#!/bin/bash # ON ECS or HPC servers: # start with ecaccess-job-submit -queueName on gateway server # start with srun directly on machine #SBATCH --chdir=/scratch/$username #SBATCH --qos=el #SBATCH --job-name=flex_compile #SBATCH --output=flex_compile.%j.out #SBATCH --error=flex_compile.%j.out #SBATCH --mail-type=FAIL ## CRAY specific batch requests ##PBS -N flex_ecmwf ##PBS -q ns ##PBS -S /usr/bin/ksh ##PBS -o $$SCRATCH/flex_extract.$${Jobname}.$${Job_ID}.out # job output is in .ecaccess_DO_NOT_REMOVE ##PBS -j oe ##PBS -V ##PBS -l EC_threads_per_task=1 ##PBS -l EC_memory_per_task=3200MB set -x export VERSION=$version_number case $${EC_CLUSTER} in *ecs*) # module switch prgenv/gnu module load ecmwf-toolbox module load python3 module load ecaccess export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts export MAKEFILE=$makefile ;; *hpc*) # module switch PrgEnv-cray PrgEnv-intel module load python3 module load ecmwf-toolbox module load ecaccess echo $${GROUP} echo $${HOME} echo $${HOME} | awk -F / '{print $1, $2, $3, $4}' export GROUP=`echo $${HOME} | awk -F / '{print $4}'` export SCRATCH=$${SCRATCH} export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts export MAKEFILE=$makefile ;; esac mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} # if FLEXPART_ROOT is not set this means cd to the home directory tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar cd Source/Fortran \rm *.o *.mod $fortran_program make -f $${MAKEFILE} >flexcompile 2>flexcompile ls -l $fortran_program >>flexcompile if [ $$? -eq 0 ]; then echo -e '\nSUCCESS!' >>flexcompile mail -s flexcompile.$${HOST}.$$$$ $${USER} >flexcompile env >> flexcompile mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER}