nf">main</span><span class="p">():</span> |
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| 233 | <span class="sd">'''Get the arguments from script call and from CONTROL file.</span> |
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| 234 | <span class="sd"> Decides from the argument "queue" if the local version</span> |
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| 235 | <span class="sd"> is done "queue=None" or the gateway version with "queue=ecgate"</span> |
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| 236 | <span class="sd"> or "queue=cca".</span> |
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| 237 | |
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| 238 | <span class="sd"> Parameters</span> |
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| 239 | <span class="sd"> ----------</span> |
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| 240 | |
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| 241 | <span class="sd"> Return</span> |
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| 242 | <span class="sd"> ------</span> |
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| 243 | |
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| 244 | <span class="sd"> '''</span> |
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| 245 | |
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[f66f990] | 246 | <span class="n">c</span><span class="p">,</span> <span class="n">ppid</span><span class="p">,</span> <span class="n">queue</span><span class="p">,</span> <span class="n">job_template</span> <span class="o">=</span> <span class="n">setup_controldata</span><span class="p">()</span> |
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[274f9ef] | 247 | |
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| 248 | <span class="c1"># on local side</span> |
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[f66f990] | 249 | <span class="c1"># starting from an ECMWF server this would also be the local side</span> |
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[274f9ef] | 250 | <span class="n">called_from_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">()</span> |
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[f66f990] | 251 | <span class="k">if</span> <span class="n">queue</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span> |
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[274f9ef] | 252 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="s1">'/'</span><span class="p">:</span> |
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| 253 | <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">called_from_dir</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">)</span> |
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| 254 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="s1">'/'</span><span class="p">:</span> |
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| 255 | <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">called_from_dir</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">outputdir</span><span class="p">)</span> |
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| 256 | <span class="n">get_mars_data</span><span class="p">(</span><span class="n">c</span><span class="p">)</span> |
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| 257 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">request</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">c</span><span class="o">.</span><span class="n">request</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span> |
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[f66f990] | 258 | <span class="n">prepare_flexpart</span><span class="p">(</span><span class="n">ppid</span><span class="p">,</span> <span class="n">c</span><span class="p">)</span> |
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[2625ca8] | 259 | <span class="n">exit_message</span> <span class="o">=</span> <span class="s1">'FLEX_EXTRACT IS DONE!'</span> |
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[274f9ef] | 260 | <span class="k">else</span><span class="p">:</span> |
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[2625ca8] | 261 | <span class="n">exit_message</span> <span class="o">=</span> <span class="s1">'PRINTING MARS_REQUESTS DONE!'</span> |
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| 262 | <span class="c1"># send files to ECMWF server</span> |
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[274f9ef] | 263 | <span class="k">else</span><span class="p">:</span> |
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[f66f990] | 264 | <span class="n">submit</span><span class="p">(</span><span class="n">job_template</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">queue</span><span class="p">)</span> |
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[2625ca8] | 265 | <span class="n">exit_message</span> <span class="o">=</span> <span class="s1">'FLEX_EXTRACT JOB SCRIPT IS SUBMITED!'</span> |
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| 266 | |
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| 267 | <span class="n">normal_exit</span><span class="p">(</span><span class="n">exit_message</span><span class="p">)</span> |
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[274f9ef] | 268 | |
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| 269 | <span class="k">return</span></div> |
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| 270 | |
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| 271 | <div class="viewcode-block" id="submit"><a class="viewcode-back" href="../api.html#submit.submit">[docs]</a><span class="k">def</span> <span class="nf">submit</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">queue</span><span class="p">):</span> |
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[2625ca8] | 272 | <span class="sd">'''Prepares the job script and submits it to the specified queue.</span> |
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[274f9ef] | 273 | |
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| 274 | <span class="sd"> Parameters</span> |
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| 275 | <span class="sd"> ----------</span> |
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[2625ca8] | 276 | <span class="sd"> jtemplate : str</span> |
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[274f9ef] | 277 | <span class="sd"> Job template file from sub-directory "_templates" for</span> |
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| 278 | <span class="sd"> submission to ECMWF. It contains all necessary</span> |
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| 279 | <span class="sd"> module and variable settings for the ECMWF environment as well as</span> |
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| 280 | <span class="sd"> the job call and mail report instructions.</span> |
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| 281 | <span class="sd"> Default is "job.temp".</span> |
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| 282 | |
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[2625ca8] | 283 | <span class="sd"> c : ControlFile</span> |
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[274f9ef] | 284 | <span class="sd"> Contains all the parameters of CONTROL file and</span> |
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| 285 | <span class="sd"> command line.</span> |
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| 286 | |
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[2625ca8] | 287 | <span class="sd"> queue : str</span> |
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[274f9ef] | 288 | <span class="sd"> Name of queue for submission to ECMWF (e.g. ecgate or cca )</span> |
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| 289 | |
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| 290 | <span class="sd"> Return</span> |
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| 291 | <span class="sd"> ------</span> |
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| 292 | |
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| 293 | <span class="sd"> '''</span> |
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| 294 | |
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[f66f990] | 295 | <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">oper</span><span class="p">:</span> |
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[274f9ef] | 296 | <span class="c1"># --------- create on demand job script ------------------------------------</span> |
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[2625ca8] | 297 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">purefc</span><span class="p">:</span> |
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[274f9ef] | 298 | <span class="nb">print</span><span class="p">(</span><span class="s1">'---- Pure forecast mode! ----'</span><span class="p">)</span> |
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| 299 | <span class="k">else</span><span class="p">:</span> |
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| 300 | <span class="nb">print</span><span class="p">(</span><span class="s1">'---- On-demand mode! ----'</span><span class="p">)</span> |
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[2625ca8] | 301 | |
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[274f9ef] | 302 | <span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span> |
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[2625ca8] | 303 | <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'.ksh'</span><span class="p">)</span> |
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[274f9ef] | 304 | |
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[2625ca8] | 305 | <span class="c1"># divide time periode into specified number of job chunks</span> |
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| 306 | <span class="c1"># to have multiple job scripts</span> |
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| 307 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">job_chunk</span><span class="p">:</span> |
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| 308 | <span class="n">start</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">start_date</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span> |
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| 309 | <span class="n">end</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span> |
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| 310 | <span class="n">chunk</span> <span class="o">=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">days</span><span class="o">=</span><span class="n">c</span><span class="o">.</span><span class="n">job_chunk</span><span class="p">)</span> |
---|
[f66f990] | 311 | <span class="n">oneday</span> <span class="o">=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">days</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span> |
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[274f9ef] | 312 | |
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[2625ca8] | 313 | <span class="k">while</span> <span class="n">start</span> <span class="o"><=</span> <span class="n">end</span><span class="p">:</span> |
---|
| 314 | <span class="k">if</span> <span class="p">(</span><span class="n">start</span> <span class="o">+</span> <span class="n">chunk</span><span class="p">)</span> <span class="o"><=</span> <span class="n">end</span><span class="p">:</span> |
---|
[f66f990] | 315 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="p">(</span><span class="n">start</span> <span class="o">+</span> <span class="n">chunk</span> <span class="o">-</span> <span class="n">oneday</span><span class="p">)</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">)</span> |
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[2625ca8] | 316 | <span class="k">else</span><span class="p">:</span> |
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| 317 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="n">end</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">)</span> |
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[274f9ef] | 318 | |
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[2625ca8] | 319 | <span class="n">clist</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> |
---|
| 320 | <span class="n">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">)</span> |
---|
| 321 | |
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| 322 | <span class="n">job_id</span> <span class="o">=</span> <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">queue</span><span class="p">,</span> <span class="n">job_file</span><span class="p">)</span> |
---|
| 323 | <span class="nb">print</span><span class="p">(</span><span class="s1">'The job id is: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">job_id</span><span class="o">.</span><span class="n">strip</span><span class="p">()))</span> |
---|
| 324 | |
---|
| 325 | <span class="n">start</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">chunk</span> |
---|
| 326 | <span class="n">c</span><span class="o">.</span><span class="n">start_date</span> <span class="o">=</span> <span class="n">start</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">)</span> |
---|
| 327 | <span class="c1"># submit a single job script</span> |
---|
| 328 | <span class="k">else</span><span class="p">:</span> |
---|
| 329 | <span class="n">clist</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> |
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| 330 | |
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| 331 | <span class="n">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">)</span> |
---|
| 332 | |
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| 333 | <span class="n">job_id</span> <span class="o">=</span> <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">queue</span><span class="p">,</span> <span class="n">job_file</span><span class="p">)</span> |
---|
| 334 | <span class="nb">print</span><span class="p">(</span><span class="s1">'The job id is: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">job_id</span><span class="o">.</span><span class="n">strip</span><span class="p">()))</span> |
---|
[274f9ef] | 335 | |
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| 336 | <span class="k">else</span><span class="p">:</span> |
---|
| 337 | <span class="c1"># --------- create operational job script ----------------------------------</span> |
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| 338 | <span class="nb">print</span><span class="p">(</span><span class="s1">'---- Operational mode! ----'</span><span class="p">)</span> |
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[2625ca8] | 339 | |
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[274f9ef] | 340 | <span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span> |
---|
| 341 | <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'oper.ksh'</span><span class="p">)</span> |
---|
| 342 | |
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| 343 | <span class="n">c</span><span class="o">.</span><span class="n">start_date</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_YEAR}</span><span class="s1">$</span><span class="si">{MSJ_MONTH}</span><span class="s1">$</span><span class="si">{MSJ_DAY}</span><span class="s1">'</span> |
---|
| 344 | <span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_YEAR}</span><span class="s1">$</span><span class="si">{MSJ_MONTH}</span><span class="s1">$</span><span class="si">{MSJ_DAY}</span><span class="s1">'</span> |
---|
[f66f990] | 345 | <span class="n">c</span><span class="o">.</span><span class="n">basetime</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_BASETIME}</span><span class="s1">'</span> |
---|
[2625ca8] | 346 | <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">maxstep</span> <span class="o">></span> <span class="mi">24</span><span class="p">:</span> |
---|
[274f9ef] | 347 | <span class="n">c</span><span class="o">.</span><span class="n">time</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_BASETIME}</span><span class="s1"> </span><span class="si">{MSJ_BASETIME}</span><span class="s1">'</span> |
---|
| 348 | |
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[2625ca8] | 349 | <span class="n">clist</span> <span class="o">=</span> <span class="n">c</span><span class="o">.</span><span class="n">to_list</span><span class="p">()</span> |
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[274f9ef] | 350 | |
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[2625ca8] | 351 | <span class="n">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">)</span> |
---|
[274f9ef] | 352 | |
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[2625ca8] | 353 | <span class="n">job_id</span> <span class="o">=</span> <span class="n">submit_job_to_ecserver</span><span class="p">(</span><span class="n">queue</span><span class="p">,</span> <span class="n">job_file</span><span class="p">)</span> |
---|
| 354 | <span class="nb">print</span><span class="p">(</span><span class="s1">'The job id is: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">job_id</span><span class="o">.</span><span class="n">strip</span><span class="p">()))</span> |
---|
| 355 | |
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| 356 | <span class="nb">print</span><span class="p">(</span><span class="s1">'You should get an email per job with subject flex.hostname.pid'</span><span class="p">)</span> |
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[274f9ef] | 357 | |
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[2625ca8] | 358 | <span class="k">return</span></div> |
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| 359 | |
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| 360 | <div class="viewcode-block" id="mk_jobscript"><a class="viewcode-back" href="../api.html#submit.mk_jobscript">[docs]</a><span class="k">def</span> <span class="nf">mk_jobscript</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> <span class="n">job_file</span><span class="p">,</span> <span class="n">clist</span><span class="p">):</span> |
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| 361 | <span class="sd">'''Creates the job script from template.</span> |
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| 362 | |
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| 363 | <span class="sd"> Parameters</span> |
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| 364 | <span class="sd"> ----------</span> |
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| 365 | <span class="sd"> jtemplate : str</span> |
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| 366 | <span class="sd"> Job template file from sub-directory "_templates" for</span> |
---|
| 367 | <span class="sd"> submission to ECMWF. It contains all necessary</span> |
---|
| 368 | <span class="sd"> module and variable settings for the ECMWF environment as well as</span> |
---|
| 369 | <span class="sd"> the job call and mail report instructions.</span> |
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| 370 | <span class="sd"> Default is "job.temp".</span> |
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| 371 | |
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| 372 | <span class="sd"> job_file : str</span> |
---|
| 373 | <span class="sd"> Path to the job script file.</span> |
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[274f9ef] | 374 | |
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[2625ca8] | 375 | <span class="sd"> clist : list of str</span> |
---|
| 376 | <span class="sd"> Contains all necessary parameters for ECMWF CONTROL file.</span> |
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| 377 | |
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| 378 | <span class="sd"> Return</span> |
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| 379 | <span class="sd"> ------</span> |
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| 380 | |
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| 381 | <span class="sd"> '''</span> |
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| 382 | <span class="kn">from</span> <span class="nn">genshi.template.text</span> <span class="k">import</span> <span class="n">NewTextTemplate</span> |
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| 383 | <span class="kn">from</span> <span class="nn">genshi.template</span> <span class="k">import</span> <span class="n">TemplateLoader</span> |
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| 384 | <span class="kn">from</span> <span class="nn">genshi.template.eval</span> <span class="k">import</span> <span class="n">UndefinedError</span> |
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| 385 | |
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| 386 | <span class="c1"># load template and insert control content as list</span> |
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| 387 | <span class="k">try</span><span class="p">:</span> |
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| 388 | <span class="n">loader</span> <span class="o">=</span> <span class="n">TemplateLoader</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_TEMPLATES</span><span class="p">,</span> <span class="n">auto_reload</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span> |
---|
| 389 | <span class="n">control_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">jtemplate</span><span class="p">,</span> |
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| 390 | <span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span> |
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| 391 | |
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| 392 | <span class="n">stream</span> <span class="o">=</span> <span class="n">control_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">control_content</span><span class="o">=</span><span class="n">clist</span><span class="p">)</span> |
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| 393 | <span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
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| 394 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span> |
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| 395 | |
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| 396 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate jobscript'</span><span class="p">)</span> |
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| 397 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
| 398 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
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| 399 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
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| 400 | |
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| 401 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to generate jobscript'</span><span class="p">)</span> |
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| 402 | |
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| 403 | <span class="c1"># create jobscript file</span> |
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| 404 | <span class="k">try</span><span class="p">:</span> |
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| 405 | <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">job_file</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span> |
---|
| 406 | <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">render</span><span class="p">(</span><span class="s1">'text'</span><span class="p">))</span> |
---|
| 407 | <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span> |
---|
| 408 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span> |
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| 409 | <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span> |
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| 410 | |
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| 411 | <span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to write '</span> <span class="o">+</span> <span class="n">job_file</span><span class="p">)</span> |
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[274f9ef] | 412 | |
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| 413 | <span class="k">return</span></div> |
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| 414 | |
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[2625ca8] | 415 | |
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[274f9ef] | 416 | <span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">"__main__"</span><span class="p">:</span> |
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| 417 | <span class="n">main</span><span class="p">()</span> |
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| 418 | </pre></div> |
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| 419 | |
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| 420 | </div> |
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| 421 | |
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| 422 | </div> |
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| 423 | <footer> |
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| 424 | |
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| 425 | |
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| 426 | <hr/> |
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| 427 | |
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| 428 | <div role="contentinfo"> |
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| 429 | <p> |
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[f66f990] | 430 | © Copyright 2018, Anne Philipp and Leopold Haimberger. |
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[274f9ef] | 431 | |
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| 432 | </p> |
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| 433 | </div> |
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| 434 | Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. |
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| 435 | |
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| 436 | </footer> |
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| 437 | |
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| 438 | </div> |
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| 439 | </div> |
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| 440 | |
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| 441 | </section> |
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| 442 | |
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| 443 | </div> |
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| 444 | |
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| 445 | |
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| 446 | |
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| 447 | |
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| 448 | |
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[f66f990] | 449 | <script type="text/javascript"> |
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| 450 | var DOCUMENTATION_OPTIONS = { |
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| 451 | URL_ROOT:'../', |
---|
| 452 | VERSION:'7.1 alpha', |
---|
| 453 | LANGUAGE:'None', |
---|
| 454 | COLLAPSE_INDEX:false, |
---|
| 455 | FILE_SUFFIX:'.html', |
---|
| 456 | HAS_SOURCE: true, |
---|
| 457 | SOURCELINK_SUFFIX: '.txt' |
---|
| 458 | }; |
---|
| 459 | </script> |
---|
| 460 | <script type="text/javascript" src="../_static/jquery.js"></script> |
---|
| 461 | <script type="text/javascript" src="../_static/underscore.js"></script> |
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| 462 | <script type="text/javascript" src="../_static/doctools.js"></script> |
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| 463 | <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> |
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[274f9ef] | 464 | |
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| 465 | |
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| 466 | |
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| 467 | <script type="text/javascript" src="../_static/js/theme.js"></script> |
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| 468 | |
---|
| 469 | <script type="text/javascript"> |
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| 470 | jQuery(function () { |
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| 471 | SphinxRtdTheme.Navigation.enable(true); |
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| 472 | }); |
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| 473 | </script> |
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| 474 | |
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| 475 | </body> |
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| 476 | </html> |
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